EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000013504 (Gene tree)
Gene ID: 469942
Gene Symbol: CHD6
Alias: -
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 210671 bases
Position: chr20:43018502-43229172
Accession: 6078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000079460	ResIII	PF04851.15	2.4e-08	1	1
ENSPTRP00000061977	ResIII	PF04851.15	9.3e-08	1	1
ENSPTRP00000093361	ResIII	PF04851.15	1.3e-07	1	1
ENSPTRP00000023188	ResIII	PF04851.15	1.3e-07	1	1
ENSPTRP00000065368	ResIII	PF04851.15	1.3e-07	1	1
ENSPTRP00000080866	ResIII	PF04851.15	1.3e-07	1	1
ENSPTRP00000091312	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000105341	-	11769	XM_016937924	ENSPTRP00000065368	2715 (aa)	XP_016793413	H2QKD4
ENSPTRT00000098588	-	8106	-	ENSPTRP00000093361	2701 (aa)	-	A0A2I3TVV2
ENSPTRT00000025124	-	10578	XM_016937925	ENSPTRP00000023188	2715 (aa)	XP_016793414	H2QKD4
ENSPTRT00000109325	-	7497	XM_016937930	ENSPTRP00000061977	2377 (aa)	XP_016793419	A0A2I3RBD0
ENSPTRT00000109973	-	8145	-	ENSPTRP00000080866	2714 (aa)	-	A0A2I3SV46
ENSPTRT00000094557	-	11659	XM_016937927	ENSPTRP00000091312	2678 (aa)	XP_016793416	A0A2I3TPZ9
ENSPTRT00000079009	-	1122	-	ENSPTRP00000092914	373 (aa)	-	A0A2I3TUL1
ENSPTRT00000109373	-	1653	-	ENSPTRP00000079460	550 (aa)	-	A0A2I3SSD9

Gene Model

Click here to download ENSPTRG00000013504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000013504's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000013504	CHD6	68	41.053	ENSPTRG00000001220	CHD1L	56	42.293
ENSPTRG00000013504	CHD6	99	71.927	ENSPTRG00000008113	CHD9	91	46.128
ENSPTRG00000013504	CHD6	75	40.048	ENSPTRG00000049876	SMARCA1	50	42.287
ENSPTRG00000013504	CHD6	99	72.344	ENSPTRG00000006124	CHD8	70	62.973
ENSPTRG00000013504	CHD6	76	31.078	ENSPTRG00000023126	SMARCAD1	84	35.385
ENSPTRG00000013504	CHD6	71	41.162	ENSPTRG00000016472	SMARCA5	60	39.937
ENSPTRG00000013504	CHD6	67	36.036	ENSPTRG00000002778	HELLS	83	37.851
ENSPTRG00000013504	CHD6	99	72.894	ENSPTRG00000020286	CHD7	71	65.337
ENSPTRG00000013504	CHD6	84	39.596	ENSPTRG00000007478	CHD2	60	32.463

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000013504	CHD6	100	99.816	ENSG00000124177	CHD6	100	100.000	Homo_sapiens
ENSPTRG00000013504	CHD6	99	82.418	ENSAPOG00000013736	chd6	64	75.963	Acanthochromis_polyacanthus
ENSPTRG00000013504	CHD6	99	93.394	ENSAMEG00000009496	CHD6	100	91.657	Ailuropoda_melanoleuca
ENSPTRG00000013504	CHD6	99	82.051	ENSATEG00000005608	chd6	62	77.464	Anabas_testudineus
ENSPTRG00000013504	CHD6	99	89.541	ENSAPLG00000015592	CHD6	100	72.425	Anas_platyrhynchos
ENSPTRG00000013504	CHD6	98	80.926	ENSACAG00000006842	CHD6	99	68.177	Anolis_carolinensis
ENSPTRG00000013504	CHD6	99	100.000	ENSANAG00000037548	CHD6	100	100.000	Aotus_nancymaae
ENSPTRG00000013504	CHD6	94	86.408	ENSAMXG00000009576	chd6	77	69.726	Astyanax_mexicanus
ENSPTRG00000013504	CHD6	99	93.211	ENSBTAG00000005733	CHD6	100	88.473	Bos_taurus
ENSPTRG00000013504	CHD6	99	99.817	ENSCJAG00000017920	CHD6	100	99.817	Callithrix_jacchus
ENSPTRG00000013504	CHD6	99	93.394	ENSCAFG00000009236	CHD6	100	91.694	Canis_familiaris
ENSPTRG00000013504	CHD6	99	97.985	ENSCAFG00020012906	CHD6	100	97.985	Canis_lupus_dingo
ENSPTRG00000013504	CHD6	99	93.578	ENSCHIG00000017606	CHD6	100	88.546	Capra_hircus
ENSPTRG00000013504	CHD6	84	93.111	ENSTSYG00000014635	CHD6	100	93.111	Carlito_syrichta
ENSPTRG00000013504	CHD6	99	93.394	ENSCPOG00000015641	CHD6	100	91.657	Cavia_porcellus
ENSPTRG00000013504	CHD6	99	100.000	ENSCCAG00000036828	CHD6	100	100.000	Cebus_capucinus
ENSPTRG00000013504	CHD6	99	100.000	ENSCATG00000039248	CHD6	100	100.000	Cercocebus_atys
ENSPTRG00000013504	CHD6	99	93.211	ENSCLAG00000013743	CHD6	100	91.602	Chinchilla_lanigera
ENSPTRG00000013504	CHD6	100	98.270	ENSCSAG00000013997	CHD6	100	98.270	Chlorocebus_sabaeus
ENSPTRG00000013504	CHD6	99	87.156	ENSCHOG00000012647	CHD6	95	89.789	Choloepus_hoffmanni
ENSPTRG00000013504	CHD6	99	89.358	ENSCPBG00000019382	CHD6	99	74.071	Chrysemys_picta_bellii
ENSPTRG00000013504	CHD6	99	100.000	ENSCANG00000043435	CHD6	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000013504	CHD6	99	91.376	ENSCGRG00001002694	Chd6	100	89.710	Cricetulus_griseus_chok1gshd
ENSPTRG00000013504	CHD6	99	97.253	ENSCGRG00000006749	-	100	97.253	Cricetulus_griseus_crigri
ENSPTRG00000013504	CHD6	91	88.956	ENSDARG00000017244	chd6	79	73.678	Danio_rerio
ENSPTRG00000013504	CHD6	99	92.844	ENSDNOG00000004176	CHD6	99	90.822	Dasypus_novemcinctus
ENSPTRG00000013504	CHD6	99	98.352	ENSEASG00005023433	CHD6	100	98.352	Equus_asinus_asinus
ENSPTRG00000013504	CHD6	99	93.394	ENSECAG00000011761	CHD6	100	92.902	Equus_caballus
ENSPTRG00000013504	CHD6	94	85.243	ENSELUG00000012309	chd6	92	80.139	Esox_lucius
ENSPTRG00000013504	CHD6	99	93.394	ENSFCAG00000003572	CHD6	100	91.988	Felis_catus
ENSPTRG00000013504	CHD6	99	88.991	ENSFALG00000012563	CHD6	98	71.377	Ficedula_albicollis
ENSPTRG00000013504	CHD6	99	92.661	ENSFDAG00000013791	CHD6	99	91.808	Fukomys_damarensis
ENSPTRG00000013504	CHD6	89	83.197	ENSGMOG00000011715	chd6	85	70.058	Gadus_morhua
ENSPTRG00000013504	CHD6	94	80.233	ENSGACG00000000037	chd6	93	64.443	Gasterosteus_aculeatus
ENSPTRG00000013504	CHD6	61	94.012	ENSGAGG00000007475	-	79	94.169	Gopherus_agassizii
ENSPTRG00000013504	CHD6	100	99.632	ENSGGOG00000013123	CHD6	100	100.000	Gorilla_gorilla
ENSPTRG00000013504	CHD6	99	81.319	ENSHBUG00000014701	chd6	65	73.482	Haplochromis_burtoni
ENSPTRG00000013504	CHD6	100	91.954	ENSHGLG00000004548	CHD6	100	91.991	Heterocephalus_glaber_female
ENSPTRG00000013504	CHD6	100	91.954	ENSHGLG00100006401	CHD6	100	91.991	Heterocephalus_glaber_male
ENSPTRG00000013504	CHD6	94	85.631	ENSIPUG00000003692	chd6	74	76.316	Ictalurus_punctatus
ENSPTRG00000013504	CHD6	100	92.503	ENSSTOG00000013382	CHD6	100	92.503	Ictidomys_tridecemlineatus
ENSPTRG00000013504	CHD6	99	84.404	ENSLACG00000010881	CHD6	86	77.121	Latimeria_chalumnae
ENSPTRG00000013504	CHD6	99	83.303	ENSLOCG00000007386	chd6	84	75.785	Lepisosteus_oculatus
ENSPTRG00000013504	CHD6	100	92.138	ENSLAFG00000012144	CHD6	100	92.138	Loxodonta_africana
ENSPTRG00000013504	CHD6	99	100.000	ENSMFAG00000032830	CHD6	100	100.000	Macaca_fascicularis
ENSPTRG00000013504	CHD6	99	100.000	ENSMMUG00000020458	CHD6	100	100.000	Macaca_mulatta
ENSPTRG00000013504	CHD6	99	100.000	ENSMNEG00000040847	CHD6	100	100.000	Macaca_nemestrina
ENSPTRG00000013504	CHD6	99	100.000	ENSMLEG00000031965	CHD6	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000013504	CHD6	99	81.685	ENSMAMG00000013111	chd6	62	77.379	Mastacembelus_armatus
ENSPTRG00000013504	CHD6	99	89.011	ENSMGAG00000001121	CHD6	100	72.044	Meleagris_gallopavo
ENSPTRG00000013504	CHD6	99	99.084	ENSMICG00000016641	CHD6	100	99.084	Microcebus_murinus
ENSPTRG00000013504	CHD6	99	91.560	ENSMOCG00000014004	-	98	93.596	Microtus_ochrogaster
ENSPTRG00000013504	CHD6	99	91.743	ENSMODG00000000720	-	99	81.469	Monodelphis_domestica
ENSPTRG00000013504	CHD6	99	91.009	MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	Mus_caroli
ENSPTRG00000013504	CHD6	99	91.009	ENSMUSG00000057133	Chd6	100	94.599	Mus_musculus
ENSPTRG00000013504	CHD6	99	91.193	MGP_PahariEiJ_G0026048	Chd6	100	95.021	Mus_pahari
ENSPTRG00000013504	CHD6	99	91.009	MGP_SPRETEiJ_G0025526	Chd6	100	94.684	Mus_spretus
ENSPTRG00000013504	CHD6	99	93.394	ENSMPUG00000017695	CHD6	100	90.249	Mustela_putorius_furo
ENSPTRG00000013504	CHD6	99	93.028	ENSMLUG00000016247	CHD6	100	91.400	Myotis_lucifugus
ENSPTRG00000013504	CHD6	98	81.550	ENSNBRG00000013839	chd6	79	73.017	Neolamprologus_brichardi
ENSPTRG00000013504	CHD6	99	97.218	ENSNLEG00000006496	CHD6	99	97.218	Nomascus_leucogenys
ENSPTRG00000013504	CHD6	100	87.725	ENSOPRG00000013376	-	100	87.725	Ochotona_princeps
ENSPTRG00000013504	CHD6	99	81.502	ENSONIG00000000393	chd6	88	73.585	Oreochromis_niloticus
ENSPTRG00000013504	CHD6	99	89.541	ENSOANG00000014347	CHD6	99	70.326	Ornithorhynchus_anatinus
ENSPTRG00000013504	CHD6	99	93.578	ENSOCUG00000012394	CHD6	100	89.960	Oryctolagus_cuniculus
ENSPTRG00000013504	CHD6	99	80.699	ENSORLG00020021891	chd6	99	84.571	Oryzias_latipes_hni
ENSPTRG00000013504	CHD6	99	93.211	ENSOGAG00000002427	CHD6	100	91.826	Otolemur_garnettii
ENSPTRG00000013504	CHD6	99	93.578	ENSOARG00000002597	CHD6	100	86.334	Ovis_aries
ENSPTRG00000013504	CHD6	99	93.394	ENSPPRG00000014756	CHD6	100	92.098	Panthera_pardus
ENSPTRG00000013504	CHD6	99	93.394	ENSPTIG00000011094	CHD6	100	91.988	Panthera_tigris_altaica
ENSPTRG00000013504	CHD6	99	99.817	ENSPANG00000025554	CHD6	100	99.817	Papio_anubis
ENSPTRG00000013504	CHD6	94	86.990	ENSPKIG00000005578	chd6	79	72.666	Paramormyrops_kingsleyae
ENSPTRG00000013504	CHD6	99	82.202	ENSPMGG00000014877	chd6	88	77.243	Periophthalmus_magnuspinnatus
ENSPTRG00000013504	CHD6	99	97.253	ENSPEMG00000014672	-	100	97.253	Peromyscus_maniculatus_bairdii
ENSPTRG00000013504	CHD6	99	91.743	ENSPCIG00000028037	CHD6	100	81.195	Phascolarctos_cinereus
ENSPTRG00000013504	CHD6	99	81.319	ENSPLAG00000003128	chd6	68	72.826	Poecilia_latipinna
ENSPTRG00000013504	CHD6	99	81.319	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSPTRG00000013504	CHD6	100	99.264	ENSPPYG00000011016	CHD6	100	99.264	Pongo_abelii
ENSPTRG00000013504	CHD6	99	99.634	ENSPCOG00000001089	CHD6	100	99.634	Propithecus_coquereli
ENSPTRG00000013504	CHD6	99	81.319	ENSPNYG00000022516	chd6	78	74.366	Pundamilia_nyererei
ENSPTRG00000013504	CHD6	94	86.990	ENSPNAG00000012825	chd6	79	70.663	Pygocentrus_nattereri
ENSPTRG00000013504	CHD6	99	90.826	ENSRNOG00000016744	Chd6	100	87.688	Rattus_norvegicus
ENSPTRG00000013504	CHD6	99	100.000	ENSSBOG00000022089	CHD6	99	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000013504	CHD6	99	91.560	ENSSHAG00000017072	CHD6	100	80.601	Sarcophilus_harrisii
ENSPTRG00000013504	CHD6	94	86.990	ENSSFOG00015012920	chd6	81	73.546	Scleropages_formosus
ENSPTRG00000013504	CHD6	83	99.782	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSPTRG00000013504	CHD6	99	93.394	ENSSSCG00000007360	CHD6	100	91.764	Sus_scrofa
ENSPTRG00000013504	CHD6	99	80.220	ENSTNIG00000017487	chd6	100	57.410	Tetraodon_nigroviridis
ENSPTRG00000013504	CHD6	99	91.376	ENSTTRG00000013438	CHD6	100	88.289	Tursiops_truncatus
ENSPTRG00000013504	CHD6	99	97.985	ENSUAMG00000024036	CHD6	100	97.985	Ursus_americanus
ENSPTRG00000013504	CHD6	99	97.985	ENSUMAG00000002017	CHD6	100	97.985	Ursus_maritimus
ENSPTRG00000013504	CHD6	97	88.037	ENSVPAG00000007941	CHD6	95	89.802	Vicugna_pacos
ENSPTRG00000013504	CHD6	99	93.394	ENSVVUG00000029164	CHD6	100	91.804	Vulpes_vulpes
ENSPTRG00000013504	CHD6	99	64.037	ENSXETG00000021445	chd6	89	69.927	Xenopus_tropicalis