EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000016364 (Gene tree)
Gene ID: 461433
Gene Symbol: GAR1
Alias: -
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 8879 bases
Position: chr4:112791400-112800278
Accession: 2006
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000028109	Gar1	PF04410.14	1.2e-38	1	1
ENSPTRP00000062550	Gar1	PF04410.14	1.2e-38	1	1
ENSPTRP00000080078	Gar1	PF04410.14	1.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000030443	-	857	-	ENSPTRP00000028109	198 (aa)	-	H2QQ10
ENSPTRT00000104846	-	654	XM_009448127	ENSPTRP00000080078	217 (aa)	XP_009446402	K7BE62
ENSPTRT00000085747	-	795	-	ENSPTRP00000062550	198 (aa)	-	H2QQ10

Gene Model

Click here to download ENSPTRG00000016364's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000016364's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000016364	GAR1	88	81.651	ENSPTRG00000049340	-	66	73.913

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000016364	GAR1	100	99.539	ENSG00000109534	GAR1	100	99.539	Homo_sapiens
ENSPTRG00000016364	GAR1	54	94.393	ENSAPOG00000019754	gar1	52	92.727	Acanthochromis_polyacanthus
ENSPTRG00000016364	GAR1	55	98.165	ENSAMEG00000004605	GAR1	54	98.182	Ailuropoda_melanoleuca
ENSPTRG00000016364	GAR1	54	94.393	ENSAOCG00000020947	gar1	51	92.727	Amphiprion_ocellaris
ENSPTRG00000016364	GAR1	54	94.393	ENSAPEG00000001676	gar1	51	92.727	Amphiprion_percula
ENSPTRG00000016364	GAR1	54	94.393	ENSATEG00000003733	gar1	51	92.727	Anabas_testudineus
ENSPTRG00000016364	GAR1	54	89.623	ENSAPLG00000010926	GAR1	60	88.889	Anas_platyrhynchos
ENSPTRG00000016364	GAR1	54	91.509	ENSACAG00000010031	GAR1	51	90.741	Anolis_carolinensis
ENSPTRG00000016364	GAR1	100	98.624	ENSANAG00000021608	GAR1	100	98.624	Aotus_nancymaae
ENSPTRG00000016364	GAR1	55	99.083	ENSBTAG00000000748	GAR1	52	99.091	Bos_taurus
ENSPTRG00000016364	GAR1	100	98.165	ENSCJAG00000004041	GAR1	100	98.165	Callithrix_jacchus
ENSPTRG00000016364	GAR1	54	99.057	ENSCAFG00020015566	GAR1	57	99.091	Canis_lupus_dingo
ENSPTRG00000016364	GAR1	56	99.091	ENSCHIG00000016026	-	53	99.091	Capra_hircus
ENSPTRG00000016364	GAR1	100	94.954	ENSTSYG00000013668	-	52	100.000	Carlito_syrichta
ENSPTRG00000016364	GAR1	55	91.743	ENSTSYG00000026632	-	56	91.818	Carlito_syrichta
ENSPTRG00000016364	GAR1	56	99.091	ENSCPOG00000004216	GAR1	51	99.091	Cavia_porcellus
ENSPTRG00000016364	GAR1	100	98.624	ENSCCAG00000029372	GAR1	100	98.624	Cebus_capucinus
ENSPTRG00000016364	GAR1	100	99.078	ENSCATG00000021854	GAR1	100	99.078	Cercocebus_atys
ENSPTRG00000016364	GAR1	61	97.521	ENSCLAG00000005335	GAR1	99	94.937	Chinchilla_lanigera
ENSPTRG00000016364	GAR1	100	98.990	ENSCSAG00000003922	GAR1	100	98.990	Chlorocebus_sabaeus
ENSPTRG00000016364	GAR1	56	99.099	ENSCHOG00000007484	-	51	99.138	Choloepus_hoffmanni
ENSPTRG00000016364	GAR1	54	92.453	ENSCPBG00000004310	GAR1	56	90.909	Chrysemys_picta_bellii
ENSPTRG00000016364	GAR1	100	98.157	ENSCANG00000039262	GAR1	100	98.157	Colobus_angolensis_palliatus
ENSPTRG00000016364	GAR1	55	96.330	ENSCGRG00001003919	Gar1	50	96.364	Cricetulus_griseus_chok1gshd
ENSPTRG00000016364	GAR1	54	93.458	ENSCSEG00000003525	gar1	50	91.818	Cynoglossus_semilaevis
ENSPTRG00000016364	GAR1	54	94.393	ENSCVAG00000002103	gar1	53	92.727	Cyprinodon_variegatus
ENSPTRG00000016364	GAR1	54	91.589	ENSDARG00000076526	gar1	68	77.124	Danio_rerio
ENSPTRG00000016364	GAR1	55	99.083	ENSDNOG00000037632	GAR1	56	99.091	Dasypus_novemcinctus
ENSPTRG00000016364	GAR1	73	92.361	ENSDORG00000000482	Gar1	51	96.364	Dipodomys_ordii
ENSPTRG00000016364	GAR1	87	53.947	FBgn0011824	CG4038	84	57.241	Drosophila_melanogaster
ENSPTRG00000016364	GAR1	56	98.182	ENSEASG00005004658	GAR1	51	98.182	Equus_asinus_asinus
ENSPTRG00000016364	GAR1	56	99.091	ENSECAG00000013624	GAR1	56	99.091	Equus_caballus
ENSPTRG00000016364	GAR1	69	62.609	ENSFCAG00000025841	-	74	62.931	Felis_catus
ENSPTRG00000016364	GAR1	55	99.083	ENSFCAG00000040791	-	53	99.091	Felis_catus
ENSPTRG00000016364	GAR1	54	93.396	ENSFALG00000006445	GAR1	66	79.861	Ficedula_albicollis
ENSPTRG00000016364	GAR1	56	91.892	ENSFHEG00000008068	gar1	51	91.818	Fundulus_heteroclitus
ENSPTRG00000016364	GAR1	53	93.269	ENSGAGG00000004393	GAR1	56	90.826	Gopherus_agassizii
ENSPTRG00000016364	GAR1	100	99.078	ENSGGOG00000008681	GAR1	100	99.078	Gorilla_gorilla
ENSPTRG00000016364	GAR1	56	80.180	ENSGGOG00000036205	-	54	80.734	Gorilla_gorilla
ENSPTRG00000016364	GAR1	54	98.131	ENSHGLG00000000493	GAR1	99	97.333	Heterocephalus_glaber_female
ENSPTRG00000016364	GAR1	68	84.444	ENSIPUG00000003194	gar1	52	90.000	Ictalurus_punctatus
ENSPTRG00000016364	GAR1	55	97.248	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSPTRG00000016364	GAR1	56	89.189	ENSKMAG00000010402	gar1	52	90.000	Kryptolebias_marmoratus
ENSPTRG00000016364	GAR1	79	84.298	ENSLACG00000003306	GAR1	65	87.037	Latimeria_chalumnae
ENSPTRG00000016364	GAR1	55	84.259	ENSMFAG00000003572	-	54	82.727	Macaca_fascicularis
ENSPTRG00000016364	GAR1	100	99.078	ENSMFAG00000024592	GAR1	100	99.078	Macaca_fascicularis
ENSPTRG00000016364	GAR1	100	99.078	ENSMMUG00000021225	GAR1	100	99.078	Macaca_mulatta
ENSPTRG00000016364	GAR1	100	99.078	ENSMNEG00000042594	GAR1	100	99.078	Macaca_nemestrina
ENSPTRG00000016364	GAR1	99	98.605	ENSMLEG00000002496	GAR1	99	98.605	Mandrillus_leucophaeus
ENSPTRG00000016364	GAR1	55	96.330	ENSMAUG00000016788	Gar1	70	98.182	Mesocricetus_auratus
ENSPTRG00000016364	GAR1	57	98.214	ENSMICG00000003326	GAR1	51	99.091	Microcebus_murinus
ENSPTRG00000016364	GAR1	55	95.413	ENSMOCG00000001340	Gar1	70	100.000	Microtus_ochrogaster
ENSPTRG00000016364	GAR1	54	95.327	ENSMMOG00000004156	gar1	52	95.327	Mola_mola
ENSPTRG00000016364	GAR1	75	75.168	ENSMALG00000009672	gar1	52	92.035	Monopterus_albus
ENSPTRG00000016364	GAR1	55	96.330	MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	Mus_caroli
ENSPTRG00000016364	GAR1	56	96.364	ENSMUSG00000028010	Gar1	70	100.000	Mus_musculus
ENSPTRG00000016364	GAR1	88	93.264	MGP_PahariEiJ_G0027076	Gar1	100	95.213	Mus_pahari
ENSPTRG00000016364	GAR1	56	96.364	MGP_SPRETEiJ_G0026580	Gar1	70	100.000	Mus_spretus
ENSPTRG00000016364	GAR1	100	93.119	ENSMPUG00000008615	GAR1	53	99.091	Mustela_putorius_furo
ENSPTRG00000016364	GAR1	56	98.182	ENSNGAG00000008268	Gar1	92	98.592	Nannospalax_galili
ENSPTRG00000016364	GAR1	56	83.784	ENSNLEG00000034282	-	56	83.636	Nomascus_leucogenys
ENSPTRG00000016364	GAR1	100	97.696	ENSNLEG00000016578	GAR1	100	97.696	Nomascus_leucogenys
ENSPTRG00000016364	GAR1	54	98.131	ENSODEG00000011083	GAR1	57	97.273	Octodon_degus
ENSPTRG00000016364	GAR1	54	94.393	ENSONIG00000001085	gar1	50	92.727	Oreochromis_niloticus
ENSPTRG00000016364	GAR1	55	99.083	ENSOCUG00000003901	GAR1	51	99.091	Oryctolagus_cuniculus
ENSPTRG00000016364	GAR1	54	94.393	ENSORLG00000020583	gar1	50	92.727	Oryzias_latipes
ENSPTRG00000016364	GAR1	54	94.393	ENSORLG00020008602	gar1	50	92.727	Oryzias_latipes_hni
ENSPTRG00000016364	GAR1	54	94.393	ENSORLG00015017643	gar1	50	92.727	Oryzias_latipes_hsok
ENSPTRG00000016364	GAR1	100	94.977	ENSOGAG00000004693	GAR1	52	99.091	Otolemur_garnettii
ENSPTRG00000016364	GAR1	55	99.083	ENSOARG00000004910	GAR1	52	99.091	Ovis_aries
ENSPTRG00000016364	GAR1	100	99.083	ENSPPAG00000014081	GAR1	100	99.083	Pan_paniscus
ENSPTRG00000016364	GAR1	100	93.119	ENSPPRG00000023697	GAR1	53	99.091	Panthera_pardus
ENSPTRG00000016364	GAR1	100	93.119	ENSPTIG00000021565	GAR1	53	99.091	Panthera_tigris_altaica
ENSPTRG00000016364	GAR1	100	99.078	ENSPANG00000000639	GAR1	100	99.078	Papio_anubis
ENSPTRG00000016364	GAR1	84	74.251	ENSPKIG00000018991	gar1	66	85.034	Paramormyrops_kingsleyae
ENSPTRG00000016364	GAR1	54	92.453	ENSPSIG00000002970	GAR1	50	90.909	Pelodiscus_sinensis
ENSPTRG00000016364	GAR1	55	96.330	ENSPEMG00000015838	Gar1	70	98.182	Peromyscus_maniculatus_bairdii
ENSPTRG00000016364	GAR1	55	92.593	ENSPCIG00000018912	GAR1	52	87.805	Phascolarctos_cinereus
ENSPTRG00000016364	GAR1	54	93.458	ENSPFOG00000024155	gar1	52	91.818	Poecilia_formosa
ENSPTRG00000016364	GAR1	54	93.458	ENSPLAG00000015056	gar1	52	91.818	Poecilia_latipinna
ENSPTRG00000016364	GAR1	54	94.393	ENSPMEG00000009320	gar1	53	92.727	Poecilia_mexicana
ENSPTRG00000016364	GAR1	100	99.078	ENSPPYG00000014996	GAR1	100	99.078	Pongo_abelii
ENSPTRG00000016364	GAR1	54	100.000	ENSPCOG00000027049	GAR1	56	100.000	Propithecus_coquereli
ENSPTRG00000016364	GAR1	56	97.273	ENSRNOG00000061146	Gar1	64	97.273	Rattus_norvegicus
ENSPTRG00000016364	GAR1	100	98.618	ENSRBIG00000019547	GAR1	100	98.618	Rhinopithecus_bieti
ENSPTRG00000016364	GAR1	57	82.143	ENSRBIG00000042411	-	53	81.818	Rhinopithecus_bieti
ENSPTRG00000016364	GAR1	57	82.143	ENSRROG00000044348	-	53	81.818	Rhinopithecus_roxellana
ENSPTRG00000016364	GAR1	100	99.078	ENSRROG00000028454	GAR1	100	99.078	Rhinopithecus_roxellana
ENSPTRG00000016364	GAR1	61	52.846	YHR089C	-	78	48.092	Saccharomyces_cerevisiae
ENSPTRG00000016364	GAR1	55	100.000	ENSSBOG00000024785	GAR1	51	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000016364	GAR1	54	91.589	ENSSMAG00000009976	gar1	53	88.793	Scophthalmus_maximus
ENSPTRG00000016364	GAR1	54	93.458	ENSSLDG00000023264	gar1	52	91.818	Seriola_lalandi_dorsalis
ENSPTRG00000016364	GAR1	54	93.396	ENSSPUG00000008707	GAR1	61	91.818	Sphenodon_punctatus
ENSPTRG00000016364	GAR1	54	94.393	ENSSPAG00000005974	gar1	54	91.935	Stegastes_partitus
ENSPTRG00000016364	GAR1	85	88.690	ENSSSCG00000009137	GAR1	54	99.091	Sus_scrofa
ENSPTRG00000016364	GAR1	50	89.899	ENSTGUG00000004185	GAR1	67	89.899	Taeniopygia_guttata
ENSPTRG00000016364	GAR1	54	90.654	ENSTRUG00000020580	gar1	53	89.091	Takifugu_rubripes
ENSPTRG00000016364	GAR1	53	93.269	ENSTNIG00000013023	gar1	63	91.818	Tetraodon_nigroviridis
ENSPTRG00000016364	GAR1	100	92.462	ENSUAMG00000005652	GAR1	100	92.462	Ursus_americanus
ENSPTRG00000016364	GAR1	100	92.202	ENSUMAG00000000776	GAR1	100	92.202	Ursus_maritimus
ENSPTRG00000016364	GAR1	55	99.083	ENSVVUG00000017612	GAR1	57	99.091	Vulpes_vulpes