EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000012771 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 42421 bases
Position: chr2B:87963776-88006196
Accession: 2814
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000021823	SF3b1	PF08920.10	1.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000089873	-	435	-	ENSPTRP00000064621	144 (aa)	XP_024210775	K7C7Q3
ENSPTRT00000083069	-	465	-	ENSPTRP00000080425	154 (aa)	-	A0A2I3STY8
ENSPTRT00000023664	-	3804	XM_016950273	ENSPTRP00000021823	1267 (aa)	-	H2QJ69

Gene Model

Click here to download ENSPTRG00000012771's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000012771's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000012771	SF3B1	99	91.455	ENSG00000115524	SF3B1	94	97.788	Homo_sapiens
ENSPTRG00000012771	SF3B1	99	86.239	ENSAPOG00000011894	sf3b1	99	86.117	Acanthochromis_polyacanthus
ENSPTRG00000012771	SF3B1	99	91.385	ENSAMEG00000013809	SF3B1	99	91.385	Ailuropoda_melanoleuca
ENSPTRG00000012771	SF3B1	99	85.835	ENSACIG00000020910	sf3b1	96	85.758	Amphilophus_citrinellus
ENSPTRG00000012771	SF3B1	99	86.117	ENSAOCG00000004478	sf3b1	99	86.117	Amphiprion_ocellaris
ENSPTRG00000012771	SF3B1	99	86.117	ENSAPEG00000012937	sf3b1	99	86.117	Amphiprion_percula
ENSPTRG00000012771	SF3B1	99	86.305	ENSATEG00000020435	sf3b1	99	86.305	Anabas_testudineus
ENSPTRG00000012771	SF3B1	99	90.776	ENSAPLG00000003993	SF3B1	99	90.623	Anas_platyrhynchos
ENSPTRG00000012771	SF3B1	99	90.601	ENSACAG00000009612	SF3B1	99	90.447	Anolis_carolinensis
ENSPTRG00000012771	SF3B1	99	91.455	ENSANAG00000021577	SF3B1	99	91.455	Aotus_nancymaae
ENSPTRG00000012771	SF3B1	99	85.344	ENSACLG00000023470	sf3b1	99	85.267	Astatotilapia_calliptera
ENSPTRG00000012771	SF3B1	99	86.565	ENSAMXG00000002219	sf3b1	99	86.412	Astyanax_mexicanus
ENSPTRG00000012771	SF3B1	99	91.378	ENSBTAG00000008915	SF3B1	99	91.378	Bos_taurus
ENSPTRG00000012771	SF3B1	98	63.202	WBGene00011605	sftb-1	98	63.278	Caenorhabditis_elegans
ENSPTRG00000012771	SF3B1	99	91.455	ENSCJAG00000003902	SF3B1	99	91.455	Callithrix_jacchus
ENSPTRG00000012771	SF3B1	99	91.455	ENSCAFG00000010826	SF3B1	99	91.455	Canis_familiaris
ENSPTRG00000012771	SF3B1	99	91.455	ENSCAFG00020004750	SF3B1	99	91.455	Canis_lupus_dingo
ENSPTRG00000012771	SF3B1	99	91.378	ENSCHIG00000015226	SF3B1	99	91.378	Capra_hircus
ENSPTRG00000012771	SF3B1	100	91.028	ENSTSYG00000009214	SF3B1	99	91.378	Carlito_syrichta
ENSPTRG00000012771	SF3B1	99	91.455	ENSCAPG00000006547	SF3B1	99	91.455	Cavia_aperea
ENSPTRG00000012771	SF3B1	99	91.455	ENSCPOG00000009353	SF3B1	100	91.448	Cavia_porcellus
ENSPTRG00000012771	SF3B1	99	91.455	ENSCCAG00000020506	SF3B1	99	91.455	Cebus_capucinus
ENSPTRG00000012771	SF3B1	99	91.455	ENSCATG00000035735	SF3B1	99	91.455	Cercocebus_atys
ENSPTRG00000012771	SF3B1	99	91.455	ENSCLAG00000014767	SF3B1	99	91.455	Chinchilla_lanigera
ENSPTRG00000012771	SF3B1	99	91.455	ENSCSAG00000011505	SF3B1	99	91.455	Chlorocebus_sabaeus
ENSPTRG00000012771	SF3B1	77	98.214	ENSCHOG00000009860	SF3B1	75	98.182	Choloepus_hoffmanni
ENSPTRG00000012771	SF3B1	99	90.762	ENSCPBG00000021902	SF3B1	99	90.608	Chrysemys_picta_bellii
ENSPTRG00000012771	SF3B1	68	70.465	ENSCING00000002558	-	99	71.076	Ciona_intestinalis
ENSPTRG00000012771	SF3B1	98	75.748	ENSCSAVG00000002559	-	99	75.332	Ciona_savignyi
ENSPTRG00000012771	SF3B1	99	91.455	ENSCANG00000029415	SF3B1	99	91.455	Colobus_angolensis_palliatus
ENSPTRG00000012771	SF3B1	99	91.455	ENSCGRG00001016990	Sf3b1	99	91.455	Cricetulus_griseus_chok1gshd
ENSPTRG00000012771	SF3B1	99	91.455	ENSCGRG00000005301	Sf3b1	99	91.455	Cricetulus_griseus_crigri
ENSPTRG00000012771	SF3B1	99	82.772	ENSCSEG00000003860	sf3b1	99	82.695	Cynoglossus_semilaevis
ENSPTRG00000012771	SF3B1	96	86.100	ENSCVAG00000003680	sf3b1	99	86.100	Cyprinodon_variegatus
ENSPTRG00000012771	SF3B1	99	86.423	ENSDARG00000056138	sf3b1	99	86.346	Danio_rerio
ENSPTRG00000012771	SF3B1	99	91.385	ENSDNOG00000011754	SF3B1	99	91.385	Dasypus_novemcinctus
ENSPTRG00000012771	SF3B1	99	88.761	ENSDORG00000002399	Sf3b1	100	88.684	Dipodomys_ordii
ENSPTRG00000012771	SF3B1	99	71.908	FBgn0031266	Sf3b1	99	71.908	Drosophila_melanogaster
ENSPTRG00000012771	SF3B1	82	89.094	ENSETEG00000009188	SF3B1	100	89.094	Echinops_telfairi
ENSPTRG00000012771	SF3B1	99	83.281	ENSEBUG00000004325	sf3b1	100	85.123	Eptatretus_burgeri
ENSPTRG00000012771	SF3B1	99	91.378	ENSEASG00005020159	SF3B1	97	91.378	Equus_asinus_asinus
ENSPTRG00000012771	SF3B1	99	91.378	ENSECAG00000021657	SF3B1	97	91.378	Equus_caballus
ENSPTRG00000012771	SF3B1	81	100.000	ENSEEUG00000000836	SF3B1	80	100.000	Erinaceus_europaeus
ENSPTRG00000012771	SF3B1	99	85.898	ENSELUG00000005977	sf3b1	97	85.747	Esox_lucius
ENSPTRG00000012771	SF3B1	99	91.455	ENSFCAG00000005038	SF3B1	99	91.455	Felis_catus
ENSPTRG00000012771	SF3B1	99	90.916	ENSFALG00000004281	SF3B1	99	90.762	Ficedula_albicollis
ENSPTRG00000012771	SF3B1	99	91.455	ENSFDAG00000017510	SF3B1	99	91.455	Fukomys_damarensis
ENSPTRG00000012771	SF3B1	99	85.584	ENSFHEG00000014333	sf3b1	99	85.584	Fundulus_heteroclitus
ENSPTRG00000012771	SF3B1	99	86.162	ENSGMOG00000006773	sf3b1	99	86.162	Gadus_morhua
ENSPTRG00000012771	SF3B1	99	90.839	ENSGALG00000008038	SF3B1	99	90.685	Gallus_gallus
ENSPTRG00000012771	SF3B1	99	86.220	ENSGAFG00000000704	sf3b1	99	86.220	Gambusia_affinis
ENSPTRG00000012771	SF3B1	99	86.294	ENSGACG00000008839	sf3b1	99	86.294	Gasterosteus_aculeatus
ENSPTRG00000012771	SF3B1	99	90.762	ENSGAGG00000017478	SF3B1	99	90.608	Gopherus_agassizii
ENSPTRG00000012771	SF3B1	100	91.562	ENSGGOG00000009264	SF3B1	100	91.641	Gorilla_gorilla
ENSPTRG00000012771	SF3B1	99	85.398	ENSHBUG00000007705	sf3b1	99	85.321	Haplochromis_burtoni
ENSPTRG00000012771	SF3B1	99	91.455	ENSHGLG00000008285	-	99	91.455	Heterocephalus_glaber_female
ENSPTRG00000012771	SF3B1	99	89.453	ENSHGLG00100005535	-	99	89.453	Heterocephalus_glaber_male
ENSPTRG00000012771	SF3B1	99	85.660	ENSHCOG00000016775	sf3b1	99	85.508	Hippocampus_comes
ENSPTRG00000012771	SF3B1	99	86.836	ENSIPUG00000013171	sf3b1	99	86.836	Ictalurus_punctatus
ENSPTRG00000012771	SF3B1	99	91.455	ENSSTOG00000011034	SF3B1	99	91.455	Ictidomys_tridecemlineatus
ENSPTRG00000012771	SF3B1	99	91.345	ENSJJAG00000010903	Sf3b1	99	91.345	Jaculus_jaculus
ENSPTRG00000012771	SF3B1	99	85.921	ENSKMAG00000004009	sf3b1	99	85.845	Kryptolebias_marmoratus
ENSPTRG00000012771	SF3B1	99	86.426	ENSLBEG00000022208	sf3b1	99	86.273	Labrus_bergylta
ENSPTRG00000012771	SF3B1	99	84.645	ENSLACG00000014832	SF3B1	99	84.645	Latimeria_chalumnae
ENSPTRG00000012771	SF3B1	99	87.576	ENSLOCG00000003899	sf3b1	99	87.424	Lepisosteus_oculatus
ENSPTRG00000012771	SF3B1	99	91.455	ENSLAFG00000001956	SF3B1	99	91.455	Loxodonta_africana
ENSPTRG00000012771	SF3B1	99	91.455	ENSMMUG00000022430	SF3B1	99	91.455	Macaca_mulatta
ENSPTRG00000012771	SF3B1	99	91.455	ENSMNEG00000042333	SF3B1	99	91.455	Macaca_nemestrina
ENSPTRG00000012771	SF3B1	94	90.315	ENSMLEG00000026141	SF3B1	98	90.315	Mandrillus_leucophaeus
ENSPTRG00000012771	SF3B1	99	86.513	ENSMAMG00000010241	sf3b1	99	86.513	Mastacembelus_armatus
ENSPTRG00000012771	SF3B1	99	85.344	ENSMZEG00005021254	sf3b1	99	85.267	Maylandia_zebra
ENSPTRG00000012771	SF3B1	99	90.223	ENSMGAG00000007017	SF3B1	99	90.069	Meleagris_gallopavo
ENSPTRG00000012771	SF3B1	99	87.221	ENSMAUG00000009071	Sf3b1	99	87.221	Mesocricetus_auratus
ENSPTRG00000012771	SF3B1	99	91.378	ENSMICG00000013879	SF3B1	99	91.378	Microcebus_murinus
ENSPTRG00000012771	SF3B1	99	87.067	ENSMOCG00000000455	Sf3b1	99	87.067	Microtus_ochrogaster
ENSPTRG00000012771	SF3B1	83	84.573	ENSMMOG00000000475	sf3b1	99	84.573	Mola_mola
ENSPTRG00000012771	SF3B1	99	90.762	ENSMODG00000012275	SF3B1	99	90.762	Monodelphis_domestica
ENSPTRG00000012771	SF3B1	99	86.260	ENSMALG00000017211	sf3b1	99	86.260	Monopterus_albus
ENSPTRG00000012771	SF3B1	99	91.455	MGP_CAROLIEiJ_G0014141	Sf3b1	99	91.455	Mus_caroli
ENSPTRG00000012771	SF3B1	99	91.455	ENSMUSG00000025982	Sf3b1	99	91.455	Mus_musculus
ENSPTRG00000012771	SF3B1	99	91.455	MGP_SPRETEiJ_G0014947	Sf3b1	99	91.455	Mus_spretus
ENSPTRG00000012771	SF3B1	99	91.455	ENSMPUG00000007799	SF3B1	99	91.455	Mustela_putorius_furo
ENSPTRG00000012771	SF3B1	99	90.223	ENSMLUG00000000840	SF3B1	99	90.223	Myotis_lucifugus
ENSPTRG00000012771	SF3B1	99	91.448	ENSNGAG00000021884	-	99	91.448	Nannospalax_galili
ENSPTRG00000012771	SF3B1	99	81.714	ENSNBRG00000015816	sf3b1	99	81.714	Neolamprologus_brichardi
ENSPTRG00000012771	SF3B1	99	91.455	ENSNLEG00000006861	SF3B1	99	91.455	Nomascus_leucogenys
ENSPTRG00000012771	SF3B1	60	100.000	ENSMEUG00000015848	-	62	100.000	Notamacropus_eugenii
ENSPTRG00000012771	SF3B1	99	81.678	ENSOPRG00000008596	SF3B1	99	81.678	Ochotona_princeps
ENSPTRG00000012771	SF3B1	99	91.455	ENSODEG00000011153	-	99	91.455	Octodon_degus
ENSPTRG00000012771	SF3B1	99	85.344	ENSONIG00000013758	sf3b1	99	85.267	Oreochromis_niloticus
ENSPTRG00000012771	SF3B1	84	88.777	ENSOCUG00000012722	-	96	88.777	Oryctolagus_cuniculus
ENSPTRG00000012771	SF3B1	99	86.107	ENSORLG00000020219	sf3b1	99	86.107	Oryzias_latipes
ENSPTRG00000012771	SF3B1	99	86.107	ENSORLG00020001746	sf3b1	99	86.107	Oryzias_latipes_hni
ENSPTRG00000012771	SF3B1	62	79.616	ENSORLG00015001759	sf3b1	97	79.616	Oryzias_latipes_hsok
ENSPTRG00000012771	SF3B1	99	86.117	ENSOMEG00000019231	sf3b1	99	86.117	Oryzias_melastigma
ENSPTRG00000012771	SF3B1	99	91.378	ENSOARG00000015374	SF3B1	99	91.378	Ovis_aries
ENSPTRG00000012771	SF3B1	100	91.488	ENSPPAG00000035007	SF3B1	100	91.488	Pan_paniscus
ENSPTRG00000012771	SF3B1	99	91.455	ENSPPRG00000009090	SF3B1	99	91.455	Panthera_pardus
ENSPTRG00000012771	SF3B1	99	91.455	ENSPTIG00000021557	SF3B1	99	91.455	Panthera_tigris_altaica
ENSPTRG00000012771	SF3B1	99	91.455	ENSPANG00000013417	SF3B1	99	91.455	Papio_anubis
ENSPTRG00000012771	SF3B1	99	87.538	ENSPKIG00000000784	sf3b1	99	87.385	Paramormyrops_kingsleyae
ENSPTRG00000012771	SF3B1	99	90.395	ENSPSIG00000017222	SF3B1	98	90.240	Pelodiscus_sinensis
ENSPTRG00000012771	SF3B1	90	86.029	ENSPMGG00000004330	sf3b1	98	85.859	Periophthalmus_magnuspinnatus
ENSPTRG00000012771	SF3B1	99	91.455	ENSPEMG00000010699	Sf3b1	100	91.455	Peromyscus_maniculatus_bairdii
ENSPTRG00000012771	SF3B1	99	83.295	ENSPMAG00000001311	sf3b1	99	83.448	Petromyzon_marinus
ENSPTRG00000012771	SF3B1	99	90.685	ENSPCIG00000010642	SF3B1	99	90.685	Phascolarctos_cinereus
ENSPTRG00000012771	SF3B1	99	86.052	ENSPFOG00000000073	sf3b1	99	86.052	Poecilia_formosa
ENSPTRG00000012771	SF3B1	99	86.117	ENSPLAG00000002293	sf3b1	99	86.117	Poecilia_latipinna
ENSPTRG00000012771	SF3B1	99	86.117	ENSPMEG00000000446	sf3b1	97	86.117	Poecilia_mexicana
ENSPTRG00000012771	SF3B1	99	86.194	ENSPREG00000019652	sf3b1	99	86.194	Poecilia_reticulata
ENSPTRG00000012771	SF3B1	99	89.680	ENSPPYG00000013044	SF3B1	99	89.680	Pongo_abelii
ENSPTRG00000012771	SF3B1	99	91.301	ENSPCAG00000009292	SF3B1	99	91.301	Procavia_capensis
ENSPTRG00000012771	SF3B1	99	91.378	ENSPCOG00000024074	SF3B1	99	91.378	Propithecus_coquereli
ENSPTRG00000012771	SF3B1	99	91.455	ENSPVAG00000008302	SF3B1	99	91.455	Pteropus_vampyrus
ENSPTRG00000012771	SF3B1	99	85.344	ENSPNYG00000014939	sf3b1	99	85.267	Pundamilia_nyererei
ENSPTRG00000012771	SF3B1	99	86.489	ENSPNAG00000008288	sf3b1	99	86.489	Pygocentrus_nattereri
ENSPTRG00000012771	SF3B1	99	91.455	ENSRNOG00000013516	Sf3b1	99	91.455	Rattus_norvegicus
ENSPTRG00000012771	SF3B1	99	87.914	ENSRBIG00000026096	SF3B1	99	87.914	Rhinopithecus_bieti
ENSPTRG00000012771	SF3B1	99	91.455	ENSRROG00000031308	SF3B1	99	91.455	Rhinopithecus_roxellana
ENSPTRG00000012771	SF3B1	99	91.455	ENSSBOG00000020080	SF3B1	99	91.455	Saimiri_boliviensis_boliviensis
ENSPTRG00000012771	SF3B1	99	90.762	ENSSHAG00000017564	SF3B1	99	90.762	Sarcophilus_harrisii
ENSPTRG00000012771	SF3B1	99	87.185	ENSSFOG00015021535	sf3b1	99	87.338	Scleropages_formosus
ENSPTRG00000012771	SF3B1	99	85.540	ENSSMAG00000013977	sf3b1	98	85.388	Scophthalmus_maximus
ENSPTRG00000012771	SF3B1	99	85.954	ENSSDUG00000017422	sf3b1	99	85.954	Seriola_dumerili
ENSPTRG00000012771	SF3B1	99	85.878	ENSSLDG00000019495	sf3b1	99	85.878	Seriola_lalandi_dorsalis
ENSPTRG00000012771	SF3B1	78	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSPTRG00000012771	SF3B1	99	90.531	ENSSPUG00000000410	SF3B1	99	90.377	Sphenodon_punctatus
ENSPTRG00000012771	SF3B1	99	86.260	ENSSPAG00000010451	sf3b1	98	86.260	Stegastes_partitus
ENSPTRG00000012771	SF3B1	91	90.203	ENSSSCG00000016075	SF3B1	100	90.448	Sus_scrofa
ENSPTRG00000012771	SF3B1	99	90.762	ENSTGUG00000010553	SF3B1	99	90.608	Taeniopygia_guttata
ENSPTRG00000012771	SF3B1	99	86.107	ENSTRUG00000015534	sf3b1	99	85.954	Takifugu_rubripes
ENSPTRG00000012771	SF3B1	85	100.000	ENSTBEG00000008714	SF3B1	92	100.000	Tupaia_belangeri
ENSPTRG00000012771	SF3B1	90	94.185	ENSTTRG00000003414	SF3B1	90	94.185	Tursiops_truncatus
ENSPTRG00000012771	SF3B1	84	99.190	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSPTRG00000012771	SF3B1	99	91.455	ENSUMAG00000020945	SF3B1	99	91.455	Ursus_maritimus
ENSPTRG00000012771	SF3B1	91	100.000	ENSVPAG00000005798	SF3B1	89	100.000	Vicugna_pacos
ENSPTRG00000012771	SF3B1	99	91.455	ENSVVUG00000025948	SF3B1	94	91.455	Vulpes_vulpes
ENSPTRG00000012771	SF3B1	99	88.376	ENSXETG00000013339	sf3b1	99	88.376	Xenopus_tropicalis
ENSPTRG00000012771	SF3B1	99	84.992	ENSXCOG00000018086	sf3b1	99	84.992	Xiphophorus_couchianus
ENSPTRG00000012771	SF3B1	99	86.117	ENSXMAG00000007369	sf3b1	99	86.321	Xiphophorus_maculatus