EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000013025 (Gene tree)
Gene ID: 460006
Gene Symbol: NCL
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 9828 bases
Position: chr2B:122545925-122555752
Accession: 2060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000022272	RRM_1	PF00076.22	5.9e-58	1	4
ENSPTRP00000022272	RRM_1	PF00076.22	5.9e-58	2	4
ENSPTRP00000022272	RRM_1	PF00076.22	5.9e-58	3	4
ENSPTRP00000022272	RRM_1	PF00076.22	5.9e-58	4	4
ENSPTRP00000069389	RRM_1	PF00076.22	4.6e-45	1	3
ENSPTRP00000069389	RRM_1	PF00076.22	4.6e-45	2	3
ENSPTRP00000069389	RRM_1	PF00076.22	4.6e-45	3	3
ENSPTRP00000082591	RRM_1	PF00076.22	8.7e-40	1	2
ENSPTRP00000082591	RRM_1	PF00076.22	8.7e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000024147	-	2806	XM_516145	ENSPTRP00000022272	711 (aa)	XP_516145	H2QJL2
ENSPTRT00000091403	-	1449	-	ENSPTRP00000082591	482 (aa)	-	A0A2I3T021
ENSPTRT00000108334	-	1539	-	ENSPTRP00000069389	512 (aa)	-	A0A2I3RXR3

Gene Model

Click here to download ENSPTRG00000013025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000013025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000013025	NCL	57	38.667	ENSPTRG00000023495	TIA1	73	33.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000013025	NCL	100	99.578	ENSG00000115053	NCL	100	99.578	Homo_sapiens
ENSPTRG00000013025	NCL	81	88.383	ENSAMEG00000016289	NCL	92	89.650	Ailuropoda_melanoleuca
ENSPTRG00000013025	NCL	92	92.190	ENSANAG00000035814	-	92	92.519	Aotus_nancymaae
ENSPTRG00000013025	NCL	97	78.621	ENSANAG00000024378	-	85	87.879	Aotus_nancymaae
ENSPTRG00000013025	NCL	98	76.050	ENSBTAG00000051320	-	86	78.019	Bos_taurus
ENSPTRG00000013025	NCL	100	81.405	ENSBTAG00000050728	-	89	90.164	Bos_taurus
ENSPTRG00000013025	NCL	88	79.905	ENSBTAG00000026909	-	95	92.642	Bos_taurus
ENSPTRG00000013025	NCL	93	84.783	ENSBTAG00000016174	NCL	92	83.333	Bos_taurus
ENSPTRG00000013025	NCL	92	90.729	ENSCJAG00000013538	NCL	92	90.122	Callithrix_jacchus
ENSPTRG00000013025	NCL	100	91.213	ENSCAFG00000011037	NCL	92	90.868	Canis_familiaris
ENSPTRG00000013025	NCL	93	87.698	ENSCAFG00020023145	NCL	87	90.741	Canis_lupus_dingo
ENSPTRG00000013025	NCL	92	80.670	ENSCHIG00000026149	-	93	78.539	Capra_hircus
ENSPTRG00000013025	NCL	93	84.524	ENSCHIG00000010894	-	98	85.736	Capra_hircus
ENSPTRG00000013025	NCL	91	72.470	ENSCHIG00000012143	-	84	77.602	Capra_hircus
ENSPTRG00000013025	NCL	100	84.836	ENSCHIG00000021052	-	100	96.503	Capra_hircus
ENSPTRG00000013025	NCL	95	86.655	ENSTSYG00000029779	-	98	87.457	Carlito_syrichta
ENSPTRG00000013025	NCL	90	75.469	ENSTSYG00000036886	-	91	75.920	Carlito_syrichta
ENSPTRG00000013025	NCL	92	89.024	ENSTSYG00000004355	-	92	89.634	Carlito_syrichta
ENSPTRG00000013025	NCL	100	91.857	ENSCAPG00000009405	NCL	91	79.939	Cavia_aperea
ENSPTRG00000013025	NCL	100	91.857	ENSCPOG00000001034	NCL	92	83.156	Cavia_porcellus
ENSPTRG00000013025	NCL	82	77.411	ENSCCAG00000000551	-	82	89.552	Cebus_capucinus
ENSPTRG00000013025	NCL	81	87.699	ENSCCAG00000021040	-	100	92.308	Cebus_capucinus
ENSPTRG00000013025	NCL	100	98.596	ENSCATG00000037033	NCL	100	98.596	Cercocebus_atys
ENSPTRG00000013025	NCL	100	91.857	ENSCLAG00000013080	NCL	92	84.522	Chinchilla_lanigera
ENSPTRG00000013025	NCL	81	90.455	ENSCSAG00000006660	NCL	95	99.773	Chlorocebus_sabaeus
ENSPTRG00000013025	NCL	81	67.123	ENSCHOG00000012860	NCL	88	74.603	Choloepus_hoffmanni
ENSPTRG00000013025	NCL	74	100.000	ENSCANG00000036756	NCL	94	100.000	Colobus_angolensis_palliatus
ENSPTRG00000013025	NCL	92	66.717	ENSCGRG00001022350	-	95	66.515	Cricetulus_griseus_chok1gshd
ENSPTRG00000013025	NCL	92	81.003	ENSCGRG00001024315	-	91	82.067	Cricetulus_griseus_chok1gshd
ENSPTRG00000013025	NCL	85	83.034	ENSCGRG00000017894	-	88	82.708	Cricetulus_griseus_crigri
ENSPTRG00000013025	NCL	92	67.018	ENSCGRG00000000507	-	52	83.182	Cricetulus_griseus_crigri
ENSPTRG00000013025	NCL	92	84.674	ENSDNOG00000010783	-	92	84.885	Dasypus_novemcinctus
ENSPTRG00000013025	NCL	100	77.346	ENSDNOG00000046347	-	99	73.157	Dasypus_novemcinctus
ENSPTRG00000013025	NCL	67	69.714	ENSDORG00000023596	-	92	70.108	Dipodomys_ordii
ENSPTRG00000013025	NCL	69	75.134	ENSDORG00000012513	-	91	78.528	Dipodomys_ordii
ENSPTRG00000013025	NCL	72	79.310	ENSETEG00000014756	-	86	90.501	Echinops_telfairi
ENSPTRG00000013025	NCL	81	57.045	ENSETEG00000008553	-	88	61.937	Echinops_telfairi
ENSPTRG00000013025	NCL	69	79.737	ENSETEG00000018937	-	85	80.164	Echinops_telfairi
ENSPTRG00000013025	NCL	72	69.048	ENSETEG00000008139	-	89	66.757	Echinops_telfairi
ENSPTRG00000013025	NCL	98	91.158	ENSEASG00005008488	NCL	100	90.947	Equus_asinus_asinus
ENSPTRG00000013025	NCL	100	90.000	ENSECAG00000021868	NCL	62	92.986	Equus_caballus
ENSPTRG00000013025	NCL	69	80.475	ENSEEUG00000005913	NCL	85	81.908	Erinaceus_europaeus
ENSPTRG00000013025	NCL	100	90.669	ENSFCAG00000027622	NCL	92	89.970	Felis_catus
ENSPTRG00000013025	NCL	100	92.182	ENSFDAG00000014291	NCL	92	86.769	Fukomys_damarensis
ENSPTRG00000013025	NCL	100	99.437	ENSGGOG00000004300	NCL	100	99.437	Gorilla_gorilla
ENSPTRG00000013025	NCL	88	66.351	ENSHGLG00000005133	-	93	74.825	Heterocephalus_glaber_female
ENSPTRG00000013025	NCL	100	92.182	ENSHGLG00000002031	-	100	87.552	Heterocephalus_glaber_female
ENSPTRG00000013025	NCL	91	77.607	ENSHGLG00000011069	-	55	92.273	Heterocephalus_glaber_female
ENSPTRG00000013025	NCL	100	91.857	ENSHGLG00100014537	-	100	86.993	Heterocephalus_glaber_male
ENSPTRG00000013025	NCL	84	82.482	ENSHGLG00100000745	-	82	85.942	Heterocephalus_glaber_male
ENSPTRG00000013025	NCL	100	82.353	ENSJJAG00000016165	Ncl	91	79.416	Jaculus_jaculus
ENSPTRG00000013025	NCL	91	76.113	ENSLAFG00000013061	NCL	91	73.933	Loxodonta_africana
ENSPTRG00000013025	NCL	100	98.878	ENSMFAG00000040385	NCL	100	98.878	Macaca_fascicularis
ENSPTRG00000013025	NCL	100	98.965	ENSMMUG00000018094	NCL	99	100.000	Macaca_mulatta
ENSPTRG00000013025	NCL	99	98.954	ENSMNEG00000023839	NCL	99	100.000	Macaca_nemestrina
ENSPTRG00000013025	NCL	100	98.736	ENSMLEG00000028935	NCL	100	98.736	Mandrillus_leucophaeus
ENSPTRG00000013025	NCL	89	75.984	ENSMICG00000029975	-	86	82.979	Microcebus_murinus
ENSPTRG00000013025	NCL	100	90.884	ENSMICG00000002538	-	92	90.046	Microcebus_murinus
ENSPTRG00000013025	NCL	92	85.993	MGP_CAROLIEiJ_G0014362	Ncl	61	83.484	Mus_caroli
ENSPTRG00000013025	NCL	92	85.993	ENSMUSG00000026234	Ncl	75	89.091	Mus_musculus
ENSPTRG00000013025	NCL	92	76.399	MGP_PahariEiJ_G0027599	Ncl	78	89.545	Mus_pahari
ENSPTRG00000013025	NCL	98	85.993	MGP_SPRETEiJ_G0015164	Ncl	92	78.604	Mus_spretus
ENSPTRG00000013025	NCL	99	83.704	ENSMLUG00000014547	NCL	91	98.636	Myotis_lucifugus
ENSPTRG00000013025	NCL	92	80.602	ENSNGAG00000002454	-	91	80.451	Nannospalax_galili
ENSPTRG00000013025	NCL	77	74.016	ENSNGAG00000006188	-	59	75.735	Nannospalax_galili
ENSPTRG00000013025	NCL	100	79.337	ENSNLEG00000014107	-	95	86.606	Nomascus_leucogenys
ENSPTRG00000013025	NCL	87	87.347	ENSODEG00000002748	-	90	94.064	Octodon_degus
ENSPTRG00000013025	NCL	99	65.474	ENSODEG00000007803	-	90	66.429	Octodon_degus
ENSPTRG00000013025	NCL	81	82.232	ENSODEG00000003281	-	91	80.518	Octodon_degus
ENSPTRG00000013025	NCL	100	69.087	ENSODEG00000002441	-	84	85.593	Octodon_degus
ENSPTRG00000013025	NCL	100	90.228	ENSOCUG00000004312	NCL	100	80.392	Oryctolagus_cuniculus
ENSPTRG00000013025	NCL	73	92.713	ENSOGAG00000027852	NCL	51	99.545	Otolemur_garnettii
ENSPTRG00000013025	NCL	91	79.879	ENSOARG00000020709	-	92	77.912	Ovis_aries
ENSPTRG00000013025	NCL	70	89.545	ENSOARG00000013710	-	73	88.009	Ovis_aries
ENSPTRG00000013025	NCL	74	73.622	ENSOARG00000004072	-	92	70.339	Ovis_aries
ENSPTRG00000013025	NCL	88	86.458	ENSOARG00000013270	-	100	90.110	Ovis_aries
ENSPTRG00000013025	NCL	100	99.793	ENSPPAG00000011619	NCL	100	99.793	Pan_paniscus
ENSPTRG00000013025	NCL	100	93.485	ENSPPRG00000012603	NCL	92	90.107	Panthera_pardus
ENSPTRG00000013025	NCL	100	93.485	ENSPTIG00000010393	NCL	91	89.247	Panthera_tigris_altaica
ENSPTRG00000013025	NCL	100	98.878	ENSPANG00000010292	NCL	100	98.878	Papio_anubis
ENSPTRG00000013025	NCL	100	92.157	ENSPPYG00000013265	NCL	92	91.463	Pongo_abelii
ENSPTRG00000013025	NCL	91	86.885	ENSPCOG00000004160	-	94	83.564	Propithecus_coquereli
ENSPTRG00000013025	NCL	91	91.093	ENSPCOG00000003051	-	91	90.826	Propithecus_coquereli
ENSPTRG00000013025	NCL	92	88.450	ENSPVAG00000000297	NCL	100	88.301	Pteropus_vampyrus
ENSPTRG00000013025	NCL	92	79.638	ENSRNOG00000018273	Ncl	92	79.940	Rattus_norvegicus
ENSPTRG00000013025	NCL	72	99.077	ENSRBIG00000035396	-	86	99.077	Rhinopithecus_bieti
ENSPTRG00000013025	NCL	100	92.567	ENSRBIG00000037525	-	91	91.104	Rhinopithecus_bieti
ENSPTRG00000013025	NCL	99	97.647	ENSRROG00000036103	-	99	96.254	Rhinopithecus_roxellana
ENSPTRG00000013025	NCL	100	98.034	ENSRROG00000028756	-	100	98.117	Rhinopithecus_roxellana
ENSPTRG00000013025	NCL	100	87.622	ENSSBOG00000027549	-	94	90.888	Saimiri_boliviensis_boliviensis
ENSPTRG00000013025	NCL	92	94.487	ENSSBOG00000029193	-	100	94.951	Saimiri_boliviensis_boliviensis
ENSPTRG00000013025	NCL	87	73.923	ENSSBOG00000023094	-	89	72.143	Saimiri_boliviensis_boliviensis
ENSPTRG00000013025	NCL	79	91.176	ENSSSCG00000016275	NCL	92	87.688	Sus_scrofa
ENSPTRG00000013025	NCL	71	91.753	ENSTBEG00000001546	-	85	81.475	Tupaia_belangeri
ENSPTRG00000013025	NCL	81	77.679	ENSTBEG00000002469	-	66	82.286	Tupaia_belangeri
ENSPTRG00000013025	NCL	92	88.244	ENSTTRG00000009094	NCL	91	88.650	Tursiops_truncatus
ENSPTRG00000013025	NCL	84	93.160	ENSUAMG00000005639	NCL	100	94.235	Ursus_americanus
ENSPTRG00000013025	NCL	81	88.383	ENSUMAG00000015789	NCL	92	89.787	Ursus_maritimus
ENSPTRG00000013025	NCL	86	88.235	ENSVPAG00000001796	NCL	69	88.732	Vicugna_pacos
ENSPTRG00000013025	NCL	100	93.160	ENSVVUG00000025564	NCL	100	87.849	Vulpes_vulpes