EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000014384 (Gene tree)
Gene ID: 100611714
Gene Symbol: APOBEC3B
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 63487 bases
Position: chr22:25523185-25586671
Accession: 12807
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000024782	APOBEC_N	PF08210.11	2.8e-106	1	2
ENSPTRP00000024782	APOBEC_N	PF08210.11	2.8e-106	2	2
ENSPTRP00000082459	APOBEC_N	PF08210.11	4.9e-81	1	2
ENSPTRP00000082459	APOBEC_N	PF08210.11	4.9e-81	2	2
ENSPTRP00000024776	APOBEC_N	PF08210.11	1.7e-80	1	2
ENSPTRP00000024776	APOBEC_N	PF08210.11	1.7e-80	2	2
ENSPTRP00000024779	APOBEC_N	PF08210.11	1.5e-58	1	1
ENSPTRP00000024771	APOBEC_N	PF08210.11	5.2e-42	1	1
ENSPTRP00000076561	APOBEC_N	PF08210.11	5.2e-42	1	1
ENSPTRP00000024782	APOBEC_C	PF05240.14	3e-65	1	2
ENSPTRP00000024782	APOBEC_C	PF05240.14	3e-65	2	2
ENSPTRP00000082459	APOBEC_C	PF05240.14	1e-62	1	2
ENSPTRP00000082459	APOBEC_C	PF05240.14	1e-62	2	2
ENSPTRP00000024776	APOBEC_C	PF05240.14	2.3e-62	1	2
ENSPTRP00000024776	APOBEC_C	PF05240.14	2.3e-62	2	2
ENSPTRP00000024779	APOBEC_C	PF05240.14	1.9e-32	1	1
ENSPTRP00000024771	APOBEC_C	PF05240.14	1.6e-30	1	1
ENSPTRP00000076561	APOBEC_C	PF05240.14	1.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000088480	-	1149	-	ENSPTRP00000082459	382 (aa)	-	A0A2I3SZP2
ENSPTRT00000086743	-	597	XM_016939190	ENSPTRP00000076561	198 (aa)	XP_016794679	H2QLP4
ENSPTRT00000026872	-	597	-	ENSPTRP00000024771	198 (aa)	-	H2QLP4
ENSPTRT00000026877	-	1473	-	ENSPTRP00000024776	490 (aa)	-	H2QLP5
ENSPTRT00000026880	-	1045	-	ENSPTRP00000024779	190 (aa)	-	H2QLP6
ENSPTRT00000026883	-	1185	-	ENSPTRP00000024782	394 (aa)	-	H2QLP8

Gene Model

Click here to download ENSPTRG00000014384's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr05170	Human immunodeficiency virus 1 infection	KEGG
ptr05170	Human immunodeficiency virus 1 infection	KEGG
ptr05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000014384's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000014384	APOBEC3B	96	65.464	ENSPTRG00000014387	APOBEC3G	98	65.464
ENSPTRG00000014384	APOBEC3B	100	78.495	ENSPTRG00000014385	APOBEC3C	100	78.495
ENSPTRG00000014384	APOBEC3B	100	78.421	ENSPTRG00000041588	APOBEC3D	100	78.421
ENSPTRG00000014384	APOBEC3B	95	43.017	ENSPTRG00000004640	AICDA	89	42.246
ENSPTRG00000014384	APOBEC3B	93	31.522	ENSPTRG00000029679	APOBEC2	85	32.161
ENSPTRG00000014384	APOBEC3B	93	33.846	ENSPTRG00000014390	APOBEC3H	100	35.052
ENSPTRG00000014384	APOBEC3B	51	38.144	ENSPTRG00000004614	APOBEC1	51	33.594

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000014384	APOBEC3B	99	95.960	ENSG00000128383	APOBEC3A	99	95.960	Homo_sapiens
ENSPTRG00000014384	APOBEC3B	100	85.918	ENSG00000179750	APOBEC3B	100	85.918	Homo_sapiens
ENSPTRG00000014384	APOBEC3B	96	56.410	ENSCJAG00000012500	-	100	65.957	Callithrix_jacchus
ENSPTRG00000014384	APOBEC3B	99	55.172	ENSTSYG00000035593	-	99	55.172	Carlito_syrichta
ENSPTRG00000014384	APOBEC3B	95	65.285	ENSCCAG00000027450	-	96	65.285	Cebus_capucinus
ENSPTRG00000014384	APOBEC3B	100	78.776	ENSCATG00000013527	-	100	78.776	Cercocebus_atys
ENSPTRG00000014384	APOBEC3B	72	76.190	ENSCSAG00000018401	-	70	76.190	Chlorocebus_sabaeus
ENSPTRG00000014384	APOBEC3B	100	80.408	ENSCSAG00000006445	-	100	80.408	Chlorocebus_sabaeus
ENSPTRG00000014384	APOBEC3B	100	81.407	ENSCANG00000030513	-	100	81.407	Colobus_angolensis_palliatus
ENSPTRG00000014384	APOBEC3B	100	81.152	ENSGGOG00000006721	APOBEC3B	98	84.974	Gorilla_gorilla
ENSPTRG00000014384	APOBEC3B	99	77.612	ENSMFAG00000008980	APOBEC3A	99	77.612	Macaca_fascicularis
ENSPTRG00000014384	APOBEC3B	99	78.109	ENSMMUG00000042504	APOBEC3A	99	78.109	Macaca_mulatta
ENSPTRG00000014384	APOBEC3B	95	81.771	ENSMMUG00000004015	-	98	81.771	Macaca_mulatta
ENSPTRG00000014384	APOBEC3B	99	73.333	ENSMNEG00000043211	-	95	73.333	Macaca_nemestrina
ENSPTRG00000014384	APOBEC3B	100	76.702	ENSMLEG00000004809	-	98	78.756	Mandrillus_leucophaeus
ENSPTRG00000014384	APOBEC3B	99	89.899	ENSNLEG00000015215	-	99	89.899	Nomascus_leucogenys
ENSPTRG00000014384	APOBEC3B	100	88.980	ENSPPAG00000009288	APOBEC3B	100	88.980	Pan_paniscus
ENSPTRG00000014384	APOBEC3B	99	78.607	ENSPANG00000006941	APOBEC3B	99	78.607	Papio_anubis
ENSPTRG00000014384	APOBEC3B	100	78.796	ENSPPYG00000011831	-	98	81.865	Pongo_abelii
ENSPTRG00000014384	APOBEC3B	77	57.051	ENSPCOG00000017606	-	98	57.051	Propithecus_coquereli
ENSPTRG00000014384	APOBEC3B	100	81.407	ENSRBIG00000042829	-	100	83.422	Rhinopithecus_bieti
ENSPTRG00000014384	APOBEC3B	100	81.407	ENSRROG00000028773	APOBEC3G	100	83.422	Rhinopithecus_roxellana