EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000013308 (Gene tree)
Gene ID: 458131
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 86681 bases
Position: chr20:21387541-21474221
Accession: 6307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000022823	XRN_N	PF03159.18	1.5e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000084780	-	1065	-	ENSPTRP00000068072	354 (aa)	-	A0A2I3RUS7
ENSPTRT00000024733	-	3760	XM_009436912	ENSPTRP00000022823	950 (aa)	XP_009435187	H2QK18

Gene Model

Click here to download ENSPTRG00000013308's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03008	Ribosome biogenesis in eukaryotes	KEGG
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000013308's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000013308	XRN2	100	99.789	ENSG00000088930	XRN2	100	99.789	Homo_sapiens
ENSPTRG00000013308	XRN2	97	71.489	ENSAPOG00000009818	xrn2	100	70.336	Acanthochromis_polyacanthus
ENSPTRG00000013308	XRN2	100	98.105	ENSAMEG00000012581	XRN2	100	98.105	Ailuropoda_melanoleuca
ENSPTRG00000013308	XRN2	90	70.421	ENSACIG00000015047	xrn2	95	74.280	Amphilophus_citrinellus
ENSPTRG00000013308	XRN2	97	72.009	ENSAOCG00000023632	xrn2	100	70.863	Amphiprion_ocellaris
ENSPTRG00000013308	XRN2	97	71.838	ENSAPEG00000014871	xrn2	100	70.672	Amphiprion_percula
ENSPTRG00000013308	XRN2	95	71.398	ENSATEG00000001273	xrn2	97	70.719	Anabas_testudineus
ENSPTRG00000013308	XRN2	97	83.100	ENSAPLG00000013869	XRN2	99	83.531	Anas_platyrhynchos
ENSPTRG00000013308	XRN2	100	80.538	ENSACAG00000005565	XRN2	100	80.538	Anolis_carolinensis
ENSPTRG00000013308	XRN2	100	98.737	ENSANAG00000020126	XRN2	100	98.737	Aotus_nancymaae
ENSPTRG00000013308	XRN2	90	73.642	ENSACLG00000010522	xrn2	96	75.833	Astatotilapia_calliptera
ENSPTRG00000013308	XRN2	100	71.414	ENSAMXG00000018301	xrn2	100	71.414	Astyanax_mexicanus
ENSPTRG00000013308	XRN2	100	96.004	ENSBTAG00000011304	XRN2	100	96.004	Bos_taurus
ENSPTRG00000013308	XRN2	87	55.814	WBGene00006964	xrn-2	89	55.090	Caenorhabditis_elegans
ENSPTRG00000013308	XRN2	100	98.842	ENSCJAG00000005611	XRN2	100	98.842	Callithrix_jacchus
ENSPTRG00000013308	XRN2	100	98.211	ENSCAFG00000005185	XRN2	100	98.211	Canis_familiaris
ENSPTRG00000013308	XRN2	100	98.211	ENSCAFG00020027479	XRN2	100	98.211	Canis_lupus_dingo
ENSPTRG00000013308	XRN2	100	96.425	ENSCHIG00000006921	XRN2	100	96.425	Capra_hircus
ENSPTRG00000013308	XRN2	100	97.263	ENSTSYG00000008315	XRN2	100	97.263	Carlito_syrichta
ENSPTRG00000013308	XRN2	97	82.201	ENSCAPG00000010773	XRN2	99	82.201	Cavia_aperea
ENSPTRG00000013308	XRN2	100	97.789	ENSCPOG00000009407	XRN2	100	97.789	Cavia_porcellus
ENSPTRG00000013308	XRN2	100	99.895	ENSCATG00000040350	XRN2	100	99.895	Cercocebus_atys
ENSPTRG00000013308	XRN2	100	98.105	ENSCLAG00000013419	XRN2	100	98.105	Chinchilla_lanigera
ENSPTRG00000013308	XRN2	100	99.895	ENSCSAG00000011094	XRN2	100	99.895	Chlorocebus_sabaeus
ENSPTRG00000013308	XRN2	68	98.925	ENSCHOG00000013404	XRN2	70	98.925	Choloepus_hoffmanni
ENSPTRG00000013308	XRN2	100	84.479	ENSCPBG00000023533	XRN2	100	85.104	Chrysemys_picta_bellii
ENSPTRG00000013308	XRN2	86	60.263	ENSCING00000022336	-	100	60.621	Ciona_intestinalis
ENSPTRG00000013308	XRN2	87	58.950	ENSCSAVG00000011217	-	100	61.407	Ciona_savignyi
ENSPTRG00000013308	XRN2	100	99.895	ENSCANG00000040240	XRN2	100	99.895	Colobus_angolensis_palliatus
ENSPTRG00000013308	XRN2	98	97.094	ENSCGRG00001010676	Xrn2	99	97.094	Cricetulus_griseus_chok1gshd
ENSPTRG00000013308	XRN2	97	96.224	ENSCGRG00000006378	Xrn2	99	96.224	Cricetulus_griseus_crigri
ENSPTRG00000013308	XRN2	54	72.157	ENSCSEG00000005628	xrn2	100	72.157	Cynoglossus_semilaevis
ENSPTRG00000013308	XRN2	89	71.494	ENSCVAG00000018999	xrn2	98	76.762	Cyprinodon_variegatus
ENSPTRG00000013308	XRN2	100	69.713	ENSDARG00000101900	xrn2	96	77.629	Danio_rerio
ENSPTRG00000013308	XRN2	100	97.579	ENSDNOG00000001895	XRN2	100	97.579	Dasypus_novemcinctus
ENSPTRG00000013308	XRN2	100	95.789	ENSDORG00000005434	Xrn2	100	95.789	Dipodomys_ordii
ENSPTRG00000013308	XRN2	87	56.832	FBgn0031868	Rat1	87	56.711	Drosophila_melanogaster
ENSPTRG00000013308	XRN2	100	83.895	ENSETEG00000001740	XRN2	100	83.895	Echinops_telfairi
ENSPTRG00000013308	XRN2	84	71.515	ENSEBUG00000016136	xrn2	100	71.515	Eptatretus_burgeri
ENSPTRG00000013308	XRN2	100	97.789	ENSEASG00005002484	XRN2	100	97.789	Equus_asinus_asinus
ENSPTRG00000013308	XRN2	99	97.994	ENSECAG00000018988	XRN2	100	96.074	Equus_caballus
ENSPTRG00000013308	XRN2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
ENSPTRG00000013308	XRN2	100	70.287	ENSELUG00000000552	xrn2	100	70.697	Esox_lucius
ENSPTRG00000013308	XRN2	100	98.000	ENSFCAG00000007970	XRN2	100	98.000	Felis_catus
ENSPTRG00000013308	XRN2	100	82.600	ENSFALG00000004508	XRN2	100	83.019	Ficedula_albicollis
ENSPTRG00000013308	XRN2	100	97.895	ENSFDAG00000016311	XRN2	100	97.895	Fukomys_damarensis
ENSPTRG00000013308	XRN2	54	69.466	ENSFHEG00000013039	xrn2	98	69.466	Fundulus_heteroclitus
ENSPTRG00000013308	XRN2	86	72.661	ENSGMOG00000013436	xrn2	100	72.661	Gadus_morhua
ENSPTRG00000013308	XRN2	100	82.723	ENSGALG00000008372	XRN2	100	82.723	Gallus_gallus
ENSPTRG00000013308	XRN2	89	73.721	ENSGAFG00000014284	xrn2	98	73.721	Gambusia_affinis
ENSPTRG00000013308	XRN2	87	74.399	ENSGACG00000011870	xrn2	100	74.399	Gasterosteus_aculeatus
ENSPTRG00000013308	XRN2	100	84.271	ENSGAGG00000004884	XRN2	100	84.896	Gopherus_agassizii
ENSPTRG00000013308	XRN2	100	100.000	ENSGGOG00000013738	XRN2	100	100.000	Gorilla_gorilla
ENSPTRG00000013308	XRN2	54	74.280	ENSHBUG00000005077	xrn2	96	75.833	Haplochromis_burtoni
ENSPTRG00000013308	XRN2	100	96.737	ENSHGLG00000014831	XRN2	100	96.737	Heterocephalus_glaber_female
ENSPTRG00000013308	XRN2	100	96.737	ENSHGLG00100013130	XRN2	100	96.737	Heterocephalus_glaber_male
ENSPTRG00000013308	XRN2	99	67.915	ENSHCOG00000011994	xrn2	99	68.826	Hippocampus_comes
ENSPTRG00000013308	XRN2	100	70.031	ENSIPUG00000006639	xrn2	100	70.031	Ictalurus_punctatus
ENSPTRG00000013308	XRN2	100	98.421	ENSSTOG00000000589	XRN2	100	98.421	Ictidomys_tridecemlineatus
ENSPTRG00000013308	XRN2	100	97.579	ENSJJAG00000022128	Xrn2	100	97.579	Jaculus_jaculus
ENSPTRG00000013308	XRN2	54	79.492	ENSLBEG00000010041	xrn2	100	79.492	Labrus_bergylta
ENSPTRG00000013308	XRN2	94	76.863	ENSLACG00000008307	XRN2	99	79.387	Latimeria_chalumnae
ENSPTRG00000013308	XRN2	99	72.699	ENSLOCG00000016874	xrn2	100	72.699	Lepisosteus_oculatus
ENSPTRG00000013308	XRN2	100	96.316	ENSLAFG00000014624	XRN2	100	96.316	Loxodonta_africana
ENSPTRG00000013308	XRN2	100	99.895	ENSMFAG00000038122	XRN2	100	99.895	Macaca_fascicularis
ENSPTRG00000013308	XRN2	100	99.895	ENSMMUG00000011405	XRN2	100	99.895	Macaca_mulatta
ENSPTRG00000013308	XRN2	100	99.789	ENSMNEG00000040626	XRN2	100	99.789	Macaca_nemestrina
ENSPTRG00000013308	XRN2	100	99.789	ENSMLEG00000041897	XRN2	100	99.789	Mandrillus_leucophaeus
ENSPTRG00000013308	XRN2	95	72.470	ENSMAMG00000008633	xrn2	98	70.964	Mastacembelus_armatus
ENSPTRG00000013308	XRN2	90	75.491	ENSMZEG00005022362	xrn2	97	75.491	Maylandia_zebra
ENSPTRG00000013308	XRN2	99	81.250	ENSMGAG00000003196	XRN2	99	81.250	Meleagris_gallopavo
ENSPTRG00000013308	XRN2	100	97.158	ENSMAUG00000021842	Xrn2	100	97.158	Mesocricetus_auratus
ENSPTRG00000013308	XRN2	100	97.579	ENSMICG00000008126	XRN2	100	97.579	Microcebus_murinus
ENSPTRG00000013308	XRN2	100	96.421	ENSMOCG00000012588	Xrn2	100	96.421	Microtus_ochrogaster
ENSPTRG00000013308	XRN2	89	73.654	ENSMMOG00000017576	xrn2	96	74.053	Mola_mola
ENSPTRG00000013308	XRN2	100	91.263	ENSMODG00000006163	XRN2	100	91.263	Monodelphis_domestica
ENSPTRG00000013308	XRN2	91	71.910	ENSMALG00000011355	xrn2	99	71.910	Monopterus_albus
ENSPTRG00000013308	XRN2	100	96.004	MGP_CAROLIEiJ_G0024400	Xrn2	100	96.004	Mus_caroli
ENSPTRG00000013308	XRN2	100	96.215	ENSMUSG00000027433	Xrn2	100	96.215	Mus_musculus
ENSPTRG00000013308	XRN2	100	96.004	MGP_PahariEiJ_G0025843	Xrn2	100	96.004	Mus_pahari
ENSPTRG00000013308	XRN2	100	96.215	MGP_SPRETEiJ_G0025318	Xrn2	100	96.215	Mus_spretus
ENSPTRG00000013308	XRN2	100	96.587	ENSMPUG00000001198	XRN2	93	96.587	Mustela_putorius_furo
ENSPTRG00000013308	XRN2	100	97.789	ENSMLUG00000001536	XRN2	100	97.789	Myotis_lucifugus
ENSPTRG00000013308	XRN2	100	97.579	ENSNGAG00000018138	Xrn2	100	97.579	Nannospalax_galili
ENSPTRG00000013308	XRN2	90	75.694	ENSNBRG00000008062	xrn2	97	75.694	Neolamprologus_brichardi
ENSPTRG00000013308	XRN2	100	99.789	ENSNLEG00000009991	XRN2	100	99.789	Nomascus_leucogenys
ENSPTRG00000013308	XRN2	66	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
ENSPTRG00000013308	XRN2	75	78.534	ENSOPRG00000001397	-	77	78.534	Ochotona_princeps
ENSPTRG00000013308	XRN2	98	88.781	ENSODEG00000000860	-	99	89.213	Octodon_degus
ENSPTRG00000013308	XRN2	100	97.789	ENSODEG00000010745	-	100	97.789	Octodon_degus
ENSPTRG00000013308	XRN2	100	71.649	ENSONIG00000018720	xrn2	100	71.856	Oreochromis_niloticus
ENSPTRG00000013308	XRN2	100	91.071	ENSOANG00000015673	XRN2	100	91.071	Ornithorhynchus_anatinus
ENSPTRG00000013308	XRN2	100	98.526	ENSOCUG00000013468	XRN2	100	98.526	Oryctolagus_cuniculus
ENSPTRG00000013308	XRN2	98	70.301	ENSORLG00000017213	xrn2	97	74.942	Oryzias_latipes
ENSPTRG00000013308	XRN2	98	70.301	ENSORLG00020001824	xrn2	100	70.000	Oryzias_latipes_hni
ENSPTRG00000013308	XRN2	98	70.093	ENSORLG00015019747	xrn2	100	69.796	Oryzias_latipes_hsok
ENSPTRG00000013308	XRN2	90	73.988	ENSOMEG00000019820	xrn2	100	69.543	Oryzias_melastigma
ENSPTRG00000013308	XRN2	100	97.476	ENSOGAG00000001068	XRN2	100	97.476	Otolemur_garnettii
ENSPTRG00000013308	XRN2	97	96.328	ENSOARG00000004443	XRN2	100	96.328	Ovis_aries
ENSPTRG00000013308	XRN2	100	100.000	ENSPPAG00000033549	XRN2	100	100.000	Pan_paniscus
ENSPTRG00000013308	XRN2	100	98.000	ENSPPRG00000008732	XRN2	100	98.000	Panthera_pardus
ENSPTRG00000013308	XRN2	97	97.946	ENSPTIG00000015683	XRN2	97	97.946	Panthera_tigris_altaica
ENSPTRG00000013308	XRN2	100	99.895	ENSPANG00000018088	XRN2	100	99.895	Papio_anubis
ENSPTRG00000013308	XRN2	100	70.624	ENSPKIG00000016889	xrn2	100	70.624	Paramormyrops_kingsleyae
ENSPTRG00000013308	XRN2	81	86.979	ENSPSIG00000014666	XRN2	100	86.979	Pelodiscus_sinensis
ENSPTRG00000013308	XRN2	100	96.421	ENSPEMG00000000111	Xrn2	100	96.421	Peromyscus_maniculatus_bairdii
ENSPTRG00000013308	XRN2	100	69.990	ENSPFOG00000004182	xrn2	99	70.393	Poecilia_formosa
ENSPTRG00000013308	XRN2	89	74.419	ENSPLAG00000007351	xrn2	96	74.419	Poecilia_latipinna
ENSPTRG00000013308	XRN2	94	68.335	ENSPMEG00000011798	xrn2	99	69.206	Poecilia_mexicana
ENSPTRG00000013308	XRN2	89	74.302	ENSPREG00000012452	xrn2	99	72.727	Poecilia_reticulata
ENSPTRG00000013308	XRN2	100	99.368	ENSPPYG00000010755	XRN2	100	99.368	Pongo_abelii
ENSPTRG00000013308	XRN2	100	91.387	ENSPCAG00000011191	XRN2	100	91.387	Procavia_capensis
ENSPTRG00000013308	XRN2	100	91.158	ENSPCOG00000016468	XRN2	100	91.158	Propithecus_coquereli
ENSPTRG00000013308	XRN2	93	96.049	ENSPVAG00000004596	XRN2	93	96.049	Pteropus_vampyrus
ENSPTRG00000013308	XRN2	90	73.642	ENSPNYG00000001765	xrn2	97	73.642	Pundamilia_nyererei
ENSPTRG00000013308	XRN2	100	71.429	ENSPNAG00000010956	xrn2	99	71.429	Pygocentrus_nattereri
ENSPTRG00000013308	XRN2	100	96.951	ENSRNOG00000011785	Xrn2	100	96.951	Rattus_norvegicus
ENSPTRG00000013308	XRN2	86	99.756	ENSRBIG00000036193	XRN2	100	99.756	Rhinopithecus_bieti
ENSPTRG00000013308	XRN2	100	99.895	ENSRROG00000044400	XRN2	90	99.895	Rhinopithecus_roxellana
ENSPTRG00000013308	XRN2	77	48.069	YOR048C	RAT1	63	53.846	Saccharomyces_cerevisiae
ENSPTRG00000013308	XRN2	100	99.053	ENSSBOG00000021014	XRN2	100	99.053	Saimiri_boliviensis_boliviensis
ENSPTRG00000013308	XRN2	100	71.723	ENSSFOG00015001091	xrn2	100	71.723	Scleropages_formosus
ENSPTRG00000013308	XRN2	92	72.799	ENSSMAG00000007834	xrn2	100	68.490	Scophthalmus_maximus
ENSPTRG00000013308	XRN2	91	71.833	ENSSDUG00000012802	xrn2	99	72.172	Seriola_dumerili
ENSPTRG00000013308	XRN2	93	73.446	ENSSLDG00000021273	xrn2	100	73.446	Seriola_lalandi_dorsalis
ENSPTRG00000013308	XRN2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
ENSPTRG00000013308	XRN2	98	79.487	ENSSPUG00000005485	XRN2	96	79.594	Sphenodon_punctatus
ENSPTRG00000013308	XRN2	100	70.420	ENSSPAG00000016027	xrn2	99	70.420	Stegastes_partitus
ENSPTRG00000013308	XRN2	100	95.789	ENSSSCG00000007109	XRN2	100	95.789	Sus_scrofa
ENSPTRG00000013308	XRN2	100	81.420	ENSTGUG00000007535	XRN2	100	81.837	Taeniopygia_guttata
ENSPTRG00000013308	XRN2	100	68.113	ENSTRUG00000015489	xrn2	100	68.485	Takifugu_rubripes
ENSPTRG00000013308	XRN2	100	71.236	ENSTNIG00000010712	xrn2	100	71.236	Tetraodon_nigroviridis
ENSPTRG00000013308	XRN2	100	97.263	ENSTBEG00000004119	XRN2	100	97.263	Tupaia_belangeri
ENSPTRG00000013308	XRN2	93	97.477	ENSTTRG00000009087	XRN2	93	97.477	Tursiops_truncatus
ENSPTRG00000013308	XRN2	100	98.211	ENSUAMG00000024634	XRN2	100	98.211	Ursus_americanus
ENSPTRG00000013308	XRN2	97	97.946	ENSUMAG00000004012	XRN2	95	97.946	Ursus_maritimus
ENSPTRG00000013308	XRN2	89	89.822	ENSVPAG00000010694	XRN2	91	89.822	Vicugna_pacos
ENSPTRG00000013308	XRN2	100	98.316	ENSVVUG00000012178	XRN2	100	98.316	Vulpes_vulpes
ENSPTRG00000013308	XRN2	100	74.453	ENSXETG00000023501	xrn2	100	75.078	Xenopus_tropicalis
ENSPTRG00000013308	XRN2	100	68.551	ENSXMAG00000000242	xrn2	92	78.589	Xiphophorus_maculatus