EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000012534 (Gene tree)
Gene ID: 459657
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 67144 bases
Position: chr2B:41215300-41282443
Accession: 2803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000021430	Rif1_N	PF12231.8	3.2e-77	1	1
ENSPTRP00000093178	Rif1_N	PF12231.8	3.2e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000091450	-	10171	XM_001137674	ENSPTRP00000093178	2473 (aa)	XP_001137674	A0A2I3TVH6
ENSPTRT00000023239	-	9771	XM_016949815	ENSPTRP00000021430	2447 (aa)	XP_016805304	H2QIT9

Gene Model

Click here to download ENSPTRG00000012534's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000012534's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000012534	RIF1	100	99.110	ENSG00000080345	RIF1	100	99.110	Homo_sapiens
ENSPTRG00000012534	RIF1	99	80.137	ENSAMEG00000008461	RIF1	100	80.097	Ailuropoda_melanoleuca
ENSPTRG00000012534	RIF1	64	50.000	ENSACIG00000017765	rif1	69	50.078	Amphilophus_citrinellus
ENSPTRG00000012534	RIF1	53	48.597	ENSAOCG00000017231	rif1	68	47.612	Amphiprion_ocellaris
ENSPTRG00000012534	RIF1	69	56.082	ENSAPEG00000013228	rif1	52	56.082	Amphiprion_percula
ENSPTRG00000012534	RIF1	65	48.273	ENSATEG00000022887	rif1	68	48.273	Anabas_testudineus
ENSPTRG00000012534	RIF1	84	65.306	ENSAPLG00000007092	RIF1	92	65.015	Anas_platyrhynchos
ENSPTRG00000012534	RIF1	84	57.227	ENSACAG00000003714	RIF1	90	57.227	Anolis_carolinensis
ENSPTRG00000012534	RIF1	100	90.784	ENSANAG00000024840	RIF1	100	90.784	Aotus_nancymaae
ENSPTRG00000012534	RIF1	63	45.833	ENSAMXG00000010910	rif1	52	51.051	Astyanax_mexicanus
ENSPTRG00000012534	RIF1	94	78.909	ENSBTAG00000021020	RIF1	99	78.909	Bos_taurus
ENSPTRG00000012534	RIF1	100	89.939	ENSCJAG00000003138	RIF1	100	89.939	Callithrix_jacchus
ENSPTRG00000012534	RIF1	100	78.278	ENSCAFG00000005670	RIF1	97	78.238	Canis_familiaris
ENSPTRG00000012534	RIF1	100	77.558	ENSCAFG00020016401	RIF1	100	77.518	Canis_lupus_dingo
ENSPTRG00000012534	RIF1	100	79.170	ENSCHIG00000020327	RIF1	100	79.170	Capra_hircus
ENSPTRG00000012534	RIF1	99	80.073	ENSTSYG00000008861	RIF1	100	80.073	Carlito_syrichta
ENSPTRG00000012534	RIF1	79	83.721	ENSCAPG00000008957	RIF1	96	83.721	Cavia_aperea
ENSPTRG00000012534	RIF1	99	71.371	ENSCPOG00000037898	RIF1	99	71.452	Cavia_porcellus
ENSPTRG00000012534	RIF1	100	89.450	ENSCCAG00000024760	RIF1	100	89.450	Cebus_capucinus
ENSPTRG00000012534	RIF1	100	95.188	ENSCATG00000033353	RIF1	100	95.188	Cercocebus_atys
ENSPTRG00000012534	RIF1	96	74.603	ENSCLAG00000001517	RIF1	99	74.383	Chinchilla_lanigera
ENSPTRG00000012534	RIF1	100	94.986	ENSCSAG00000016089	RIF1	100	94.986	Chlorocebus_sabaeus
ENSPTRG00000012534	RIF1	97	77.391	ENSCHOG00000007187	RIF1	97	77.391	Choloepus_hoffmanni
ENSPTRG00000012534	RIF1	90	71.598	ENSCPBG00000025885	RIF1	96	72.700	Chrysemys_picta_bellii
ENSPTRG00000012534	RIF1	100	93.614	ENSCANG00000028962	RIF1	100	94.717	Colobus_angolensis_palliatus
ENSPTRG00000012534	RIF1	99	70.494	ENSCGRG00001024589	Rif1	100	70.494	Cricetulus_griseus_chok1gshd
ENSPTRG00000012534	RIF1	99	71.568	ENSCGRG00000010713	Rif1	100	71.568	Cricetulus_griseus_crigri
ENSPTRG00000012534	RIF1	64	48.832	ENSCVAG00000022479	rif1	68	48.832	Cyprinodon_variegatus
ENSPTRG00000012534	RIF1	99	77.054	ENSDNOG00000011194	RIF1	97	77.054	Dasypus_novemcinctus
ENSPTRG00000012534	RIF1	92	72.369	ENSETEG00000012421	RIF1	92	72.045	Echinops_telfairi
ENSPTRG00000012534	RIF1	96	87.743	ENSEASG00005023434	RIF1	98	91.089	Equus_asinus_asinus
ENSPTRG00000012534	RIF1	97	90.332	ENSECAG00000012679	RIF1	100	90.332	Equus_caballus
ENSPTRG00000012534	RIF1	62	50.954	ENSELUG00000006826	rif1	56	50.789	Esox_lucius
ENSPTRG00000012534	RIF1	100	79.115	ENSFCAG00000029742	RIF1	100	79.364	Felis_catus
ENSPTRG00000012534	RIF1	78	63.415	ENSFALG00000013874	RIF1	91	64.024	Ficedula_albicollis
ENSPTRG00000012534	RIF1	99	75.726	ENSFDAG00000006538	RIF1	99	75.685	Fukomys_damarensis
ENSPTRG00000012534	RIF1	62	50.081	ENSFHEG00000013721	rif1	65	49.960	Fundulus_heteroclitus
ENSPTRG00000012534	RIF1	53	52.747	ENSGMOG00000003517	rif1	80	52.747	Gadus_morhua
ENSPTRG00000012534	RIF1	79	64.118	ENSGALG00000012484	RIF1	91	64.118	Gallus_gallus
ENSPTRG00000012534	RIF1	59	54.100	ENSGAFG00000017196	rif1	65	53.797	Gambusia_affinis
ENSPTRG00000012534	RIF1	59	55.285	ENSGACG00000008579	rif1	66	54.800	Gasterosteus_aculeatus
ENSPTRG00000012534	RIF1	88	71.257	ENSGAGG00000012595	RIF1	97	72.372	Gopherus_agassizii
ENSPTRG00000012534	RIF1	90	99.714	ENSGGOG00000040178	RIF1	96	99.714	Gorilla_gorilla
ENSPTRG00000012534	RIF1	61	54.475	ENSHBUG00000007125	rif1	66	54.864	Haplochromis_burtoni
ENSPTRG00000012534	RIF1	95	75.607	ENSHGLG00100009807	RIF1	99	75.521	Heterocephalus_glaber_male
ENSPTRG00000012534	RIF1	63	48.257	ENSHCOG00000015943	rif1	60	48.257	Hippocampus_comes
ENSPTRG00000012534	RIF1	50	52.627	ENSIPUG00000021703	rif1	50	52.450	Ictalurus_punctatus
ENSPTRG00000012534	RIF1	100	78.005	ENSSTOG00000020712	RIF1	100	78.005	Ictidomys_tridecemlineatus
ENSPTRG00000012534	RIF1	99	69.432	ENSJJAG00000023000	Rif1	100	69.472	Jaculus_jaculus
ENSPTRG00000012534	RIF1	64	49.213	ENSKMAG00000002852	rif1	67	49.213	Kryptolebias_marmoratus
ENSPTRG00000012534	RIF1	60	55.600	ENSLBEG00000023196	rif1	57	55.600	Labrus_bergylta
ENSPTRG00000012534	RIF1	85	62.687	ENSLACG00000005425	RIF1	89	62.687	Latimeria_chalumnae
ENSPTRG00000012534	RIF1	62	53.785	ENSLOCG00000002657	rif1	82	51.613	Lepisosteus_oculatus
ENSPTRG00000012534	RIF1	99	78.091	ENSLAFG00000009796	RIF1	100	78.091	Loxodonta_africana
ENSPTRG00000012534	RIF1	100	95.188	ENSMFAG00000032233	RIF1	100	95.188	Macaca_fascicularis
ENSPTRG00000012534	RIF1	100	95.148	ENSMMUG00000008611	RIF1	100	95.148	Macaca_mulatta
ENSPTRG00000012534	RIF1	100	95.107	ENSMNEG00000031616	RIF1	100	95.107	Macaca_nemestrina
ENSPTRG00000012534	RIF1	100	95.228	ENSMLEG00000042945	RIF1	100	95.228	Mandrillus_leucophaeus
ENSPTRG00000012534	RIF1	74	49.087	ENSMAMG00000001745	rif1	76	49.010	Mastacembelus_armatus
ENSPTRG00000012534	RIF1	63	51.033	ENSMZEG00005020920	rif1	69	51.033	Maylandia_zebra
ENSPTRG00000012534	RIF1	84	59.780	ENSMGAG00000012732	RIF1	92	59.780	Meleagris_gallopavo
ENSPTRG00000012534	RIF1	95	89.694	ENSMAUG00000013158	Rif1	99	89.694	Mesocricetus_auratus
ENSPTRG00000012534	RIF1	100	84.522	ENSMICG00000046127	RIF1	100	84.522	Microcebus_murinus
ENSPTRG00000012534	RIF1	99	70.012	ENSMOCG00000009381	Rif1	100	70.012	Microtus_ochrogaster
ENSPTRG00000012534	RIF1	62	49.401	ENSMMOG00000006519	rif1	51	49.244	Mola_mola
ENSPTRG00000012534	RIF1	100	59.800	ENSMODG00000003703	RIF1	100	59.552	Monodelphis_domestica
ENSPTRG00000012534	RIF1	63	49.358	ENSMALG00000016759	rif1	71	49.274	Monopterus_albus
ENSPTRG00000012534	RIF1	99	69.246	MGP_CAROLIEiJ_G0023555	Rif1	100	69.327	Mus_caroli
ENSPTRG00000012534	RIF1	99	70.012	ENSMUSG00000036202	Rif1	100	70.092	Mus_musculus
ENSPTRG00000012534	RIF1	99	68.145	MGP_PahariEiJ_G0025006	Rif1	100	68.105	Mus_pahari
ENSPTRG00000012534	RIF1	99	69.754	MGP_SPRETEiJ_G0024476	Rif1	100	69.754	Mus_spretus
ENSPTRG00000012534	RIF1	100	79.219	ENSMPUG00000000371	RIF1	100	79.219	Mustela_putorius_furo
ENSPTRG00000012534	RIF1	90	76.782	ENSMLUG00000003376	RIF1	100	76.782	Myotis_lucifugus
ENSPTRG00000012534	RIF1	100	73.097	ENSNGAG00000009268	Rif1	100	73.097	Nannospalax_galili
ENSPTRG00000012534	RIF1	62	50.607	ENSNBRG00000014257	rif1	69	50.040	Neolamprologus_brichardi
ENSPTRG00000012534	RIF1	100	95.606	ENSNLEG00000010955	RIF1	100	95.606	Nomascus_leucogenys
ENSPTRG00000012534	RIF1	83	78.222	ENSMEUG00000007601	-	88	78.222	Notamacropus_eugenii
ENSPTRG00000012534	RIF1	99	72.142	ENSODEG00000003950	RIF1	99	72.464	Octodon_degus
ENSPTRG00000012534	RIF1	75	49.091	ENSONIG00000013657	rif1	68	50.423	Oreochromis_niloticus
ENSPTRG00000012534	RIF1	84	64.964	ENSOANG00000006078	-	86	64.964	Ornithorhynchus_anatinus
ENSPTRG00000012534	RIF1	100	76.712	ENSOCUG00000017435	RIF1	100	76.712	Oryctolagus_cuniculus
ENSPTRG00000012534	RIF1	64	47.937	ENSORLG00020001302	rif1	69	48.524	Oryzias_latipes_hni
ENSPTRG00000012534	RIF1	62	48.254	ENSORLG00015000009	rif1	66	47.096	Oryzias_latipes_hsok
ENSPTRG00000012534	RIF1	68	48.845	ENSOMEG00000021513	rif1	74	47.867	Oryzias_melastigma
ENSPTRG00000012534	RIF1	99	81.290	ENSOGAG00000006141	RIF1	99	81.169	Otolemur_garnettii
ENSPTRG00000012534	RIF1	100	79.170	ENSOARG00000008930	RIF1	100	79.170	Ovis_aries
ENSPTRG00000012534	RIF1	100	99.677	ENSPPAG00000023754	RIF1	100	99.677	Pan_paniscus
ENSPTRG00000012534	RIF1	100	79.284	ENSPPRG00000003618	RIF1	100	79.405	Panthera_pardus
ENSPTRG00000012534	RIF1	100	79.324	ENSPTIG00000020652	RIF1	100	79.445	Panthera_tigris_altaica
ENSPTRG00000012534	RIF1	100	94.865	ENSPANG00000008525	RIF1	100	94.865	Papio_anubis
ENSPTRG00000012534	RIF1	63	52.055	ENSPKIG00000004267	rif1	68	51.997	Paramormyrops_kingsleyae
ENSPTRG00000012534	RIF1	65	46.386	ENSPMGG00000016141	rif1	79	45.059	Periophthalmus_magnuspinnatus
ENSPTRG00000012534	RIF1	99	71.966	ENSPEMG00000000446	Rif1	99	71.966	Peromyscus_maniculatus_bairdii
ENSPTRG00000012534	RIF1	99	59.246	ENSPCIG00000009185	RIF1	99	59.166	Phascolarctos_cinereus
ENSPTRG00000012534	RIF1	56	51.750	ENSPFOG00000000554	-	63	51.473	Poecilia_formosa
ENSPTRG00000012534	RIF1	62	51.515	ENSPFOG00000017804	rif1	65	51.406	Poecilia_formosa
ENSPTRG00000012534	RIF1	62	51.249	ENSPLAG00000017945	rif1	68	51.251	Poecilia_latipinna
ENSPTRG00000012534	RIF1	53	50.147	ENSPMEG00000006897	-	62	49.853	Poecilia_mexicana
ENSPTRG00000012534	RIF1	55	64.894	ENSPREG00000018052	rif1	65	54.223	Poecilia_reticulata
ENSPTRG00000012534	RIF1	100	97.452	ENSPPYG00000012846	RIF1	100	97.452	Pongo_abelii
ENSPTRG00000012534	RIF1	83	88.119	ENSPCAG00000009032	RIF1	83	88.119	Procavia_capensis
ENSPTRG00000012534	RIF1	100	84.677	ENSPCOG00000027888	RIF1	100	84.677	Propithecus_coquereli
ENSPTRG00000012534	RIF1	93	88.821	ENSPVAG00000014276	RIF1	95	88.821	Pteropus_vampyrus
ENSPTRG00000012534	RIF1	63	49.085	ENSPNYG00000012940	rif1	68	49.007	Pundamilia_nyererei
ENSPTRG00000012534	RIF1	65	51.776	ENSPNAG00000016685	rif1	67	52.113	Pygocentrus_nattereri
ENSPTRG00000012534	RIF1	99	68.514	ENSRNOG00000054901	Rif1	100	68.514	Rattus_norvegicus
ENSPTRG00000012534	RIF1	100	94.339	ENSRBIG00000003704	RIF1	100	94.339	Rhinopithecus_bieti
ENSPTRG00000012534	RIF1	100	95.431	ENSRROG00000028206	RIF1	100	95.431	Rhinopithecus_roxellana
ENSPTRG00000012534	RIF1	97	96.774	ENSSBOG00000029530	RIF1	100	96.774	Saimiri_boliviensis_boliviensis
ENSPTRG00000012534	RIF1	99	59.306	ENSSHAG00000018552	RIF1	100	58.337	Sarcophilus_harrisii
ENSPTRG00000012534	RIF1	63	53.387	ENSSFOG00015021539	rif1	75	53.274	Scleropages_formosus
ENSPTRG00000012534	RIF1	51	49.725	ENSSMAG00000011704	rif1	51	48.716	Scophthalmus_maximus
ENSPTRG00000012534	RIF1	62	50.684	ENSSDUG00000015632	rif1	72	49.091	Seriola_dumerili
ENSPTRG00000012534	RIF1	50	50.119	ENSSLDG00000019531	rif1	53	48.197	Seriola_lalandi_dorsalis
ENSPTRG00000012534	RIF1	63	83.051	ENSSARG00000007161	-	64	83.051	Sorex_araneus
ENSPTRG00000012534	RIF1	83	71.257	ENSSPUG00000003062	RIF1	90	71.257	Sphenodon_punctatus
ENSPTRG00000012534	RIF1	50	57.172	ENSSPAG00000018359	rif1	76	57.172	Stegastes_partitus
ENSPTRG00000012534	RIF1	100	79.541	ENSSSCG00000016395	RIF1	100	79.541	Sus_scrofa
ENSPTRG00000012534	RIF1	64	49.562	ENSTRUG00000015808	rif1	70	49.483	Takifugu_rubripes
ENSPTRG00000012534	RIF1	67	48.760	ENSTNIG00000011538	rif1	78	47.982	Tetraodon_nigroviridis
ENSPTRG00000012534	RIF1	83	88.608	ENSTBEG00000016082	RIF1	82	88.608	Tupaia_belangeri
ENSPTRG00000012534	RIF1	100	80.274	ENSTTRG00000011190	RIF1	100	80.274	Tursiops_truncatus
ENSPTRG00000012534	RIF1	86	89.386	ENSUAMG00000026385	RIF1	97	89.386	Ursus_americanus
ENSPTRG00000012534	RIF1	100	80.233	ENSUMAG00000000337	RIF1	99	88.630	Ursus_maritimus
ENSPTRG00000012534	RIF1	100	78.091	ENSVPAG00000002162	RIF1	100	78.091	Vicugna_pacos
ENSPTRG00000012534	RIF1	100	77.832	ENSVVUG00000011293	RIF1	100	77.630	Vulpes_vulpes
ENSPTRG00000012534	RIF1	99	43.738	ENSXETG00000004530	rif1	99	43.374	Xenopus_tropicalis
ENSPTRG00000012534	RIF1	63	48.405	ENSXMAG00000000506	rif1	64	48.716	Xiphophorus_maculatus