EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000016955 (Gene tree)
Gene ID: 461829
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 27222 bases
Position: chr5:44603143-44630364
Accession: 461829
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000090139	SMN	PF06003.12	5e-99	1	1
ENSPTRP00000068113	SMN	PF06003.12	1.1e-93	1	1
ENSPTRP00000083515	SMN	PF06003.12	1.1e-93	1	1
ENSPTRP00000029048	SMN	PF06003.12	1.2e-93	1	1
ENSPTRP00000064572	SMN	PF06003.12	7.9e-91	1	2
ENSPTRP00000064572	SMN	PF06003.12	7.9e-91	2	2
ENSPTRP00000075974	SMN	PF06003.12	1e-53	1	2
ENSPTRP00000075974	SMN	PF06003.12	1e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000088111	-	894	-	ENSPTRP00000068113	297 (aa)	-	A0A2J8L0U3
ENSPTRT00000090537	-	962	XM_001156259	ENSPTRP00000064572	262 (aa)	XP_001156259	K7BPE5
ENSPTRT00000101315	-	693	-	ENSPTRP00000075974	230 (aa)	-	A0A2I3SG05
ENSPTRT00000031451	-	855	-	ENSPTRP00000029048	285 (aa)	-	H2QR14
ENSPTRT00000084001	-	1067	XM_001156488	ENSPTRP00000090139	297 (aa)	XP_001156488	A0A2I3TMK9
ENSPTRT00000091690	-	858	XM_001156201	ENSPTRP00000083515	285 (aa)	XP_001156201	A0A2I3T3Q2

Gene Model

Click here to download ENSPTRG00000016955's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000016955's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000016955	-	100	100.000	ENSG00000172062	SMN1	100	100.000	Homo_sapiens
ENSPTRG00000016955	-	100	100.000	ENSG00000205571	SMN2	100	100.000	Homo_sapiens
ENSPTRG00000016955	-	92	51.685	ENSAPOG00000011324	smn1	94	51.957	Acanthochromis_polyacanthus
ENSPTRG00000016955	-	95	87.676	ENSAMEG00000003316	-	93	87.676	Ailuropoda_melanoleuca
ENSPTRG00000016955	-	92	51.111	ENSACIG00000019772	-	97	49.430	Amphilophus_citrinellus
ENSPTRG00000016955	-	92	51.685	ENSAOCG00000024444	smn1	94	51.957	Amphiprion_ocellaris
ENSPTRG00000016955	-	92	52.060	ENSAPEG00000016504	smn1	94	52.313	Amphiprion_percula
ENSPTRG00000016955	-	92	54.104	ENSATEG00000002182	smn1	83	53.147	Anabas_testudineus
ENSPTRG00000016955	-	68	56.186	ENSAPLG00000010912	-	97	52.451	Anas_platyrhynchos
ENSPTRG00000016955	-	84	81.633	ENSACAG00000010017	-	95	57.090	Anolis_carolinensis
ENSPTRG00000016955	-	100	91.919	ENSANAG00000032133	-	100	91.919	Aotus_nancymaae
ENSPTRG00000016955	-	92	53.480	ENSACLG00000007308	smn1	88	52.896	Astatotilapia_calliptera
ENSPTRG00000016955	-	54	57.746	ENSAMXG00000013884	smn1	97	49.265	Astyanax_mexicanus
ENSPTRG00000016955	-	95	83.395	ENSBTAG00000005743	SMN2	97	82.746	Bos_taurus
ENSPTRG00000016955	-	89	31.008	WBGene00004887	smn-1	94	32.432	Caenorhabditis_elegans
ENSPTRG00000016955	-	100	95.604	ENSCJAG00000016290	-	100	95.604	Callithrix_jacchus
ENSPTRG00000016955	-	95	87.676	ENSCAFG00000007812	SMN	97	87.676	Canis_familiaris
ENSPTRG00000016955	-	95	87.676	ENSCAFG00020019229	-	90	87.676	Canis_lupus_dingo
ENSPTRG00000016955	-	95	84.871	ENSCHIG00000015559	-	95	84.155	Capra_hircus
ENSPTRG00000016955	-	99	88.846	ENSTSYG00000012058	-	96	92.500	Carlito_syrichta
ENSPTRG00000016955	-	79	66.234	ENSCAPG00000011021	-	100	66.234	Cavia_aperea
ENSPTRG00000016955	-	100	81.522	ENSCPOG00000012328	-	96	80.000	Cavia_porcellus
ENSPTRG00000016955	-	99	83.908	ENSCPOG00000036973	-	99	80.068	Cavia_porcellus
ENSPTRG00000016955	-	100	94.656	ENSCCAG00000018127	-	100	94.656	Cebus_capucinus
ENSPTRG00000016955	-	100	96.947	ENSCATG00000037002	-	100	96.947	Cercocebus_atys
ENSPTRG00000016955	-	99	80.000	ENSCLAG00000000284	-	99	80.000	Chinchilla_lanigera
ENSPTRG00000016955	-	100	96.703	ENSCSAG00000015688	-	100	95.960	Chlorocebus_sabaeus
ENSPTRG00000016955	-	81	82.812	ENSCHOG00000007346	-	100	73.413	Choloepus_hoffmanni
ENSPTRG00000016955	-	99	61.268	ENSCPBG00000010968	-	99	61.538	Chrysemys_picta_bellii
ENSPTRG00000016955	-	99	90.426	ENSCANG00000033324	-	100	85.496	Colobus_angolensis_palliatus
ENSPTRG00000016955	-	100	96.947	ENSCANG00000038242	-	100	96.947	Colobus_angolensis_palliatus
ENSPTRG00000016955	-	99	63.051	ENSCGRG00001016998	-	96	63.380	Cricetulus_griseus_chok1gshd
ENSPTRG00000016955	-	95	88.000	ENSCGRG00001017959	-	97	82.746	Cricetulus_griseus_chok1gshd
ENSPTRG00000016955	-	95	88.000	ENSCGRG00000007698	Smn1	97	82.746	Cricetulus_griseus_crigri
ENSPTRG00000016955	-	94	49.821	ENSCSEG00000015227	smn1	97	49.822	Cynoglossus_semilaevis
ENSPTRG00000016955	-	94	51.481	ENSCVAG00000007498	smn1	94	51.095	Cyprinodon_variegatus
ENSPTRG00000016955	-	93	52.206	ENSDARG00000018494	smn1	96	50.859	Danio_rerio
ENSPTRG00000016955	-	82	82.787	ENSDNOG00000007283	-	99	82.787	Dasypus_novemcinctus
ENSPTRG00000016955	-	77	73.134	ENSDNOG00000045949	-	86	72.549	Dasypus_novemcinctus
ENSPTRG00000016955	-	99	81.944	ENSDORG00000007082	Smn1	99	77.551	Dipodomys_ordii
ENSPTRG00000016955	-	80	70.000	ENSETEG00000001406	-	89	70.109	Echinops_telfairi
ENSPTRG00000016955	-	94	40.972	ENSEBUG00000011902	smn1	93	38.966	Eptatretus_burgeri
ENSPTRG00000016955	-	99	76.056	ENSEASG00005018000	-	89	81.569	Equus_asinus_asinus
ENSPTRG00000016955	-	90	93.651	ENSECAG00000015215	-	96	86.219	Equus_caballus
ENSPTRG00000016955	-	89	80.392	ENSEEUG00000015777	-	100	79.216	Erinaceus_europaeus
ENSPTRG00000016955	-	93	54.545	ENSELUG00000018067	smn1	94	52.650	Esox_lucius
ENSPTRG00000016955	-	99	88.077	ENSFCAG00000028292	SMN	97	88.732	Felis_catus
ENSPTRG00000016955	-	91	58.182	ENSFALG00000012320	-	94	57.455	Ficedula_albicollis
ENSPTRG00000016955	-	95	82.278	ENSFDAG00000017683	-	99	79.000	Fukomys_damarensis
ENSPTRG00000016955	-	92	51.527	ENSFHEG00000018508	smn1	96	50.534	Fundulus_heteroclitus
ENSPTRG00000016955	-	96	48.364	ENSGMOG00000017279	smn1	93	46.545	Gadus_morhua
ENSPTRG00000016955	-	93	58.582	ENSGALG00000002430	SMN	95	56.727	Gallus_gallus
ENSPTRG00000016955	-	90	55.372	ENSGAFG00000009501	smn1	93	55.602	Gambusia_affinis
ENSPTRG00000016955	-	92	51.136	ENSGACG00000010584	smn1	91	51.838	Gasterosteus_aculeatus
ENSPTRG00000016955	-	93	36.434	ENSGAGG00000013639	-	89	38.503	Gopherus_agassizii
ENSPTRG00000016955	-	97	61.364	ENSGAGG00000011374	-	97	60.915	Gopherus_agassizii
ENSPTRG00000016955	-	100	85.878	ENSGGOG00000026704	-	99	99.524	Gorilla_gorilla
ENSPTRG00000016955	-	97	97.266	ENSGGOG00000003872	-	100	100.000	Gorilla_gorilla
ENSPTRG00000016955	-	92	53.480	ENSHBUG00000013987	smn1	94	52.857	Haplochromis_burtoni
ENSPTRG00000016955	-	99	78.667	ENSHGLG00000001018	-	96	79.931	Heterocephalus_glaber_female
ENSPTRG00000016955	-	99	77.627	ENSHGLG00000001905	-	99	77.627	Heterocephalus_glaber_female
ENSPTRG00000016955	-	99	76.950	ENSHGLG00100018676	-	100	77.193	Heterocephalus_glaber_male
ENSPTRG00000016955	-	99	78.667	ENSHGLG00100011252	-	96	79.931	Heterocephalus_glaber_male
ENSPTRG00000016955	-	87	80.851	ENSHCOG00000017136	smn1	87	50.558	Hippocampus_comes
ENSPTRG00000016955	-	91	50.923	ENSIPUG00000012580	smn1	85	48.592	Ictalurus_punctatus
ENSPTRG00000016955	-	99	85.816	ENSSTOG00000012288	-	100	85.816	Ictidomys_tridecemlineatus
ENSPTRG00000016955	-	66	60.920	ENSJJAG00000014853	-	89	64.571	Jaculus_jaculus
ENSPTRG00000016955	-	92	53.791	ENSKMAG00000007239	smn1	96	53.232	Kryptolebias_marmoratus
ENSPTRG00000016955	-	92	51.812	ENSLBEG00000022550	smn1	94	52.555	Labrus_bergylta
ENSPTRG00000016955	-	93	36.655	ENSLACG00000009808	-	90	36.131	Latimeria_chalumnae
ENSPTRG00000016955	-	90	52.033	ENSLOCG00000011339	smn1	93	55.328	Lepisosteus_oculatus
ENSPTRG00000016955	-	99	85.714	ENSLAFG00000003425	-	100	81.690	Loxodonta_africana
ENSPTRG00000016955	-	100	93.407	ENSMFAG00000008812	-	100	91.582	Macaca_fascicularis
ENSPTRG00000016955	-	100	97.802	ENSMFAG00000031523	SMN1	100	97.802	Macaca_fascicularis
ENSPTRG00000016955	-	100	91.246	ENSMMUG00000030594	-	100	90.909	Macaca_mulatta
ENSPTRG00000016955	-	100	97.802	ENSMMUG00000020214	SMN1	100	97.802	Macaca_mulatta
ENSPTRG00000016955	-	76	82.743	ENSMNEG00000036423	-	87	82.301	Macaca_nemestrina
ENSPTRG00000016955	-	100	97.802	ENSMNEG00000035094	-	100	97.802	Macaca_nemestrina
ENSPTRG00000016955	-	100	97.328	ENSMLEG00000041902	-	100	97.328	Mandrillus_leucophaeus
ENSPTRG00000016955	-	92	51.880	ENSMAMG00000011034	smn1	94	51.429	Mastacembelus_armatus
ENSPTRG00000016955	-	92	53.480	ENSMZEG00005013634	smn1	94	53.480	Maylandia_zebra
ENSPTRG00000016955	-	68	55.155	ENSMGAG00000008889	-	95	52.475	Meleagris_gallopavo
ENSPTRG00000016955	-	95	85.333	ENSMAUG00000010262	Smn1	96	81.915	Mesocricetus_auratus
ENSPTRG00000016955	-	99	89.011	ENSMICG00000034708	-	99	89.011	Microcebus_murinus
ENSPTRG00000016955	-	99	80.071	ENSMOCG00000017833	Smn1	97	80.634	Microtus_ochrogaster
ENSPTRG00000016955	-	93	50.566	ENSMMOG00000005504	smn1	94	53.008	Mola_mola
ENSPTRG00000016955	-	87	83.333	ENSMODG00000001436	-	95	68.293	Monodelphis_domestica
ENSPTRG00000016955	-	93	48.905	ENSMALG00000008025	smn1	94	48.897	Monopterus_albus
ENSPTRG00000016955	-	99	82.418	MGP_CAROLIEiJ_G0018836	Smn1	96	82.270	Mus_caroli
ENSPTRG00000016955	-	99	81.319	ENSMUSG00000021645	Smn1	96	82.270	Mus_musculus
ENSPTRG00000016955	-	99	80.220	MGP_PahariEiJ_G0015911	Smn1	96	79.078	Mus_pahari
ENSPTRG00000016955	-	99	81.319	MGP_SPRETEiJ_G0019718	Smn1	96	81.560	Mus_spretus
ENSPTRG00000016955	-	99	87.633	ENSMPUG00000014470	-	95	88.603	Mustela_putorius_furo
ENSPTRG00000016955	-	95	88.153	ENSMLUG00000010603	-	92	88.153	Myotis_lucifugus
ENSPTRG00000016955	-	99	82.270	ENSNGAG00000019833	Smn1	97	83.099	Nannospalax_galili
ENSPTRG00000016955	-	90	53.532	ENSNBRG00000023000	smn1	94	54.643	Neolamprologus_brichardi
ENSPTRG00000016955	-	100	98.901	ENSNLEG00000004454	-	100	98.901	Nomascus_leucogenys
ENSPTRG00000016955	-	80	60.606	ENSMEUG00000011393	-	99	62.069	Notamacropus_eugenii
ENSPTRG00000016955	-	89	80.469	ENSOPRG00000002015	-	100	80.859	Ochotona_princeps
ENSPTRG00000016955	-	99	79.094	ENSODEG00000015976	-	97	78.746	Octodon_degus
ENSPTRG00000016955	-	92	52.747	ENSONIG00000011799	smn1	95	53.901	Oreochromis_niloticus
ENSPTRG00000016955	-	78	90.698	ENSOANG00000001626	-	95	63.406	Ornithorhynchus_anatinus
ENSPTRG00000016955	-	99	83.448	ENSOCUG00000025183	-	96	79.225	Oryctolagus_cuniculus
ENSPTRG00000016955	-	94	88.406	ENSOCUG00000026649	-	97	80.822	Oryctolagus_cuniculus
ENSPTRG00000016955	-	99	82.034	ENSOCUG00000017097	-	99	82.034	Oryctolagus_cuniculus
ENSPTRG00000016955	-	60	60.127	ENSORLG00000010552	smn1	94	51.825	Oryzias_latipes
ENSPTRG00000016955	-	90	53.386	ENSORLG00020007936	smn1	93	54.878	Oryzias_latipes_hni
ENSPTRG00000016955	-	60	57.317	ENSORLG00015022425	smn1	54	60.127	Oryzias_latipes_hsok
ENSPTRG00000016955	-	92	47.143	ENSOMEG00000007824	smn1	94	52.143	Oryzias_melastigma
ENSPTRG00000016955	-	95	81.550	ENSOGAG00000031414	-	94	81.550	Otolemur_garnettii
ENSPTRG00000016955	-	93	81.588	ENSOARG00000005425	-	99	81.227	Ovis_aries
ENSPTRG00000016955	-	100	99.618	ENSPPAG00000036640	-	100	100.000	Pan_paniscus
ENSPTRG00000016955	-	99	88.462	ENSPPRG00000005575	-	97	89.085	Panthera_pardus
ENSPTRG00000016955	-	99	88.475	ENSPTIG00000007745	-	97	89.437	Panthera_tigris_altaica
ENSPTRG00000016955	-	100	92.308	ENSPANG00000000253	-	98	90.722	Papio_anubis
ENSPTRG00000016955	-	100	97.328	ENSPANG00000013601	-	100	97.328	Papio_anubis
ENSPTRG00000016955	-	77	91.892	ENSPKIG00000011096	smn1	93	53.942	Paramormyrops_kingsleyae
ENSPTRG00000016955	-	92	59.779	ENSPSIG00000014787	-	90	56.827	Pelodiscus_sinensis
ENSPTRG00000016955	-	92	48.175	ENSPMGG00000012285	smn1	95	49.630	Periophthalmus_magnuspinnatus
ENSPTRG00000016955	-	91	40.659	ENSPMAG00000005004	smn1	91	41.135	Petromyzon_marinus
ENSPTRG00000016955	-	86	84.746	ENSPCIG00000025764	-	97	68.641	Phascolarctos_cinereus
ENSPTRG00000016955	-	92	52.416	ENSPFOG00000007786	smn1	94	52.555	Poecilia_formosa
ENSPTRG00000016955	-	90	55.785	ENSPLAG00000012071	smn1	93	57.261	Poecilia_latipinna
ENSPTRG00000016955	-	90	55.372	ENSPMEG00000017085	smn1	93	56.846	Poecilia_mexicana
ENSPTRG00000016955	-	90	57.025	ENSPREG00000005824	smn1	93	57.261	Poecilia_reticulata
ENSPTRG00000016955	-	83	63.761	ENSPPYG00000019189	-	99	60.811	Pongo_abelii
ENSPTRG00000016955	-	92	97.794	ENSPPYG00000015533	-	97	97.794	Pongo_abelii
ENSPTRG00000016955	-	90	80.220	ENSPCAG00000004187	-	99	79.853	Procavia_capensis
ENSPTRG00000016955	-	85	91.525	ENSPCOG00000022307	-	90	85.784	Propithecus_coquereli
ENSPTRG00000016955	-	99	88.136	ENSPVAG00000005977	-	99	88.136	Pteropus_vampyrus
ENSPTRG00000016955	-	90	53.532	ENSPNYG00000014148	smn1	94	54.643	Pundamilia_nyererei
ENSPTRG00000016955	-	93	51.128	ENSPNAG00000014007	smn1	82	50.000	Pygocentrus_nattereri
ENSPTRG00000016955	-	99	81.319	ENSRNOG00000018067	Smn1	96	79.859	Rattus_norvegicus
ENSPTRG00000016955	-	93	90.110	ENSRBIG00000036775	-	95	81.625	Rhinopithecus_bieti
ENSPTRG00000016955	-	100	96.947	ENSRBIG00000037052	-	100	96.947	Rhinopithecus_bieti
ENSPTRG00000016955	-	100	82.117	ENSRROG00000031088	-	100	78.832	Rhinopithecus_roxellana
ENSPTRG00000016955	-	100	96.947	ENSRROG00000039399	-	100	96.947	Rhinopithecus_roxellana
ENSPTRG00000016955	-	100	94.505	ENSSBOG00000011665	-	100	94.505	Saimiri_boliviensis_boliviensis
ENSPTRG00000016955	-	86	86.400	ENSSBOG00000020112	-	87	87.200	Saimiri_boliviensis_boliviensis
ENSPTRG00000016955	-	99	66.216	ENSSHAG00000001499	-	96	68.382	Sarcophilus_harrisii
ENSPTRG00000016955	-	90	53.441	ENSSFOG00015015507	smn1	94	53.226	Scleropages_formosus
ENSPTRG00000016955	-	92	49.627	ENSSMAG00000007922	smn1	94	50.534	Scophthalmus_maximus
ENSPTRG00000016955	-	92	51.866	ENSSDUG00000018533	smn1	94	51.773	Seriola_dumerili
ENSPTRG00000016955	-	92	52.239	ENSSLDG00000021135	smn1	94	52.128	Seriola_lalandi_dorsalis
ENSPTRG00000016955	-	89	68.919	ENSSPUG00000000373	-	93	62.271	Sphenodon_punctatus
ENSPTRG00000016955	-	92	52.015	ENSSPAG00000004345	smn1	94	53.360	Stegastes_partitus
ENSPTRG00000016955	-	72	57.870	ENSSSCG00000033865	-	94	60.622	Sus_scrofa
ENSPTRG00000016955	-	99	88.475	ENSSSCG00000016970	-	99	88.136	Sus_scrofa
ENSPTRG00000016955	-	97	66.142	ENSSSCG00000029127	-	96	66.532	Sus_scrofa
ENSPTRG00000016955	-	98	58.099	ENSTGUG00000001548	-	96	59.851	Taeniopygia_guttata
ENSPTRG00000016955	-	91	48.507	ENSTRUG00000000736	smn	95	49.254	Takifugu_rubripes
ENSPTRG00000016955	-	93	47.794	ENSTNIG00000009892	smn1	95	47.163	Tetraodon_nigroviridis
ENSPTRG00000016955	-	70	86.957	ENSTBEG00000002399	-	89	86.957	Tupaia_belangeri
ENSPTRG00000016955	-	94	85.000	ENSTTRG00000005080	-	95	83.451	Tursiops_truncatus
ENSPTRG00000016955	-	70	88.043	ENSUAMG00000024947	-	67	88.043	Ursus_americanus
ENSPTRG00000016955	-	95	88.380	ENSUMAG00000007842	-	72	88.380	Ursus_maritimus
ENSPTRG00000016955	-	85	92.188	ENSVPAG00000009887	-	96	74.444	Vicugna_pacos
ENSPTRG00000016955	-	95	87.676	ENSVVUG00000006934	-	97	87.676	Vulpes_vulpes
ENSPTRG00000016955	-	90	65.432	ENSXETG00000018189	smn2	95	53.925	Xenopus_tropicalis
ENSPTRG00000016955	-	90	36.770	ENSXETG00000004912	-	78	59.016	Xenopus_tropicalis
ENSPTRG00000016955	-	91	55.738	ENSXMAG00000001521	smn1	94	55.967	Xiphophorus_maculatus