EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000014390 (Gene tree)
Gene ID: 470214
Gene Symbol: APOBEC3H
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3H
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 6984 bases
Position: chr22:25672631-25679614
Accession: 6685
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000024788	APOBEC_N	PF08210.11	3.2e-36	1	1
ENSPTRP00000083401	APOBEC_N	PF08210.11	4.3e-36	1	1
ENSPTRP00000078638	APOBEC_N	PF08210.11	3.9e-28	1	1
ENSPTRP00000024788	APOBEC_C	PF05240.14	3e-25	1	1
ENSPTRP00000083401	APOBEC_C	PF05240.14	3.7e-25	1	1
ENSPTRP00000078638	APOBEC_C	PF05240.14	8.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000099825	-	465	-	ENSPTRP00000078638	154 (aa)	-	A0A2I3SNY2
ENSPTRT00000077088	-	603	-	ENSPTRP00000083401	200 (aa)	-	A0A2I3T2F3
ENSPTRT00000026890	-	1284	XM_009438320	ENSPTRP00000024788	183 (aa)	XP_009436595	B7T0U6

Gene Model

Click here to download ENSPTRG00000014390's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000014390's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000014390	APOBEC3H	99	32.275	ENSPTRG00000041588	APOBEC3D	84	34.356
ENSPTRG00000014390	APOBEC3H	97	35.676	ENSPTRG00000004640	AICDA	90	35.106
ENSPTRG00000014390	APOBEC3H	98	38.608	ENSPTRG00000014387	APOBEC3G	73	39.860
ENSPTRG00000014390	APOBEC3H	98	34.759	ENSPTRG00000014385	APOBEC3C	88	36.025
ENSPTRG00000014390	APOBEC3H	100	35.052	ENSPTRG00000014384	APOBEC3B	93	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000014390	APOBEC3H	100	95.455	ENSG00000100298	APOBEC3H	100	95.455	Homo_sapiens
ENSPTRG00000014390	APOBEC3H	98	47.027	ENSAMEG00000010818	-	82	47.027	Ailuropoda_melanoleuca
ENSPTRG00000014390	APOBEC3H	99	72.973	ENSANAG00000025410	APOBEC3H	83	70.811	Aotus_nancymaae
ENSPTRG00000014390	APOBEC3H	98	48.333	ENSBTAG00000007755	APOBEC3H	92	48.333	Bos_taurus
ENSPTRG00000014390	APOBEC3H	100	72.078	ENSCJAG00000012524	APOBEC3H	100	70.130	Callithrix_jacchus
ENSPTRG00000014390	APOBEC3H	99	48.901	ENSCAFG00000001361	APOBEC3Z3	93	47.802	Canis_familiaris
ENSPTRG00000014390	APOBEC3H	99	48.352	ENSCAFG00020002584	-	96	46.597	Canis_lupus_dingo
ENSPTRG00000014390	APOBEC3H	98	48.889	ENSCHIG00000026580	-	95	48.889	Capra_hircus
ENSPTRG00000014390	APOBEC3H	97	51.124	ENSTSYG00000032894	-	100	51.124	Carlito_syrichta
ENSPTRG00000014390	APOBEC3H	100	52.486	ENSCPOG00000009257	-	86	52.809	Cavia_porcellus
ENSPTRG00000014390	APOBEC3H	100	76.433	ENSCCAG00000008525	APOBEC3H	100	75.796	Cebus_capucinus
ENSPTRG00000014390	APOBEC3H	100	81.818	ENSCATG00000030302	APOBEC3H	100	81.818	Cercocebus_atys
ENSPTRG00000014390	APOBEC3H	98	52.222	ENSCLAG00000016615	-	88	52.222	Chinchilla_lanigera
ENSPTRG00000014390	APOBEC3H	100	79.781	ENSCSAG00000006371	APOBEC3H	87	79.781	Chlorocebus_sabaeus
ENSPTRG00000014390	APOBEC3H	100	50.538	ENSCGRG00001022976	Apobec3	84	50.538	Cricetulus_griseus_chok1gshd
ENSPTRG00000014390	APOBEC3H	100	50.538	ENSCGRG00000005621	Apobec3	84	50.538	Cricetulus_griseus_crigri
ENSPTRG00000014390	APOBEC3H	98	51.892	ENSDORG00000027271	-	99	42.857	Dipodomys_ordii
ENSPTRG00000014390	APOBEC3H	97	52.809	ENSECAG00000007726	APOBEC3H	75	52.809	Equus_caballus
ENSPTRG00000014390	APOBEC3H	98	50.556	ENSFCAG00000005251	APOBEC3Z3	93	50.273	Felis_catus
ENSPTRG00000014390	APOBEC3H	98	51.667	ENSSTOG00000007125	-	85	51.667	Ictidomys_tridecemlineatus
ENSPTRG00000014390	APOBEC3H	99	50.000	ENSJJAG00000016840	-	73	50.000	Jaculus_jaculus
ENSPTRG00000014390	APOBEC3H	100	50.562	ENSLAFG00000027404	-	95	50.562	Loxodonta_africana
ENSPTRG00000014390	APOBEC3H	100	83.117	ENSMFAG00000031827	APOBEC3H	100	83.117	Macaca_fascicularis
ENSPTRG00000014390	APOBEC3H	100	83.766	ENSMMUG00000001016	APOBEC3H	100	83.766	Macaca_mulatta
ENSPTRG00000014390	APOBEC3H	100	83.117	ENSMNEG00000039259	APOBEC3H	100	83.117	Macaca_nemestrina
ENSPTRG00000014390	APOBEC3H	100	83.766	ENSMLEG00000033417	APOBEC3H	100	83.766	Mandrillus_leucophaeus
ENSPTRG00000014390	APOBEC3H	100	49.198	ENSMAUG00000011683	Apobec3	72	49.189	Mesocricetus_auratus
ENSPTRG00000014390	APOBEC3H	99	50.549	ENSMOCG00000021576	Apobec3	83	50.000	Microtus_ochrogaster
ENSPTRG00000014390	APOBEC3H	100	48.649	MGP_CAROLIEiJ_G0020029	Apobec3	92	48.108	Mus_caroli
ENSPTRG00000014390	APOBEC3H	100	43.784	ENSMUSG00000009585	Apobec3	97	45.361	Mus_musculus
ENSPTRG00000014390	APOBEC3H	100	48.404	MGP_PahariEiJ_G0020031	-	86	47.340	Mus_pahari
ENSPTRG00000014390	APOBEC3H	100	47.027	MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	Mus_spretus
ENSPTRG00000014390	APOBEC3H	98	50.000	ENSMPUG00000013239	-	78	50.000	Mustela_putorius_furo
ENSPTRG00000014390	APOBEC3H	100	48.889	ENSNGAG00000018998	Apobec3	93	48.889	Nannospalax_galili
ENSPTRG00000014390	APOBEC3H	100	85.792	ENSNLEG00000015218	-	87	85.792	Nomascus_leucogenys
ENSPTRG00000014390	APOBEC3H	98	41.341	ENSOCUG00000023913	-	81	41.341	Oryctolagus_cuniculus
ENSPTRG00000014390	APOBEC3H	98	48.889	ENSOARG00000016290	APOBEC3F	96	48.889	Ovis_aries
ENSPTRG00000014390	APOBEC3H	100	100.000	ENSPPAG00000036522	APOBEC3H	100	100.000	Pan_paniscus
ENSPTRG00000014390	APOBEC3H	98	51.381	ENSPPRG00000003941	-	93	50.543	Panthera_pardus
ENSPTRG00000014390	APOBEC3H	89	34.965	ENSPPRG00000003675	-	88	34.682	Panthera_pardus
ENSPTRG00000014390	APOBEC3H	98	51.381	ENSPTIG00000010283	-	93	50.543	Panthera_tigris_altaica
ENSPTRG00000014390	APOBEC3H	99	83.978	ENSPANG00000010774	APOBEC3H	99	83.660	Papio_anubis
ENSPTRG00000014390	APOBEC3H	100	46.774	ENSPEMG00000000456	Apobec3	76	46.774	Peromyscus_maniculatus_bairdii
ENSPTRG00000014390	APOBEC3H	100	86.885	ENSPPYG00000011834	-	87	86.885	Pongo_abelii
ENSPTRG00000014390	APOBEC3H	98	41.667	ENSPCAG00000015655	-	99	41.111	Procavia_capensis
ENSPTRG00000014390	APOBEC3H	69	37.008	ENSPVAG00000024267	-	93	37.008	Pteropus_vampyrus
ENSPTRG00000014390	APOBEC3H	97	50.562	ENSPVAG00000009462	-	98	50.562	Pteropus_vampyrus
ENSPTRG00000014390	APOBEC3H	69	35.433	ENSPVAG00000024161	-	93	35.433	Pteropus_vampyrus
ENSPTRG00000014390	APOBEC3H	100	48.128	ENSRNOG00000016852	Apobec3	84	48.128	Rattus_norvegicus
ENSPTRG00000014390	APOBEC3H	100	81.500	ENSRBIG00000029088	APOBEC3H	100	81.500	Rhinopithecus_bieti
ENSPTRG00000014390	APOBEC3H	100	82.000	ENSRROG00000024699	APOBEC3H	100	82.000	Rhinopithecus_roxellana
ENSPTRG00000014390	APOBEC3H	99	71.038	ENSSBOG00000030005	APOBEC3H	100	70.922	Saimiri_boliviensis_boliviensis
ENSPTRG00000014390	APOBEC3H	98	51.111	ENSSSCG00000000091	APOBEC3B	83	50.000	Sus_scrofa
ENSPTRG00000014390	APOBEC3H	94	50.000	ENSTBEG00000001532	-	98	50.000	Tupaia_belangeri
ENSPTRG00000014390	APOBEC3H	98	50.556	ENSTTRG00000001266	-	99	50.556	Tursiops_truncatus
ENSPTRG00000014390	APOBEC3H	98	48.936	ENSUAMG00000004427	-	83	48.936	Ursus_americanus
ENSPTRG00000014390	APOBEC3H	98	51.934	ENSUMAG00000014435	-	91	51.934	Ursus_maritimus
ENSPTRG00000014390	APOBEC3H	71	52.308	ENSVPAG00000011108	-	98	52.308	Vicugna_pacos