EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000013848 (Gene tree)
Gene ID: 474092
Gene Symbol: SCAF4
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 61809 bases
Position: chr21:18095360-18157168
Accession: 8670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000070133	RRM_1	PF00076.22	4.5e-09	1	1
ENSPTRP00000080411	RRM_1	PF00076.22	5e-09	1	1
ENSPTRP00000023838	RRM_1	PF00076.22	5.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000025827	-	4229	XM_003319040	ENSPTRP00000023838	1147 (aa)	XP_003319088	H2QKY4
ENSPTRT00000109773	-	4184	XM_003319042	ENSPTRP00000070133	1132 (aa)	XP_003319090	A0A2I3S0N5
ENSPTRT00000084131	-	3327	-	ENSPTRP00000080411	1108 (aa)	-	A0A2I3SV07

Gene Model

Click here to download ENSPTRG00000013848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000013848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000013848	SCAF4	100	100.000	ENSG00000156304	SCAF4	100	100.000	Homo_sapiens
ENSPTRG00000013848	SCAF4	52	52.203	ENSAPOG00000019615	scaf4b	59	59.641	Acanthochromis_polyacanthus
ENSPTRG00000013848	SCAF4	79	53.682	ENSAPOG00000002946	scaf4a	55	57.251	Acanthochromis_polyacanthus
ENSPTRG00000013848	SCAF4	75	93.261	ENSAMEG00000014987	SCAF4	96	94.224	Ailuropoda_melanoleuca
ENSPTRG00000013848	SCAF4	69	57.031	ENSAOCG00000000615	scaf4a	55	58.761	Amphiprion_ocellaris
ENSPTRG00000013848	SCAF4	69	57.031	ENSAPEG00000021229	scaf4a	55	58.610	Amphiprion_percula
ENSPTRG00000013848	SCAF4	99	75.413	ENSAPLG00000002509	SCAF4	59	83.308	Anas_platyrhynchos
ENSPTRG00000013848	SCAF4	96	69.161	ENSACAG00000002569	SCAF4	52	84.146	Anolis_carolinensis
ENSPTRG00000013848	SCAF4	100	98.433	ENSANAG00000037494	SCAF4	100	98.433	Aotus_nancymaae
ENSPTRG00000013848	SCAF4	93	50.000	ENSAMXG00000008585	scaf4a	60	63.102	Astyanax_mexicanus
ENSPTRG00000013848	SCAF4	100	92.515	ENSBTAG00000018855	SCAF4	100	92.254	Bos_taurus
ENSPTRG00000013848	SCAF4	100	98.348	ENSCJAG00000008993	SCAF4	100	98.348	Callithrix_jacchus
ENSPTRG00000013848	SCAF4	99	94.732	ENSCAFG00000008863	SCAF4	99	94.732	Canis_familiaris
ENSPTRG00000013848	SCAF4	99	91.262	ENSCAFG00020026019	SCAF4	100	94.187	Canis_lupus_dingo
ENSPTRG00000013848	SCAF4	100	91.934	ENSCHIG00000008385	SCAF4	100	91.847	Capra_hircus
ENSPTRG00000013848	SCAF4	91	96.141	ENSTSYG00000011344	SCAF4	99	96.141	Carlito_syrichta
ENSPTRG00000013848	SCAF4	100	89.569	ENSCPOG00000012443	SCAF4	100	89.828	Cavia_porcellus
ENSPTRG00000013848	SCAF4	100	98.518	ENSCCAG00000033727	SCAF4	100	98.518	Cebus_capucinus
ENSPTRG00000013848	SCAF4	100	98.094	ENSCATG00000030379	SCAF4	100	98.094	Cercocebus_atys
ENSPTRG00000013848	SCAF4	99	90.712	ENSCLAG00000006298	SCAF4	100	91.927	Chinchilla_lanigera
ENSPTRG00000013848	SCAF4	100	98.523	ENSCSAG00000009438	SCAF4	100	98.523	Chlorocebus_sabaeus
ENSPTRG00000013848	SCAF4	100	98.780	ENSCANG00000029847	SCAF4	100	98.780	Colobus_angolensis_palliatus
ENSPTRG00000013848	SCAF4	99	83.099	ENSCGRG00001020821	Scaf4	100	82.850	Cricetulus_griseus_chok1gshd
ENSPTRG00000013848	SCAF4	99	82.876	ENSCGRG00000014360	Scaf4	99	85.783	Cricetulus_griseus_crigri
ENSPTRG00000013848	SCAF4	58	56.849	ENSCSEG00000012808	-	61	60.500	Cynoglossus_semilaevis
ENSPTRG00000013848	SCAF4	79	52.442	ENSCSEG00000019549	scaf4a	53	54.697	Cynoglossus_semilaevis
ENSPTRG00000013848	SCAF4	72	57.317	ENSDARG00000077093	scaf4a	54	54.441	Danio_rerio
ENSPTRG00000013848	SCAF4	100	90.410	ENSDNOG00000019014	SCAF4	94	90.497	Dasypus_novemcinctus
ENSPTRG00000013848	SCAF4	92	97.436	ENSETEG00000000583	SCAF4	94	97.436	Echinops_telfairi
ENSPTRG00000013848	SCAF4	100	93.723	ENSEASG00005007756	SCAF4	100	93.897	Equus_asinus_asinus
ENSPTRG00000013848	SCAF4	100	94.071	ENSECAG00000014248	SCAF4	100	93.984	Equus_caballus
ENSPTRG00000013848	SCAF4	58	52.703	ENSELUG00000002779	SCAF8	61	68.116	Esox_lucius
ENSPTRG00000013848	SCAF4	100	94.118	ENSFCAG00000002228	SCAF4	100	94.118	Felis_catus
ENSPTRG00000013848	SCAF4	99	89.741	ENSFDAG00000017780	SCAF4	100	89.569	Fukomys_damarensis
ENSPTRG00000013848	SCAF4	100	76.537	ENSGALG00000033965	SCAF4	59	83.537	Gallus_gallus
ENSPTRG00000013848	SCAF4	70	55.270	ENSGACG00000020580	scaf4a	54	70.122	Gasterosteus_aculeatus
ENSPTRG00000013848	SCAF4	91	96.556	ENSGGOG00000015557	SCAF4	100	100.000	Gorilla_gorilla
ENSPTRG00000013848	SCAF4	100	90.870	ENSHGLG00000010582	SCAF4	100	91.559	Heterocephalus_glaber_female
ENSPTRG00000013848	SCAF4	99	90.759	ENSHGLG00100009441	SCAF4	100	91.456	Heterocephalus_glaber_male
ENSPTRG00000013848	SCAF4	69	49.770	ENSIPUG00000011285	scaf4	63	63.514	Ictalurus_punctatus
ENSPTRG00000013848	SCAF4	99	87.811	ENSSTOG00000004450	SCAF4	100	88.167	Ictidomys_tridecemlineatus
ENSPTRG00000013848	SCAF4	99	88.938	ENSJJAG00000019447	Scaf4	99	89.464	Jaculus_jaculus
ENSPTRG00000013848	SCAF4	99	59.965	ENSLACG00000013913	SCAF4	59	69.749	Latimeria_chalumnae
ENSPTRG00000013848	SCAF4	95	57.988	ENSLOCG00000009162	scaf4a	59	67.953	Lepisosteus_oculatus
ENSPTRG00000013848	SCAF4	99	92.935	ENSLAFG00000010710	SCAF4	100	92.032	Loxodonta_africana
ENSPTRG00000013848	SCAF4	100	98.268	ENSMFAG00000037668	SCAF4	100	98.268	Macaca_fascicularis
ENSPTRG00000013848	SCAF4	100	98.182	ENSMMUG00000001712	SCAF4	100	98.182	Macaca_mulatta
ENSPTRG00000013848	SCAF4	100	98.097	ENSMNEG00000032966	SCAF4	100	98.097	Macaca_nemestrina
ENSPTRG00000013848	SCAF4	99	98.338	ENSMLEG00000039674	SCAF4	100	98.338	Mandrillus_leucophaeus
ENSPTRG00000013848	SCAF4	99	76.281	ENSMGAG00000014515	SCAF4	59	83.462	Meleagris_gallopavo
ENSPTRG00000013848	SCAF4	99	88.370	ENSMAUG00000013307	Scaf4	100	88.811	Mesocricetus_auratus
ENSPTRG00000013848	SCAF4	100	96.949	ENSMICG00000005256	SCAF4	100	96.949	Microcebus_murinus
ENSPTRG00000013848	SCAF4	100	85.702	ENSMOCG00000012087	Scaf4	95	92.218	Microtus_ochrogaster
ENSPTRG00000013848	SCAF4	100	84.609	ENSMODG00000021040	SCAF4	100	83.739	Monodelphis_domestica
ENSPTRG00000013848	SCAF4	100	83.510	MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	Mus_caroli
ENSPTRG00000013848	SCAF4	100	83.470	ENSMUSG00000022983	Scaf4	95	89.909	Mus_musculus
ENSPTRG00000013848	SCAF4	100	82.792	MGP_PahariEiJ_G0016649	Scaf4	100	86.667	Mus_pahari
ENSPTRG00000013848	SCAF4	100	84.319	MGP_SPRETEiJ_G0021850	Scaf4	100	86.091	Mus_spretus
ENSPTRG00000013848	SCAF4	100	92.641	ENSMPUG00000001078	SCAF4	100	92.554	Mustela_putorius_furo
ENSPTRG00000013848	SCAF4	99	77.639	ENSMLUG00000011472	SCAF4	79	83.424	Myotis_lucifugus
ENSPTRG00000013848	SCAF4	99	91.579	ENSNGAG00000005214	Scaf4	99	91.339	Nannospalax_galili
ENSPTRG00000013848	SCAF4	100	99.303	ENSNLEG00000003569	SCAF4	100	99.303	Nomascus_leucogenys
ENSPTRG00000013848	SCAF4	84	90.217	ENSOPRG00000007016	SCAF4	77	90.217	Ochotona_princeps
ENSPTRG00000013848	SCAF4	100	89.316	ENSODEG00000002718	SCAF4	100	89.060	Octodon_degus
ENSPTRG00000013848	SCAF4	71	59.690	ENSONIG00000004687	scaf4a	51	73.780	Oreochromis_niloticus
ENSPTRG00000013848	SCAF4	100	89.014	ENSOCUG00000008336	SCAF4	100	89.100	Oryctolagus_cuniculus
ENSPTRG00000013848	SCAF4	52	57.480	ENSORLG00000003420	scaf4b	66	58.650	Oryzias_latipes
ENSPTRG00000013848	SCAF4	99	95.839	ENSOGAG00000014653	SCAF4	94	95.586	Otolemur_garnettii
ENSPTRG00000013848	SCAF4	99	91.339	ENSOARG00000013894	SCAF4	99	90.964	Ovis_aries
ENSPTRG00000013848	SCAF4	100	100.000	ENSPPAG00000028535	SCAF4	100	100.000	Pan_paniscus
ENSPTRG00000013848	SCAF4	99	94.143	ENSPPRG00000000635	SCAF4	100	94.143	Panthera_pardus
ENSPTRG00000013848	SCAF4	99	91.029	ENSPTIG00000021578	SCAF4	99	88.869	Panthera_tigris_altaica
ENSPTRG00000013848	SCAF4	100	98.268	ENSPANG00000017332	SCAF4	100	98.268	Papio_anubis
ENSPTRG00000013848	SCAF4	64	64.512	ENSPKIG00000022408	scaf4a	90	66.966	Paramormyrops_kingsleyae
ENSPTRG00000013848	SCAF4	99	77.145	ENSPSIG00000014242	SCAF4	57	84.520	Pelodiscus_sinensis
ENSPTRG00000013848	SCAF4	61	87.231	ENSPCIG00000028183	SCAF4	91	81.794	Phascolarctos_cinereus
ENSPTRG00000013848	SCAF4	100	99.477	ENSPPYG00000011355	SCAF4	100	99.477	Pongo_abelii
ENSPTRG00000013848	SCAF4	100	95.917	ENSPCOG00000018710	SCAF4	100	96.177	Propithecus_coquereli
ENSPTRG00000013848	SCAF4	100	92.677	ENSPVAG00000005220	SCAF4	100	92.851	Pteropus_vampyrus
ENSPTRG00000013848	SCAF4	76	57.705	ENSPNAG00000016892	scaf4a	60	63.922	Pygocentrus_nattereri
ENSPTRG00000013848	SCAF4	98	86.933	ENSRNOG00000002104	Scaf4	95	86.923	Rattus_norvegicus
ENSPTRG00000013848	SCAF4	99	96.053	ENSRBIG00000040007	SCAF4	99	96.759	Rhinopithecus_bieti
ENSPTRG00000013848	SCAF4	100	98.867	ENSRROG00000029488	SCAF4	100	98.867	Rhinopithecus_roxellana
ENSPTRG00000013848	SCAF4	100	84.059	ENSSHAG00000001581	SCAF4	100	82.927	Sarcophilus_harrisii
ENSPTRG00000013848	SCAF4	89	47.707	ENSSFOG00015006338	scaf4a	54	59.847	Scleropages_formosus
ENSPTRG00000013848	SCAF4	65	58.423	ENSSMAG00000003738	scaf4b	54	71.519	Scophthalmus_maximus
ENSPTRG00000013848	SCAF4	57	61.290	ENSSDUG00000012380	scaf4b	54	70.886	Seriola_dumerili
ENSPTRG00000013848	SCAF4	57	61.290	ENSSLDG00000023152	-	54	70.886	Seriola_lalandi_dorsalis
ENSPTRG00000013848	SCAF4	100	89.004	ENSSARG00000009994	SCAF4	100	89.177	Sorex_araneus
ENSPTRG00000013848	SCAF4	100	90.595	ENSSSCG00000021023	SCAF4	100	90.854	Sus_scrofa
ENSPTRG00000013848	SCAF4	74	72.570	ENSTGUG00000013464	SCAF4	57	86.047	Taeniopygia_guttata
ENSPTRG00000013848	SCAF4	51	58.451	ENSTRUG00000009536	-	65	57.818	Takifugu_rubripes
ENSPTRG00000013848	SCAF4	99	92.524	ENSTTRG00000010963	SCAF4	100	92.172	Tursiops_truncatus
ENSPTRG00000013848	SCAF4	100	92.689	ENSUAMG00000008860	SCAF4	100	92.689	Ursus_americanus
ENSPTRG00000013848	SCAF4	99	92.343	ENSUMAG00000016962	SCAF4	100	91.792	Ursus_maritimus
ENSPTRG00000013848	SCAF4	99	94.797	ENSVVUG00000002953	SCAF4	100	94.797	Vulpes_vulpes
ENSPTRG00000013848	SCAF4	99	55.796	ENSXETG00000007351	scaf4	63	66.619	Xenopus_tropicalis