EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000015482 (Gene tree)
Gene ID: 460744
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 144258 bases
Position: chr3:145749590-145893847
Accession: 7141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000087160	XRN_N	PF03159.18	1e-95	1	1
ENSPTRP00000026654	XRN_N	PF03159.18	1e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000089334	-	10096	XM_009446589	ENSPTRP00000087160	1693 (aa)	XP_009444864	K7BLV9
ENSPTRT00000028884	-	10141	XM_001161640	ENSPTRP00000026654	1706 (aa)	XP_001161640	H2QNI6

Gene Model

Click here to download ENSPTRG00000015482's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03008	Ribosome biogenesis in eukaryotes	KEGG
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000015482's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000015482	XRN1	100	99.233	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSPTRG00000015482	XRN1	100	61.467	ENSAPOG00000000622	xrn1	93	76.119	Acanthochromis_polyacanthus
ENSPTRG00000015482	XRN1	100	91.580	ENSAMEG00000012538	XRN1	100	91.580	Ailuropoda_melanoleuca
ENSPTRG00000015482	XRN1	95	72.335	ENSACIG00000001057	xrn1	99	72.498	Amphilophus_citrinellus
ENSPTRG00000015482	XRN1	100	61.095	ENSAOCG00000014097	xrn1	95	69.076	Amphiprion_ocellaris
ENSPTRG00000015482	XRN1	100	60.929	ENSAPEG00000006620	xrn1	98	62.902	Amphiprion_percula
ENSPTRG00000015482	XRN1	94	71.122	ENSATEG00000009752	xrn1	99	71.111	Anabas_testudineus
ENSPTRG00000015482	XRN1	99	76.365	ENSAPLG00000004905	XRN1	100	75.768	Anas_platyrhynchos
ENSPTRG00000015482	XRN1	100	72.523	ENSACAG00000004985	XRN1	100	72.241	Anolis_carolinensis
ENSPTRG00000015482	XRN1	100	96.399	ENSANAG00000029013	XRN1	100	96.399	Aotus_nancymaae
ENSPTRG00000015482	XRN1	100	60.498	ENSACLG00000004806	xrn1	99	60.611	Astatotilapia_calliptera
ENSPTRG00000015482	XRN1	99	60.935	ENSAMXG00000019370	xrn1	96	92.308	Astyanax_mexicanus
ENSPTRG00000015482	XRN1	100	92.033	ENSBTAG00000011524	XRN1	100	92.033	Bos_taurus
ENSPTRG00000015482	XRN1	71	38.749	WBGene00012730	xrn-1	80	38.995	Caenorhabditis_elegans
ENSPTRG00000015482	XRN1	100	96.340	ENSCJAG00000001872	XRN1	100	96.340	Callithrix_jacchus
ENSPTRG00000015482	XRN1	100	93.029	ENSCAFG00000007783	XRN1	100	93.029	Canis_familiaris
ENSPTRG00000015482	XRN1	100	91.912	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSPTRG00000015482	XRN1	99	90.052	ENSCHIG00000019192	XRN1	99	90.052	Capra_hircus
ENSPTRG00000015482	XRN1	100	94.041	ENSTSYG00000002705	XRN1	100	94.041	Carlito_syrichta
ENSPTRG00000015482	XRN1	56	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSPTRG00000015482	XRN1	100	96.694	ENSCCAG00000034800	XRN1	99	98.098	Cebus_capucinus
ENSPTRG00000015482	XRN1	100	97.774	ENSCATG00000041794	XRN1	100	97.774	Cercocebus_atys
ENSPTRG00000015482	XRN1	100	87.940	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSPTRG00000015482	XRN1	100	97.774	ENSCSAG00000011265	XRN1	100	97.774	Chlorocebus_sabaeus
ENSPTRG00000015482	XRN1	58	97.403	ENSCHOG00000013961	-	59	97.403	Choloepus_hoffmanni
ENSPTRG00000015482	XRN1	70	45.154	ENSCSAVG00000008584	-	98	44.917	Ciona_savignyi
ENSPTRG00000015482	XRN1	100	97.816	ENSCANG00000037495	XRN1	100	97.816	Colobus_angolensis_palliatus
ENSPTRG00000015482	XRN1	100	87.803	ENSCGRG00001019411	Xrn1	99	95.404	Cricetulus_griseus_chok1gshd
ENSPTRG00000015482	XRN1	100	87.803	ENSCGRG00000012464	Xrn1	99	95.404	Cricetulus_griseus_crigri
ENSPTRG00000015482	XRN1	100	55.971	ENSCSEG00000021285	xrn1	94	94.231	Cynoglossus_semilaevis
ENSPTRG00000015482	XRN1	67	67.368	ENSCVAG00000013089	xrn1	99	71.693	Cyprinodon_variegatus
ENSPTRG00000015482	XRN1	99	63.454	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSPTRG00000015482	XRN1	100	86.972	ENSDORG00000013833	Xrn1	100	86.972	Dipodomys_ordii
ENSPTRG00000015482	XRN1	75	39.938	FBgn0020261	pcm	76	39.846	Drosophila_melanogaster
ENSPTRG00000015482	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSPTRG00000015482	XRN1	100	93.029	ENSEASG00005002687	XRN1	99	95.404	Equus_asinus_asinus
ENSPTRG00000015482	XRN1	100	93.029	ENSECAG00000008301	XRN1	100	93.029	Equus_caballus
ENSPTRG00000015482	XRN1	92	82.600	ENSEEUG00000011323	XRN1	92	82.600	Erinaceus_europaeus
ENSPTRG00000015482	XRN1	100	61.446	ENSELUG00000000169	xrn1	100	61.538	Esox_lucius
ENSPTRG00000015482	XRN1	100	89.169	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSPTRG00000015482	XRN1	100	75.126	ENSFALG00000007021	XRN1	100	74.552	Ficedula_albicollis
ENSPTRG00000015482	XRN1	100	88.863	ENSFDAG00000020494	XRN1	99	95.246	Fukomys_damarensis
ENSPTRG00000015482	XRN1	84	68.285	ENSGMOG00000006396	xrn1	83	68.285	Gadus_morhua
ENSPTRG00000015482	XRN1	100	75.239	ENSGALG00000002706	XRN1	100	74.831	Gallus_gallus
ENSPTRG00000015482	XRN1	100	59.863	ENSGACG00000014328	xrn1	100	60.216	Gasterosteus_aculeatus
ENSPTRG00000015482	XRN1	95	78.300	ENSGAGG00000017535	XRN1	99	78.300	Gopherus_agassizii
ENSPTRG00000015482	XRN1	100	99.121	ENSGGOG00000008047	XRN1	100	99.121	Gorilla_gorilla
ENSPTRG00000015482	XRN1	100	60.824	ENSHBUG00000005908	xrn1	98	72.485	Haplochromis_burtoni
ENSPTRG00000015482	XRN1	100	89.908	ENSHGLG00000014476	XRN1	99	96.197	Heterocephalus_glaber_female
ENSPTRG00000015482	XRN1	100	89.908	ENSHGLG00100015130	XRN1	99	96.197	Heterocephalus_glaber_male
ENSPTRG00000015482	XRN1	96	70.777	ENSHCOG00000014062	xrn1	99	69.688	Hippocampus_comes
ENSPTRG00000015482	XRN1	99	62.521	ENSIPUG00000015229	xrn1	99	62.715	Ictalurus_punctatus
ENSPTRG00000015482	XRN1	100	91.397	ENSSTOG00000013552	XRN1	99	96.989	Ictidomys_tridecemlineatus
ENSPTRG00000015482	XRN1	98	86.526	ENSJJAG00000010863	Xrn1	99	93.413	Jaculus_jaculus
ENSPTRG00000015482	XRN1	94	61.487	ENSKMAG00000021356	xrn1	94	75.527	Kryptolebias_marmoratus
ENSPTRG00000015482	XRN1	100	60.410	ENSLBEG00000018656	xrn1	97	95.146	Labrus_bergylta
ENSPTRG00000015482	XRN1	100	69.818	ENSLACG00000009020	XRN1	100	69.778	Latimeria_chalumnae
ENSPTRG00000015482	XRN1	100	65.593	ENSLOCG00000007944	xrn1	100	65.593	Lepisosteus_oculatus
ENSPTRG00000015482	XRN1	63	95.884	ENSLAFG00000015426	XRN1	100	95.884	Loxodonta_africana
ENSPTRG00000015482	XRN1	100	97.774	ENSMFAG00000032599	XRN1	100	97.774	Macaca_fascicularis
ENSPTRG00000015482	XRN1	100	97.832	ENSMMUG00000014038	XRN1	100	97.832	Macaca_mulatta
ENSPTRG00000015482	XRN1	100	97.657	ENSMNEG00000034217	XRN1	100	97.657	Macaca_nemestrina
ENSPTRG00000015482	XRN1	94	70.955	ENSMAMG00000013219	xrn1	94	76.907	Mastacembelus_armatus
ENSPTRG00000015482	XRN1	100	60.147	ENSMZEG00005015099	xrn1	99	60.498	Maylandia_zebra
ENSPTRG00000015482	XRN1	99	75.116	ENSMGAG00000006333	XRN1	100	74.521	Meleagris_gallopavo
ENSPTRG00000015482	XRN1	100	94.229	ENSMICG00000048948	XRN1	96	99.029	Microcebus_murinus
ENSPTRG00000015482	XRN1	58	94.295	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSPTRG00000015482	XRN1	100	82.439	ENSMODG00000021236	XRN1	100	82.312	Monodelphis_domestica
ENSPTRG00000015482	XRN1	100	58.083	ENSMALG00000004098	xrn1	100	57.855	Monopterus_albus
ENSPTRG00000015482	XRN1	96	94.471	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSPTRG00000015482	XRN1	100	86.532	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSPTRG00000015482	XRN1	100	86.532	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSPTRG00000015482	XRN1	100	86.474	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSPTRG00000015482	XRN1	100	93.380	ENSMPUG00000012040	XRN1	100	93.380	Mustela_putorius_furo
ENSPTRG00000015482	XRN1	100	89.030	ENSMLUG00000016885	XRN1	100	89.030	Myotis_lucifugus
ENSPTRG00000015482	XRN1	58	91.143	ENSNGAG00000023964	Xrn1	99	91.143	Nannospalax_galili
ENSPTRG00000015482	XRN1	100	98.288	ENSNLEG00000004726	XRN1	100	98.288	Nomascus_leucogenys
ENSPTRG00000015482	XRN1	80	97.938	ENSMEUG00000014473	-	80	98.058	Notamacropus_eugenii
ENSPTRG00000015482	XRN1	79	84.160	ENSOPRG00000007337	-	78	84.160	Ochotona_princeps
ENSPTRG00000015482	XRN1	100	61.477	ENSONIG00000016673	xrn1	99	64.774	Oreochromis_niloticus
ENSPTRG00000015482	XRN1	92	77.890	ENSOANG00000006735	XRN1	100	77.701	Ornithorhynchus_anatinus
ENSPTRG00000015482	XRN1	100	90.315	ENSOCUG00000001861	XRN1	100	90.315	Oryctolagus_cuniculus
ENSPTRG00000015482	XRN1	100	61.042	ENSORLG00000013005	xrn1	100	60.743	Oryzias_latipes
ENSPTRG00000015482	XRN1	100	61.399	ENSORLG00020005559	xrn1	100	61.477	Oryzias_latipes_hni
ENSPTRG00000015482	XRN1	100	61.035	ENSORLG00015022523	xrn1	100	60.894	Oryzias_latipes_hsok
ENSPTRG00000015482	XRN1	92	72.779	ENSOMEG00000015397	xrn1	99	72.698	Oryzias_melastigma
ENSPTRG00000015482	XRN1	100	90.808	ENSOGAG00000000170	XRN1	100	90.984	Otolemur_garnettii
ENSPTRG00000015482	XRN1	99	92.434	ENSOARG00000006343	XRN1	99	92.434	Ovis_aries
ENSPTRG00000015482	XRN1	100	99.883	ENSPPAG00000010180	XRN1	100	99.883	Pan_paniscus
ENSPTRG00000015482	XRN1	100	93.510	ENSPPRG00000007125	XRN1	100	93.510	Panthera_pardus
ENSPTRG00000015482	XRN1	100	93.569	ENSPTIG00000021081	XRN1	100	93.569	Panthera_tigris_altaica
ENSPTRG00000015482	XRN1	100	97.715	ENSPANG00000010638	XRN1	100	97.715	Papio_anubis
ENSPTRG00000015482	XRN1	100	76.813	ENSPSIG00000018050	XRN1	100	76.743	Pelodiscus_sinensis
ENSPTRG00000015482	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSPTRG00000015482	XRN1	58	95.087	ENSPEMG00000020610	Xrn1	99	95.087	Peromyscus_maniculatus_bairdii
ENSPTRG00000015482	XRN1	65	50.549	ENSPMAG00000002975	xrn1	91	77.874	Petromyzon_marinus
ENSPTRG00000015482	XRN1	100	81.866	ENSPCIG00000028735	XRN1	99	89.841	Phascolarctos_cinereus
ENSPTRG00000015482	XRN1	91	64.603	ENSPFOG00000013932	xrn1	99	64.801	Poecilia_formosa
ENSPTRG00000015482	XRN1	91	63.318	ENSPLAG00000021653	xrn1	99	64.140	Poecilia_latipinna
ENSPTRG00000015482	XRN1	89	64.221	ENSPMEG00000003076	xrn1	95	64.671	Poecilia_mexicana
ENSPTRG00000015482	XRN1	100	60.579	ENSPREG00000021147	xrn1	100	61.254	Poecilia_reticulata
ENSPTRG00000015482	XRN1	100	98.360	ENSPPYG00000014172	XRN1	100	98.360	Pongo_abelii
ENSPTRG00000015482	XRN1	91	81.801	ENSPCAG00000005638	XRN1	100	81.801	Procavia_capensis
ENSPTRG00000015482	XRN1	100	94.572	ENSPCOG00000013089	XRN1	99	96.999	Propithecus_coquereli
ENSPTRG00000015482	XRN1	96	92.114	ENSPVAG00000016265	XRN1	96	92.114	Pteropus_vampyrus
ENSPTRG00000015482	XRN1	100	60.585	ENSPNYG00000010570	xrn1	99	60.970	Pundamilia_nyererei
ENSPTRG00000015482	XRN1	99	60.865	ENSPNAG00000023531	xrn1	99	60.865	Pygocentrus_nattereri
ENSPTRG00000015482	XRN1	100	87.052	ENSRNOG00000042951	Xrn1	100	87.052	Rattus_norvegicus
ENSPTRG00000015482	XRN1	100	97.305	ENSRBIG00000041227	XRN1	100	97.305	Rhinopithecus_bieti
ENSPTRG00000015482	XRN1	67	54.223	YGL173C	XRN1	81	34.513	Saccharomyces_cerevisiae
ENSPTRG00000015482	XRN1	100	96.163	ENSSBOG00000029561	XRN1	100	96.163	Saimiri_boliviensis_boliviensis
ENSPTRG00000015482	XRN1	99	81.856	ENSSHAG00000016207	XRN1	100	81.646	Sarcophilus_harrisii
ENSPTRG00000015482	XRN1	100	60.910	ENSSFOG00015024211	xrn1	100	61.233	Scleropages_formosus
ENSPTRG00000015482	XRN1	94	72.375	ENSSMAG00000016534	xrn1	98	72.375	Scophthalmus_maximus
ENSPTRG00000015482	XRN1	90	72.254	ENSSDUG00000010306	xrn1	97	72.101	Seriola_dumerili
ENSPTRG00000015482	XRN1	96	70.661	ENSSLDG00000021543	xrn1	100	70.520	Seriola_lalandi_dorsalis
ENSPTRG00000015482	XRN1	68	85.021	ENSSARG00000007741	-	83	85.021	Sorex_araneus
ENSPTRG00000015482	XRN1	100	77.365	ENSTGUG00000008498	XRN1	100	76.825	Taeniopygia_guttata
ENSPTRG00000015482	XRN1	100	59.030	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSPTRG00000015482	XRN1	96	68.526	ENSTNIG00000017615	xrn1	100	58.874	Tetraodon_nigroviridis
ENSPTRG00000015482	XRN1	84	97.035	ENSTBEG00000003256	XRN1	89	86.762	Tupaia_belangeri
ENSPTRG00000015482	XRN1	100	88.869	ENSTTRG00000012914	XRN1	100	88.869	Tursiops_truncatus
ENSPTRG00000015482	XRN1	100	92.506	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSPTRG00000015482	XRN1	100	94.438	ENSUMAG00000013625	XRN1	100	94.438	Ursus_maritimus
ENSPTRG00000015482	XRN1	100	90.275	ENSVPAG00000004690	XRN1	100	90.275	Vicugna_pacos
ENSPTRG00000015482	XRN1	100	93.966	ENSVVUG00000024461	XRN1	99	96.513	Vulpes_vulpes
ENSPTRG00000015482	XRN1	100	69.240	ENSXETG00000000619	xrn1	97	88.710	Xenopus_tropicalis
ENSPTRG00000015482	XRN1	100	61.476	ENSXCOG00000007917	xrn1	100	61.236	Xiphophorus_couchianus
ENSPTRG00000015482	XRN1	92	71.964	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus