EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000014240 (Gene tree)
Gene ID: 458750
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 22758 bases
Position: chr22:16919882-16942639
Accession: 6011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000049734	PRP21_like_P	PF12230.8	2.5e-51	1	1
ENSPTRP00000049734	Surp	PF01805.20	1.1e-45	1	2
ENSPTRP00000049734	Surp	PF01805.20	1.1e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000056923	-	2933	XM_016938735	ENSPTRP00000049734	793 (aa)	XP_016794224	H2R708

Gene Model

Click here to download ENSPTRG00000014240's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000014240's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000014240	SF3A1	100	100.000	ENSG00000099995	SF3A1	100	100.000	Homo_sapiens
ENSPTRG00000014240	SF3A1	100	83.145	ENSAPOG00000020465	sf3a1	99	85.032	Acanthochromis_polyacanthus
ENSPTRG00000014240	SF3A1	100	98.365	ENSAMEG00000007737	SF3A1	100	98.365	Ailuropoda_melanoleuca
ENSPTRG00000014240	SF3A1	100	84.528	ENSACIG00000020672	sf3a1	98	85.938	Amphilophus_citrinellus
ENSPTRG00000014240	SF3A1	100	82.875	ENSAOCG00000003060	sf3a1	99	85.290	Amphiprion_ocellaris
ENSPTRG00000014240	SF3A1	100	83.000	ENSAPEG00000010735	sf3a1	99	85.419	Amphiprion_percula
ENSPTRG00000014240	SF3A1	97	85.956	ENSATEG00000021201	sf3a1	97	85.142	Anabas_testudineus
ENSPTRG00000014240	SF3A1	95	94.055	ENSAPLG00000009057	SF3A1	99	93.677	Anas_platyrhynchos
ENSPTRG00000014240	SF3A1	100	85.591	ENSACAG00000009415	SF3A1	100	87.192	Anolis_carolinensis
ENSPTRG00000014240	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSPTRG00000014240	SF3A1	100	84.383	ENSACLG00000012622	sf3a1	98	86.571	Astatotilapia_calliptera
ENSPTRG00000014240	SF3A1	99	83.439	ENSAMXG00000005382	sf3a1	99	84.833	Astyanax_mexicanus
ENSPTRG00000014240	SF3A1	100	98.865	ENSBTAG00000003390	SF3A1	100	98.865	Bos_taurus
ENSPTRG00000014240	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.682	Caenorhabditis_elegans
ENSPTRG00000014240	SF3A1	100	99.243	ENSCJAG00000010370	SF3A1	100	99.243	Callithrix_jacchus
ENSPTRG00000014240	SF3A1	100	98.613	ENSCAFG00000012559	SF3A1	100	98.613	Canis_familiaris
ENSPTRG00000014240	SF3A1	100	98.613	ENSCAFG00020000838	SF3A1	100	98.613	Canis_lupus_dingo
ENSPTRG00000014240	SF3A1	100	98.739	ENSCHIG00000018642	SF3A1	100	98.739	Capra_hircus
ENSPTRG00000014240	SF3A1	100	98.991	ENSTSYG00000004739	SF3A1	100	98.991	Carlito_syrichta
ENSPTRG00000014240	SF3A1	94	81.041	ENSCAPG00000015414	SF3A1	98	81.041	Cavia_aperea
ENSPTRG00000014240	SF3A1	100	98.613	ENSCPOG00000014589	SF3A1	100	98.613	Cavia_porcellus
ENSPTRG00000014240	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSPTRG00000014240	SF3A1	100	99.622	ENSCATG00000029241	SF3A1	100	99.622	Cercocebus_atys
ENSPTRG00000014240	SF3A1	100	98.739	ENSCLAG00000006508	SF3A1	100	98.739	Chinchilla_lanigera
ENSPTRG00000014240	SF3A1	100	99.748	ENSCSAG00000009470	SF3A1	100	99.748	Chlorocebus_sabaeus
ENSPTRG00000014240	SF3A1	61	100.000	ENSCHOG00000005201	SF3A1	69	100.000	Choloepus_hoffmanni
ENSPTRG00000014240	SF3A1	100	91.058	ENSCPBG00000007595	SF3A1	100	91.562	Chrysemys_picta_bellii
ENSPTRG00000014240	SF3A1	94	52.513	ENSCING00000008526	-	66	58.238	Ciona_intestinalis
ENSPTRG00000014240	SF3A1	96	51.871	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSPTRG00000014240	SF3A1	100	99.748	ENSCANG00000033564	SF3A1	100	99.748	Colobus_angolensis_palliatus
ENSPTRG00000014240	SF3A1	100	98.235	ENSCGRG00001008933	Sf3a1	100	98.235	Cricetulus_griseus_chok1gshd
ENSPTRG00000014240	SF3A1	100	98.235	ENSCGRG00000006127	Sf3a1	100	98.235	Cricetulus_griseus_crigri
ENSPTRG00000014240	SF3A1	100	81.784	ENSCSEG00000010792	sf3a1	98	83.615	Cynoglossus_semilaevis
ENSPTRG00000014240	SF3A1	100	83.145	ENSCVAG00000004560	sf3a1	98	84.375	Cyprinodon_variegatus
ENSPTRG00000014240	SF3A1	100	82.538	ENSDARG00000041887	sf3a1	97	85.137	Danio_rerio
ENSPTRG00000014240	SF3A1	100	98.742	ENSDNOG00000010629	SF3A1	100	98.742	Dasypus_novemcinctus
ENSPTRG00000014240	SF3A1	100	98.991	ENSDORG00000005613	Sf3a1	100	98.991	Dipodomys_ordii
ENSPTRG00000014240	SF3A1	79	61.654	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSPTRG00000014240	SF3A1	84	97.006	ENSETEG00000017194	SF3A1	100	95.157	Echinops_telfairi
ENSPTRG00000014240	SF3A1	100	64.941	ENSEBUG00000001285	sf3a1	96	67.160	Eptatretus_burgeri
ENSPTRG00000014240	SF3A1	100	98.991	ENSEASG00005010254	SF3A1	100	98.991	Equus_asinus_asinus
ENSPTRG00000014240	SF3A1	100	98.991	ENSECAG00000023962	SF3A1	100	98.991	Equus_caballus
ENSPTRG00000014240	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSPTRG00000014240	SF3A1	100	82.331	ENSELUG00000022578	sf3a1	97	83.464	Esox_lucius
ENSPTRG00000014240	SF3A1	100	98.613	ENSFCAG00000011932	SF3A1	100	98.613	Felis_catus
ENSPTRG00000014240	SF3A1	95	93.122	ENSFALG00000006944	SF3A1	100	92.317	Ficedula_albicollis
ENSPTRG00000014240	SF3A1	100	98.865	ENSFDAG00000009560	SF3A1	100	98.865	Fukomys_damarensis
ENSPTRG00000014240	SF3A1	100	84.277	ENSFHEG00000010866	sf3a1	98	85.547	Fundulus_heteroclitus
ENSPTRG00000014240	SF3A1	100	81.234	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSPTRG00000014240	SF3A1	95	94.048	ENSGALG00000007937	SF3A1	100	92.821	Gallus_gallus
ENSPTRG00000014240	SF3A1	100	83.270	ENSGAFG00000009111	sf3a1	97	84.967	Gambusia_affinis
ENSPTRG00000014240	SF3A1	100	82.620	ENSGACG00000011893	sf3a1	97	84.162	Gasterosteus_aculeatus
ENSPTRG00000014240	SF3A1	96	90.933	ENSGAGG00000000762	SF3A1	99	91.459	Gopherus_agassizii
ENSPTRG00000014240	SF3A1	100	100.000	ENSGGOG00000012631	SF3A1	100	100.000	Gorilla_gorilla
ENSPTRG00000014240	SF3A1	100	84.383	ENSHBUG00000015795	sf3a1	98	86.571	Haplochromis_burtoni
ENSPTRG00000014240	SF3A1	100	98.865	ENSHGLG00000007907	SF3A1	100	98.865	Heterocephalus_glaber_female
ENSPTRG00000014240	SF3A1	100	98.865	ENSHGLG00100013799	SF3A1	100	98.865	Heterocephalus_glaber_male
ENSPTRG00000014240	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	81.419	Hippocampus_comes
ENSPTRG00000014240	SF3A1	96	82.682	ENSIPUG00000002470	sf3a1	98	83.464	Ictalurus_punctatus
ENSPTRG00000014240	SF3A1	100	98.865	ENSSTOG00000013892	SF3A1	100	98.865	Ictidomys_tridecemlineatus
ENSPTRG00000014240	SF3A1	100	98.741	ENSJJAG00000022566	Sf3a1	100	98.741	Jaculus_jaculus
ENSPTRG00000014240	SF3A1	100	82.893	ENSKMAG00000002400	sf3a1	98	84.896	Kryptolebias_marmoratus
ENSPTRG00000014240	SF3A1	100	82.642	ENSLBEG00000022974	sf3a1	99	83.871	Labrus_bergylta
ENSPTRG00000014240	SF3A1	100	86.517	ENSLACG00000003565	SF3A1	97	88.672	Latimeria_chalumnae
ENSPTRG00000014240	SF3A1	100	85.088	ENSLOCG00000008251	sf3a1	97	87.273	Lepisosteus_oculatus
ENSPTRG00000014240	SF3A1	99	61.750	ENSLAFG00000026032	-	97	62.468	Loxodonta_africana
ENSPTRG00000014240	SF3A1	100	98.865	ENSLAFG00000000448	SF3A1	100	98.865	Loxodonta_africana
ENSPTRG00000014240	SF3A1	100	99.622	ENSMFAG00000031979	SF3A1	100	99.622	Macaca_fascicularis
ENSPTRG00000014240	SF3A1	100	99.622	ENSMMUG00000005547	SF3A1	100	99.622	Macaca_mulatta
ENSPTRG00000014240	SF3A1	100	99.496	ENSMNEG00000037229	SF3A1	100	99.496	Macaca_nemestrina
ENSPTRG00000014240	SF3A1	100	99.748	ENSMLEG00000041908	SF3A1	100	99.748	Mandrillus_leucophaeus
ENSPTRG00000014240	SF3A1	97	85.640	ENSMAMG00000006460	sf3a1	97	85.770	Mastacembelus_armatus
ENSPTRG00000014240	SF3A1	100	84.383	ENSMZEG00005009633	sf3a1	98	86.571	Maylandia_zebra
ENSPTRG00000014240	SF3A1	95	94.048	ENSMGAG00000001330	SF3A1	99	93.669	Meleagris_gallopavo
ENSPTRG00000014240	SF3A1	92	94.945	ENSMAUG00000020317	Sf3a1	94	94.945	Mesocricetus_auratus
ENSPTRG00000014240	SF3A1	100	99.117	ENSMICG00000010038	SF3A1	100	99.117	Microcebus_murinus
ENSPTRG00000014240	SF3A1	100	98.361	ENSMOCG00000008438	Sf3a1	100	98.361	Microtus_ochrogaster
ENSPTRG00000014240	SF3A1	100	81.761	ENSMMOG00000015588	sf3a1	98	83.766	Mola_mola
ENSPTRG00000014240	SF3A1	100	97.478	ENSMODG00000009270	SF3A1	100	97.478	Monodelphis_domestica
ENSPTRG00000014240	SF3A1	100	84.509	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSPTRG00000014240	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSPTRG00000014240	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSPTRG00000014240	SF3A1	100	97.856	MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	Mus_pahari
ENSPTRG00000014240	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSPTRG00000014240	SF3A1	100	98.613	ENSMPUG00000013144	SF3A1	100	98.613	Mustela_putorius_furo
ENSPTRG00000014240	SF3A1	100	98.739	ENSMLUG00000002139	SF3A1	100	98.739	Myotis_lucifugus
ENSPTRG00000014240	SF3A1	100	98.865	ENSNGAG00000016977	Sf3a1	100	98.865	Nannospalax_galili
ENSPTRG00000014240	SF3A1	100	84.635	ENSNBRG00000016642	sf3a1	96	87.220	Neolamprologus_brichardi
ENSPTRG00000014240	SF3A1	100	99.748	ENSNLEG00000003686	SF3A1	100	99.748	Nomascus_leucogenys
ENSPTRG00000014240	SF3A1	96	87.632	ENSMEUG00000008741	SF3A1	100	87.632	Notamacropus_eugenii
ENSPTRG00000014240	SF3A1	100	98.108	ENSOPRG00000016636	SF3A1	100	98.108	Ochotona_princeps
ENSPTRG00000014240	SF3A1	100	98.865	ENSODEG00000002571	SF3A1	100	98.865	Octodon_degus
ENSPTRG00000014240	SF3A1	100	84.230	ENSONIG00000010848	sf3a1	98	85.938	Oreochromis_niloticus
ENSPTRG00000014240	SF3A1	100	98.487	ENSOCUG00000007633	SF3A1	100	98.487	Oryctolagus_cuniculus
ENSPTRG00000014240	SF3A1	96	82.021	ENSORLG00000013050	sf3a1	98	84.232	Oryzias_latipes
ENSPTRG00000014240	SF3A1	96	82.808	ENSORLG00020003236	sf3a1	94	84.367	Oryzias_latipes_hni
ENSPTRG00000014240	SF3A1	100	82.264	ENSORLG00015017411	sf3a1	99	84.258	Oryzias_latipes_hsok
ENSPTRG00000014240	SF3A1	100	82.767	ENSOMEG00000013362	sf3a1	99	84.000	Oryzias_melastigma
ENSPTRG00000014240	SF3A1	100	99.117	ENSOGAG00000012931	SF3A1	100	99.117	Otolemur_garnettii
ENSPTRG00000014240	SF3A1	100	96.974	ENSOARG00000006849	SF3A1	100	96.974	Ovis_aries
ENSPTRG00000014240	SF3A1	100	98.991	ENSPPAG00000041790	SF3A1	100	98.991	Pan_paniscus
ENSPTRG00000014240	SF3A1	100	98.613	ENSPPRG00000004391	SF3A1	100	98.613	Panthera_pardus
ENSPTRG00000014240	SF3A1	97	98.705	ENSPTIG00000000844	SF3A1	100	98.705	Panthera_tigris_altaica
ENSPTRG00000014240	SF3A1	100	99.748	ENSPANG00000020772	SF3A1	100	99.748	Papio_anubis
ENSPTRG00000014240	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSPTRG00000014240	SF3A1	96	84.424	ENSPMGG00000023096	sf3a1	100	84.555	Periophthalmus_magnuspinnatus
ENSPTRG00000014240	SF3A1	100	98.487	ENSPEMG00000009494	Sf3a1	100	98.487	Peromyscus_maniculatus_bairdii
ENSPTRG00000014240	SF3A1	69	78.040	ENSPMAG00000007139	-	90	77.757	Petromyzon_marinus
ENSPTRG00000014240	SF3A1	100	97.226	ENSPCIG00000022692	SF3A1	100	97.226	Phascolarctos_cinereus
ENSPTRG00000014240	SF3A1	100	75.377	ENSPFOG00000016768	sf3a1	93	79.048	Poecilia_formosa
ENSPTRG00000014240	SF3A1	100	83.648	ENSPLAG00000017268	sf3a1	97	85.229	Poecilia_latipinna
ENSPTRG00000014240	SF3A1	84	86.145	ENSPMEG00000019811	sf3a1	98	85.392	Poecilia_mexicana
ENSPTRG00000014240	SF3A1	100	83.774	ENSPREG00000010347	sf3a1	97	85.621	Poecilia_reticulata
ENSPTRG00000014240	SF3A1	100	99.748	ENSPPYG00000011707	SF3A1	100	99.748	Pongo_abelii
ENSPTRG00000014240	SF3A1	57	99.528	ENSPCAG00000003266	SF3A1	57	99.528	Procavia_capensis
ENSPTRG00000014240	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSPTRG00000014240	SF3A1	100	94.451	ENSPVAG00000017719	SF3A1	94	97.987	Pteropus_vampyrus
ENSPTRG00000014240	SF3A1	100	84.383	ENSPNYG00000018706	sf3a1	98	86.571	Pundamilia_nyererei
ENSPTRG00000014240	SF3A1	96	85.436	ENSPNAG00000003721	sf3a1	98	85.826	Pygocentrus_nattereri
ENSPTRG00000014240	SF3A1	100	98.108	ENSRNOG00000005218	Sf3a1	100	98.108	Rattus_norvegicus
ENSPTRG00000014240	SF3A1	100	99.622	ENSRBIG00000032167	SF3A1	100	99.622	Rhinopithecus_bieti
ENSPTRG00000014240	SF3A1	100	99.622	ENSRROG00000044908	SF3A1	100	99.622	Rhinopithecus_roxellana
ENSPTRG00000014240	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.261	Saimiri_boliviensis_boliviensis
ENSPTRG00000014240	SF3A1	98	94.110	ENSSHAG00000003666	SF3A1	98	94.955	Sarcophilus_harrisii
ENSPTRG00000014240	SF3A1	100	83.250	ENSSFOG00015004579	sf3a1	99	85.385	Scleropages_formosus
ENSPTRG00000014240	SF3A1	100	81.761	ENSSMAG00000004275	sf3a1	97	83.268	Scophthalmus_maximus
ENSPTRG00000014240	SF3A1	100	83.625	ENSSDUG00000022219	sf3a1	99	85.419	Seriola_dumerili
ENSPTRG00000014240	SF3A1	100	83.625	ENSSLDG00000012642	sf3a1	99	85.419	Seriola_lalandi_dorsalis
ENSPTRG00000014240	SF3A1	97	95.466	ENSSARG00000005960	SF3A1	100	95.466	Sorex_araneus
ENSPTRG00000014240	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	92.040	Sphenodon_punctatus
ENSPTRG00000014240	SF3A1	100	84.403	ENSSPAG00000011856	sf3a1	99	85.419	Stegastes_partitus
ENSPTRG00000014240	SF3A1	100	98.739	ENSSSCG00000010002	SF3A1	100	98.739	Sus_scrofa
ENSPTRG00000014240	SF3A1	95	94.063	ENSTGUG00000010547	SF3A1	99	93.904	Taeniopygia_guttata
ENSPTRG00000014240	SF3A1	100	81.761	ENSTRUG00000006118	sf3a1	97	83.137	Takifugu_rubripes
ENSPTRG00000014240	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSPTRG00000014240	SF3A1	100	91.551	ENSTBEG00000012771	SF3A1	100	91.551	Tupaia_belangeri
ENSPTRG00000014240	SF3A1	100	98.489	ENSTTRG00000001535	SF3A1	100	98.489	Tursiops_truncatus
ENSPTRG00000014240	SF3A1	99	97.840	ENSUAMG00000006750	SF3A1	99	97.840	Ursus_americanus
ENSPTRG00000014240	SF3A1	99	98.087	ENSUMAG00000016665	SF3A1	99	98.087	Ursus_maritimus
ENSPTRG00000014240	SF3A1	100	98.613	ENSVVUG00000003075	SF3A1	100	98.613	Vulpes_vulpes
ENSPTRG00000014240	SF3A1	100	85.822	ENSXETG00000016144	sf3a1	100	85.822	Xenopus_tropicalis
ENSPTRG00000014240	SF3A1	100	83.019	ENSXCOG00000015653	sf3a1	97	84.706	Xiphophorus_couchianus
ENSPTRG00000014240	SF3A1	100	83.145	ENSXMAG00000002753	sf3a1	97	84.837	Xiphophorus_maculatus