EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000015760 (Gene tree)
Gene ID: 460944
Gene Symbol: LSG1
Alias: -
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 30848 bases
Position: chr3:199004518-199035365
Accession: 1865
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000050874	MMR_HSR1	PF01926.23	6.7e-14	1	1
ENSPTRP00000078144	MMR_HSR1	PF01926.23	6.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000057940	-	1974	-	ENSPTRP00000050874	657 (aa)	-	H2R7V1
ENSPTRT00000080848	-	3584	XM_516958	ENSPTRP00000078144	658 (aa)	XP_516958	A0A2I3SM78
ENSPTRT00000100913	-	519	-	ENSPTRP00000082017	172 (aa)	-	A0A2I3SZJ9

Gene Model

Click here to download ENSPTRG00000015760's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000015760's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000015760	LSG1	100	97.872	ENSG00000041802	LSG1	100	97.872	Homo_sapiens
ENSPTRG00000015760	LSG1	99	64.394	ENSAPOG00000009694	lsg1	99	64.697	Acanthochromis_polyacanthus
ENSPTRG00000015760	LSG1	99	82.701	ENSAMEG00000009343	LSG1	99	82.701	Ailuropoda_melanoleuca
ENSPTRG00000015760	LSG1	98	65.373	ENSACIG00000012406	lsg1	99	65.145	Amphilophus_citrinellus
ENSPTRG00000015760	LSG1	99	63.788	ENSAOCG00000016066	lsg1	99	64.394	Amphiprion_ocellaris
ENSPTRG00000015760	LSG1	99	63.939	ENSAPEG00000003252	lsg1	99	64.091	Amphiprion_percula
ENSPTRG00000015760	LSG1	98	65.062	ENSATEG00000011794	lsg1	99	64.992	Anabas_testudineus
ENSPTRG00000015760	LSG1	95	65.293	ENSACAG00000004222	LSG1	99	65.452	Anolis_carolinensis
ENSPTRG00000015760	LSG1	100	93.617	ENSANAG00000021153	LSG1	100	93.617	Aotus_nancymaae
ENSPTRG00000015760	LSG1	99	63.568	ENSACLG00000000520	lsg1	99	64.168	Astatotilapia_calliptera
ENSPTRG00000015760	LSG1	99	63.008	ENSAMXG00000008271	lsg1	99	63.473	Astyanax_mexicanus
ENSPTRG00000015760	LSG1	100	84.522	ENSBTAG00000008461	LSG1	100	84.825	Bos_taurus
ENSPTRG00000015760	LSG1	78	45.455	WBGene00016907	C53H9.2	95	58.871	Caenorhabditis_elegans
ENSPTRG00000015760	LSG1	100	92.553	ENSCJAG00000013962	LSG1	100	92.553	Callithrix_jacchus
ENSPTRG00000015760	LSG1	95	84.480	ENSCAFG00000013445	LSG1	99	84.480	Canis_familiaris
ENSPTRG00000015760	LSG1	99	83.056	ENSCAFG00020002216	LSG1	99	84.109	Canis_lupus_dingo
ENSPTRG00000015760	LSG1	99	84.347	ENSCHIG00000015769	LSG1	99	84.347	Capra_hircus
ENSPTRG00000015760	LSG1	100	88.619	ENSTSYG00000001447	LSG1	100	88.619	Carlito_syrichta
ENSPTRG00000015760	LSG1	95	76.592	ENSCAPG00000009856	LSG1	100	77.070	Cavia_aperea
ENSPTRG00000015760	LSG1	100	92.097	ENSCCAG00000035744	LSG1	100	92.097	Cebus_capucinus
ENSPTRG00000015760	LSG1	100	94.985	ENSCATG00000042060	LSG1	100	94.216	Cercocebus_atys
ENSPTRG00000015760	LSG1	100	95.441	ENSCSAG00000008796	LSG1	92	95.441	Chlorocebus_sabaeus
ENSPTRG00000015760	LSG1	99	70.060	ENSCPBG00000015941	LSG1	83	70.958	Chrysemys_picta_bellii
ENSPTRG00000015760	LSG1	66	61.780	ENSCING00000007079	-	92	61.780	Ciona_intestinalis
ENSPTRG00000015760	LSG1	84	49.189	ENSCSAVG00000002514	-	96	55.967	Ciona_savignyi
ENSPTRG00000015760	LSG1	100	95.593	ENSCANG00000030709	LSG1	100	95.593	Colobus_angolensis_palliatus
ENSPTRG00000015760	LSG1	100	81.667	ENSCGRG00001019846	Lsg1	100	81.667	Cricetulus_griseus_chok1gshd
ENSPTRG00000015760	LSG1	100	81.667	ENSCGRG00000014617	Lsg1	100	81.667	Cricetulus_griseus_crigri
ENSPTRG00000015760	LSG1	98	64.407	ENSCSEG00000008522	lsg1	99	63.897	Cynoglossus_semilaevis
ENSPTRG00000015760	LSG1	97	66.563	ENSCVAG00000002484	lsg1	99	66.818	Cyprinodon_variegatus
ENSPTRG00000015760	LSG1	99	67.223	ENSDARG00000015352	lsg1	99	67.166	Danio_rerio
ENSPTRG00000015760	LSG1	100	84.743	ENSDNOG00000006224	LSG1	100	84.743	Dasypus_novemcinctus
ENSPTRG00000015760	LSG1	82	57.377	FBgn0266284	Ns3	99	46.235	Drosophila_melanogaster
ENSPTRG00000015760	LSG1	89	88.000	ENSETEG00000003888	LSG1	89	88.000	Echinops_telfairi
ENSPTRG00000015760	LSG1	88	57.667	ENSEBUG00000003119	lsg1	85	57.815	Eptatretus_burgeri
ENSPTRG00000015760	LSG1	100	85.736	ENSEASG00005000678	LSG1	100	85.736	Equus_asinus_asinus
ENSPTRG00000015760	LSG1	100	85.888	ENSECAG00000017659	LSG1	100	85.888	Equus_caballus
ENSPTRG00000015760	LSG1	87	83.621	ENSEEUG00000015217	LSG1	87	83.621	Erinaceus_europaeus
ENSPTRG00000015760	LSG1	99	62.991	ENSELUG00000023973	lsg1	99	62.236	Esox_lucius
ENSPTRG00000015760	LSG1	99	85.258	ENSFCAG00000024957	LSG1	99	85.258	Felis_catus
ENSPTRG00000015760	LSG1	92	66.232	ENSFALG00000007210	LSG1	94	66.232	Ficedula_albicollis
ENSPTRG00000015760	LSG1	100	78.723	ENSFDAG00000017373	LSG1	100	79.059	Fukomys_damarensis
ENSPTRG00000015760	LSG1	97	64.253	ENSFHEG00000003680	lsg1	99	64.114	Fundulus_heteroclitus
ENSPTRG00000015760	LSG1	81	72.766	ENSGMOG00000015834	lsg1	87	71.084	Gadus_morhua
ENSPTRG00000015760	LSG1	99	64.448	ENSGALG00000007058	LSG1	87	64.910	Gallus_gallus
ENSPTRG00000015760	LSG1	97	66.303	ENSGAFG00000015831	lsg1	99	66.058	Gambusia_affinis
ENSPTRG00000015760	LSG1	98	63.134	ENSGACG00000009323	lsg1	99	62.801	Gasterosteus_aculeatus
ENSPTRG00000015760	LSG1	100	98.328	ENSGGOG00000000520	LSG1	100	98.328	Gorilla_gorilla
ENSPTRG00000015760	LSG1	99	63.952	ENSHBUG00000005659	lsg1	99	64.555	Haplochromis_burtoni
ENSPTRG00000015760	LSG1	100	77.074	ENSHGLG00000017390	LSG1	100	77.677	Heterocephalus_glaber_female
ENSPTRG00000015760	LSG1	100	76.923	ENSHGLG00100018587	LSG1	100	77.526	Heterocephalus_glaber_male
ENSPTRG00000015760	LSG1	97	63.988	ENSHCOG00000016848	lsg1	99	63.952	Hippocampus_comes
ENSPTRG00000015760	LSG1	99	65.250	ENSIPUG00000008631	lsg1	99	65.361	Ictalurus_punctatus
ENSPTRG00000015760	LSG1	90	79.184	ENSSTOG00000010234	LSG1	100	81.856	Ictidomys_tridecemlineatus
ENSPTRG00000015760	LSG1	100	80.363	ENSJJAG00000015513	Lsg1	100	80.363	Jaculus_jaculus
ENSPTRG00000015760	LSG1	98	63.272	ENSKMAG00000009681	lsg1	99	62.935	Kryptolebias_marmoratus
ENSPTRG00000015760	LSG1	99	65.109	ENSLACG00000013399	LSG1	99	65.109	Latimeria_chalumnae
ENSPTRG00000015760	LSG1	98	67.079	ENSLOCG00000004918	lsg1	99	66.717	Lepisosteus_oculatus
ENSPTRG00000015760	LSG1	100	83.308	ENSLAFG00000012919	-	100	83.308	Loxodonta_africana
ENSPTRG00000015760	LSG1	100	95.289	ENSMFAG00000039903	LSG1	100	94.521	Macaca_fascicularis
ENSPTRG00000015760	LSG1	100	95.441	ENSMMUG00000010708	LSG1	100	95.441	Macaca_mulatta
ENSPTRG00000015760	LSG1	100	95.137	ENSMNEG00000031538	LSG1	100	94.216	Macaca_nemestrina
ENSPTRG00000015760	LSG1	100	95.441	ENSMLEG00000041184	LSG1	100	95.441	Mandrillus_leucophaeus
ENSPTRG00000015760	LSG1	99	62.576	ENSMAMG00000000470	lsg1	99	62.576	Mastacembelus_armatus
ENSPTRG00000015760	LSG1	99	63.473	ENSMZEG00005017865	lsg1	99	64.072	Maylandia_zebra
ENSPTRG00000015760	LSG1	89	66.099	ENSMGAG00000007050	LSG1	99	66.271	Meleagris_gallopavo
ENSPTRG00000015760	LSG1	91	79.602	ENSMAUG00000016976	Lsg1	93	80.265	Mesocricetus_auratus
ENSPTRG00000015760	LSG1	100	85.281	ENSMICG00000049087	LSG1	100	85.281	Microcebus_murinus
ENSPTRG00000015760	LSG1	100	79.758	ENSMOCG00000022136	Lsg1	100	80.211	Microtus_ochrogaster
ENSPTRG00000015760	LSG1	83	72.517	ENSMMOG00000008884	lsg1	99	68.571	Mola_mola
ENSPTRG00000015760	LSG1	99	58.824	ENSMODG00000019828	LSG1	99	59.125	Monodelphis_domestica
ENSPTRG00000015760	LSG1	100	81.155	MGP_CAROLIEiJ_G0020648	Lsg1	100	81.155	Mus_caroli
ENSPTRG00000015760	LSG1	100	81.307	ENSMUSG00000022538	Lsg1	100	81.307	Mus_musculus
ENSPTRG00000015760	LSG1	98	81.481	MGP_PahariEiJ_G0016352	Lsg1	100	81.487	Mus_pahari
ENSPTRG00000015760	LSG1	100	81.307	MGP_SPRETEiJ_G0021544	Lsg1	100	81.307	Mus_spretus
ENSPTRG00000015760	LSG1	99	83.435	ENSMPUG00000003734	LSG1	99	83.435	Mustela_putorius_furo
ENSPTRG00000015760	LSG1	99	85.129	ENSMLUG00000012548	LSG1	99	85.129	Myotis_lucifugus
ENSPTRG00000015760	LSG1	100	81.184	ENSNGAG00000021872	Lsg1	100	81.184	Nannospalax_galili
ENSPTRG00000015760	LSG1	100	95.586	ENSNLEG00000008293	LSG1	100	95.586	Nomascus_leucogenys
ENSPTRG00000015760	LSG1	69	69.748	ENSMEUG00000009041	-	84	69.748	Notamacropus_eugenii
ENSPTRG00000015760	LSG1	99	63.746	ENSONIG00000002635	lsg1	99	64.042	Oreochromis_niloticus
ENSPTRG00000015760	LSG1	95	72.408	ENSOANG00000012742	LSG1	99	72.408	Ornithorhynchus_anatinus
ENSPTRG00000015760	LSG1	100	85.432	ENSOCUG00000004817	LSG1	100	85.432	Oryctolagus_cuniculus
ENSPTRG00000015760	LSG1	98	63.820	ENSORLG00000007695	lsg1	99	63.623	Oryzias_latipes
ENSPTRG00000015760	LSG1	98	63.665	ENSORLG00020016286	lsg1	99	63.166	Oryzias_latipes_hni
ENSPTRG00000015760	LSG1	98	63.820	ENSORLG00015012025	lsg1	99	63.470	Oryzias_latipes_hsok
ENSPTRG00000015760	LSG1	98	62.171	ENSOMEG00000022379	lsg1	99	62.236	Oryzias_melastigma
ENSPTRG00000015760	LSG1	100	85.498	ENSOGAG00000003475	LSG1	100	85.498	Otolemur_garnettii
ENSPTRG00000015760	LSG1	99	84.219	ENSOARG00000020403	LSG1	99	84.522	Ovis_aries
ENSPTRG00000015760	LSG1	100	99.696	ENSPPAG00000029271	LSG1	100	99.696	Pan_paniscus
ENSPTRG00000015760	LSG1	99	84.812	ENSPPRG00000010281	LSG1	99	84.812	Panthera_pardus
ENSPTRG00000015760	LSG1	99	85.562	ENSPTIG00000010789	LSG1	99	85.562	Panthera_tigris_altaica
ENSPTRG00000015760	LSG1	100	95.289	ENSPANG00000018249	LSG1	100	94.521	Papio_anubis
ENSPTRG00000015760	LSG1	96	65.204	ENSPKIG00000002895	lsg1	100	64.253	Paramormyrops_kingsleyae
ENSPTRG00000015760	LSG1	96	65.839	ENSPSIG00000009821	LSG1	99	65.839	Pelodiscus_sinensis
ENSPTRG00000015760	LSG1	95	65.127	ENSPMGG00000000931	lsg1	99	65.127	Periophthalmus_magnuspinnatus
ENSPTRG00000015760	LSG1	100	81.118	ENSPEMG00000012082	-	100	81.118	Peromyscus_maniculatus_bairdii
ENSPTRG00000015760	LSG1	99	59.912	ENSPMAG00000007451	lsg1	99	59.912	Petromyzon_marinus
ENSPTRG00000015760	LSG1	99	66.492	ENSPCIG00000013890	LSG1	82	66.492	Phascolarctos_cinereus
ENSPTRG00000015760	LSG1	97	66.512	ENSPFOG00000021882	lsg1	99	66.263	Poecilia_formosa
ENSPTRG00000015760	LSG1	97	65.271	ENSPLAG00000019536	lsg1	99	65.507	Poecilia_latipinna
ENSPTRG00000015760	LSG1	97	65.688	ENSPMEG00000017281	lsg1	99	65.460	Poecilia_mexicana
ENSPTRG00000015760	LSG1	97	55.403	ENSPREG00000006048	lsg1	99	56.166	Poecilia_reticulata
ENSPTRG00000015760	LSG1	92	95.058	ENSPPYG00000014425	LSG1	100	95.058	Pongo_abelii
ENSPTRG00000015760	LSG1	91	88.000	ENSPCAG00000005511	LSG1	90	88.000	Procavia_capensis
ENSPTRG00000015760	LSG1	100	86.950	ENSPCOG00000012360	LSG1	100	86.950	Propithecus_coquereli
ENSPTRG00000015760	LSG1	99	63.418	ENSPNYG00000021994	lsg1	99	64.018	Pundamilia_nyererei
ENSPTRG00000015760	LSG1	99	65.008	ENSPNAG00000015533	lsg1	99	65.008	Pygocentrus_nattereri
ENSPTRG00000015760	LSG1	100	81.750	ENSRNOG00000001727	Lsg1	100	81.750	Rattus_norvegicus
ENSPTRG00000015760	LSG1	100	94.529	ENSRBIG00000029053	LSG1	100	94.529	Rhinopithecus_bieti
ENSPTRG00000015760	LSG1	100	94.529	ENSRROG00000037702	LSG1	100	94.529	Rhinopithecus_roxellana
ENSPTRG00000015760	LSG1	66	58.084	YGL099W	LSG1	68	58.084	Saccharomyces_cerevisiae
ENSPTRG00000015760	LSG1	100	93.313	ENSSBOG00000034938	LSG1	100	93.313	Saimiri_boliviensis_boliviensis
ENSPTRG00000015760	LSG1	79	66.286	ENSSHAG00000003487	LSG1	99	66.981	Sarcophilus_harrisii
ENSPTRG00000015760	LSG1	98	64.241	ENSSFOG00015008955	lsg1	99	64.103	Scleropages_formosus
ENSPTRG00000015760	LSG1	98	63.982	ENSSDUG00000004622	lsg1	99	64.382	Seriola_dumerili
ENSPTRG00000015760	LSG1	98	63.889	ENSSLDG00000010869	lsg1	99	64.145	Seriola_lalandi_dorsalis
ENSPTRG00000015760	LSG1	81	83.235	ENSSARG00000012981	LSG1	84	82.402	Sorex_araneus
ENSPTRG00000015760	LSG1	91	77.049	ENSSPUG00000016347	LSG1	99	77.049	Sphenodon_punctatus
ENSPTRG00000015760	LSG1	99	63.030	ENSSPAG00000005508	lsg1	99	64.091	Stegastes_partitus
ENSPTRG00000015760	LSG1	99	83.435	ENSSSCG00000011827	LSG1	99	83.587	Sus_scrofa
ENSPTRG00000015760	LSG1	89	63.953	ENSTGUG00000009068	LSG1	99	63.953	Taeniopygia_guttata
ENSPTRG00000015760	LSG1	97	61.622	ENSTRUG00000017380	lsg1	99	61.339	Takifugu_rubripes
ENSPTRG00000015760	LSG1	97	65.123	ENSTNIG00000015570	lsg1	99	64.653	Tetraodon_nigroviridis
ENSPTRG00000015760	LSG1	99	77.390	ENSTTRG00000000559	LSG1	99	77.390	Tursiops_truncatus
ENSPTRG00000015760	LSG1	99	83.891	ENSUAMG00000012454	LSG1	99	83.891	Ursus_americanus
ENSPTRG00000015760	LSG1	99	83.891	ENSUMAG00000000855	LSG1	99	83.891	Ursus_maritimus
ENSPTRG00000015760	LSG1	95	80.160	ENSVPAG00000012400	LSG1	99	80.160	Vicugna_pacos
ENSPTRG00000015760	LSG1	95	83.680	ENSVVUG00000008956	LSG1	97	83.680	Vulpes_vulpes
ENSPTRG00000015760	LSG1	99	65.865	ENSXETG00000003451	lsg1	99	66.820	Xenopus_tropicalis
ENSPTRG00000015760	LSG1	97	65.284	ENSXCOG00000003239	lsg1	99	65.067	Xiphophorus_couchianus
ENSPTRG00000015760	LSG1	97	65.265	ENSXMAG00000005536	lsg1	99	65.046	Xiphophorus_maculatus