EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000014385 (Gene tree)
Gene ID: 470275
Gene Symbol: APOBEC3C
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3C
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 15278 bases
Position: chr22:25614650-25629927
Accession: 6686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000090414	APOBEC_N	PF08210.11	1.6e-105	1	2
ENSPTRP00000090414	APOBEC_N	PF08210.11	1.6e-105	2	2
ENSPTRP00000024781	APOBEC_N	PF08210.11	1.5e-59	1	1
ENSPTRP00000090414	APOBEC_C	PF05240.14	3.4e-66	1	2
ENSPTRP00000090414	APOBEC_C	PF05240.14	3.4e-66	2	2
ENSPTRP00000024781	APOBEC_C	PF05240.14	4.8e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000108531	-	4693	XM_525658	ENSPTRP00000090414	373 (aa)	XP_525658	A0A2I3TNB4
ENSPTRT00000050229	-	802	XM_003317243	ENSPTRP00000043768	101 (aa)	XP_003317291	H2R2C8
ENSPTRT00000026882	-	585	-	ENSPTRP00000024781	194 (aa)	-	H2QLP7

Gene Model

Click here to download ENSPTRG00000014385's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000014385's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000014385	APOBEC3C	100	78.495	ENSPTRG00000014384	APOBEC3B	100	78.495
ENSPTRG00000014385	APOBEC3C	100	47.532	ENSPTRG00000014387	APOBEC3G	99	47.532
ENSPTRG00000014385	APOBEC3C	94	43.678	ENSPTRG00000004640	AICDA	88	43.678
ENSPTRG00000014385	APOBEC3C	98	31.034	ENSPTRG00000029679	APOBEC2	85	32.323
ENSPTRG00000014385	APOBEC3C	100	84.536	ENSPTRG00000041588	APOBEC3D	100	84.536
ENSPTRG00000014385	APOBEC3C	88	36.025	ENSPTRG00000014390	APOBEC3H	98	34.759

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000014385	APOBEC3C	100	78.495	ENSG00000244509	APOBEC3C	100	78.495	Homo_sapiens
ENSPTRG00000014385	APOBEC3C	100	87.097	ENSG00000243811	APOBEC3D	100	87.097	Homo_sapiens
ENSPTRG00000014385	APOBEC3C	100	96.515	ENSG00000128394	APOBEC3F	100	96.515	Homo_sapiens
ENSPTRG00000014385	APOBEC3C	99	73.514	ENSANAG00000030088	-	98	73.514	Aotus_nancymaae
ENSPTRG00000014385	APOBEC3C	70	71.212	ENSCJAG00000015317	-	100	71.212	Callithrix_jacchus
ENSPTRG00000014385	APOBEC3C	99	48.128	ENSCAFG00020002615	-	99	48.128	Canis_lupus_dingo
ENSPTRG00000014385	APOBEC3C	100	52.332	ENSTSYG00000034260	-	99	52.332	Carlito_syrichta
ENSPTRG00000014385	APOBEC3C	97	50.000	ENSTSYG00000030036	-	99	50.000	Carlito_syrichta
ENSPTRG00000014385	APOBEC3C	97	55.738	ENSTSYG00000028254	-	99	55.738	Carlito_syrichta
ENSPTRG00000014385	APOBEC3C	99	66.500	ENSCCAG00000030932	-	90	66.500	Cebus_capucinus
ENSPTRG00000014385	APOBEC3C	100	74.731	ENSCATG00000043226	APOBEC3C	100	74.731	Cercocebus_atys
ENSPTRG00000014385	APOBEC3C	98	86.957	ENSCATG00000033502	-	95	86.957	Cercocebus_atys
ENSPTRG00000014385	APOBEC3C	100	73.118	ENSCSAG00000006402	APOBEC3C	100	73.118	Chlorocebus_sabaeus
ENSPTRG00000014385	APOBEC3C	98	85.340	ENSCSAG00000006382	APOBEC3F	98	85.340	Chlorocebus_sabaeus
ENSPTRG00000014385	APOBEC3C	100	89.276	ENSCANG00000032904	-	100	89.276	Colobus_angolensis_palliatus
ENSPTRG00000014385	APOBEC3C	100	83.469	ENSCANG00000031957	-	99	83.469	Colobus_angolensis_palliatus
ENSPTRG00000014385	APOBEC3C	100	76.344	ENSCANG00000039177	APOBEC3C	100	76.344	Colobus_angolensis_palliatus
ENSPTRG00000014385	APOBEC3C	100	85.523	ENSCANG00000033269	-	100	85.523	Colobus_angolensis_palliatus
ENSPTRG00000014385	APOBEC3C	94	41.398	ENSDNOG00000044642	-	98	41.398	Dasypus_novemcinctus
ENSPTRG00000014385	APOBEC3C	99	46.429	ENSEASG00005018641	-	98	46.231	Equus_asinus_asinus
ENSPTRG00000014385	APOBEC3C	100	48.913	ENSECAG00000006071	-	98	48.913	Equus_caballus
ENSPTRG00000014385	APOBEC3C	100	95.442	ENSGGOG00000038678	APOBEC3F	100	95.442	Gorilla_gorilla
ENSPTRG00000014385	APOBEC3C	100	81.183	ENSGGOG00000036587	-	100	81.183	Gorilla_gorilla
ENSPTRG00000014385	APOBEC3C	99	46.774	ENSHGLG00000017315	-	91	46.774	Heterocephalus_glaber_female
ENSPTRG00000014385	APOBEC3C	99	46.774	ENSHGLG00100003105	-	94	46.774	Heterocephalus_glaber_male
ENSPTRG00000014385	APOBEC3C	100	77.273	ENSMFAG00000002331	-	100	77.273	Macaca_fascicularis
ENSPTRG00000014385	APOBEC3C	100	87.936	ENSMFAG00000004037	APOBEC3F	100	87.936	Macaca_fascicularis
ENSPTRG00000014385	APOBEC3C	100	72.043	ENSMFAG00000016792	APOBEC3C	100	72.043	Macaca_fascicularis
ENSPTRG00000014385	APOBEC3C	100	87.263	ENSMMUG00000004017	APOBEC3F	99	87.263	Macaca_mulatta
ENSPTRG00000014385	APOBEC3C	98	72.826	ENSMMUG00000004018	APOBEC3C	100	69.588	Macaca_mulatta
ENSPTRG00000014385	APOBEC3C	100	85.926	ENSMNEG00000043316	APOBEC3D	97	85.926	Macaca_nemestrina
ENSPTRG00000014385	APOBEC3C	100	72.043	ENSMNEG00000045196	APOBEC3C	100	72.043	Macaca_nemestrina
ENSPTRG00000014385	APOBEC3C	100	75.269	ENSMLEG00000036992	APOBEC3C	100	75.269	Mandrillus_leucophaeus
ENSPTRG00000014385	APOBEC3C	100	89.008	ENSMLEG00000029642	APOBEC3F	100	89.008	Mandrillus_leucophaeus
ENSPTRG00000014385	APOBEC3C	99	56.216	ENSMICG00000042615	-	89	56.216	Microcebus_murinus
ENSPTRG00000014385	APOBEC3C	99	46.970	ENSMLUG00000023676	-	99	46.970	Myotis_lucifugus
ENSPTRG00000014385	APOBEC3C	100	75.269	ENSNLEG00000028392	APOBEC3C	100	75.269	Nomascus_leucogenys
ENSPTRG00000014385	APOBEC3C	100	73.913	ENSNLEG00000035811	-	100	73.913	Nomascus_leucogenys
ENSPTRG00000014385	APOBEC3C	98	45.055	ENSOGAG00000033404	-	99	46.995	Otolemur_garnettii
ENSPTRG00000014385	APOBEC3C	99	44.560	ENSOGAG00000030300	-	98	44.560	Otolemur_garnettii
ENSPTRG00000014385	APOBEC3C	100	48.969	ENSOGAG00000032498	-	98	48.969	Otolemur_garnettii
ENSPTRG00000014385	APOBEC3C	100	83.871	ENSPPAG00000028218	-	100	83.871	Pan_paniscus
ENSPTRG00000014385	APOBEC3C	100	78.495	ENSPPAG00000014118	APOBEC3C	100	78.495	Pan_paniscus
ENSPTRG00000014385	APOBEC3C	98	50.811	ENSPPRG00000003726	-	100	50.000	Panthera_pardus
ENSPTRG00000014385	APOBEC3C	100	87.131	ENSPANG00000010775	APOBEC3F	100	87.131	Papio_anubis
ENSPTRG00000014385	APOBEC3C	100	74.731	ENSPPYG00000011832	APOBEC3C	100	74.731	Pongo_abelii
ENSPTRG00000014385	APOBEC3C	69	58.400	ENSPCOG00000018072	-	100	58.400	Propithecus_coquereli
ENSPTRG00000014385	APOBEC3C	68	58.140	ENSPCOG00000022067	-	98	58.140	Propithecus_coquereli
ENSPTRG00000014385	APOBEC3C	90	49.593	ENSPVAG00000009461	-	71	49.593	Pteropus_vampyrus
ENSPTRG00000014385	APOBEC3C	100	88.333	ENSRBIG00000042297	-	100	88.333	Rhinopithecus_bieti
ENSPTRG00000014385	APOBEC3C	100	89.227	ENSRBIG00000030323	-	100	89.227	Rhinopithecus_bieti
ENSPTRG00000014385	APOBEC3C	100	80.928	ENSRBIG00000030834	-	100	80.928	Rhinopithecus_bieti
ENSPTRG00000014385	APOBEC3C	100	88.333	ENSRROG00000029996	-	100	88.333	Rhinopithecus_roxellana
ENSPTRG00000014385	APOBEC3C	100	81.443	ENSRROG00000028557	-	100	81.443	Rhinopithecus_roxellana
ENSPTRG00000014385	APOBEC3C	100	88.740	ENSRROG00000029045	APOBEC3C	100	88.740	Rhinopithecus_roxellana
ENSPTRG00000014385	APOBEC3C	100	70.915	ENSSBOG00000032780	-	100	70.915	Saimiri_boliviensis_boliviensis
ENSPTRG00000014385	APOBEC3C	94	46.703	ENSUAMG00000004433	-	100	46.703	Ursus_americanus
ENSPTRG00000014385	APOBEC3C	96	47.059	ENSUMAG00000014441	-	87	47.059	Ursus_maritimus
ENSPTRG00000014385	APOBEC3C	80	50.000	ENSVVUG00000014628	-	91	51.370	Vulpes_vulpes