EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000017103 (Gene tree)
Gene ID: 461968
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 73467 bases
Position: chr5:98288166-98361632
Accession: 3950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000089667	ResIII	PF04851.15	3.7e-07	1	1
ENSPTRP00000029279	ResIII	PF04851.15	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000031693	-	6595	XM_009449401	ENSPTRP00000029279	1710 (aa)	XP_009447676	A0A2J8KJR8
ENSPTRT00000095971	-	5100	-	ENSPTRP00000089667	1699 (aa)	-	A0A2I3TKB2

Gene Model

Click here to download ENSPTRG00000017103's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000017103's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000017103	CHD1	96	57.159	ENSPTRG00000007478	CHD2	91	59.725

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000017103	CHD1	100	99.708	ENSG00000153922	CHD1	100	99.708	Homo_sapiens
ENSPTRG00000017103	CHD1	67	82.684	ENSAPOG00000005764	chd1	97	82.884	Acanthochromis_polyacanthus
ENSPTRG00000017103	CHD1	89	76.797	ENSAOCG00000023105	chd1	94	77.400	Amphiprion_ocellaris
ENSPTRG00000017103	CHD1	89	77.988	ENSAPEG00000013544	chd1	94	78.590	Amphiprion_percula
ENSPTRG00000017103	CHD1	90	77.299	ENSATEG00000010676	chd1	92	77.878	Anabas_testudineus
ENSPTRG00000017103	CHD1	71	82.319	ENSAMXG00000010843	chd1	91	83.502	Astyanax_mexicanus
ENSPTRG00000017103	CHD1	100	99.241	ENSCATG00000032035	CHD1	100	99.241	Cercocebus_atys
ENSPTRG00000017103	CHD1	100	99.182	ENSCSAG00000015339	CHD1	100	99.182	Chlorocebus_sabaeus
ENSPTRG00000017103	CHD1	100	97.312	ENSCANG00000036916	CHD1	100	97.312	Colobus_angolensis_palliatus
ENSPTRG00000017103	CHD1	100	95.794	ENSCGRG00001023943	Chd1	100	95.619	Cricetulus_griseus_chok1gshd
ENSPTRG00000017103	CHD1	100	95.794	ENSCGRG00000008652	Chd1	100	95.619	Cricetulus_griseus_crigri
ENSPTRG00000017103	CHD1	89	75.376	ENSCSEG00000009553	chd1	92	77.300	Cynoglossus_semilaevis
ENSPTRG00000017103	CHD1	92	89.263	ENSEASG00005016110	CHD1	99	98.066	Equus_asinus_asinus
ENSPTRG00000017103	CHD1	89	78.208	ENSELUG00000017677	chd1	93	77.986	Esox_lucius
ENSPTRG00000017103	CHD1	72	81.255	ENSFHEG00000021164	chd1	87	82.759	Fundulus_heteroclitus
ENSPTRG00000017103	CHD1	96	77.273	ENSGMOG00000001537	chd1	96	67.184	Gadus_morhua
ENSPTRG00000017103	CHD1	92	89.739	ENSGALG00000031327	-	96	89.930	Gallus_gallus
ENSPTRG00000017103	CHD1	83	81.694	ENSGAFG00000019880	chd1	90	82.844	Gambusia_affinis
ENSPTRG00000017103	CHD1	100	96.007	ENSGGOG00000011463	CHD1	100	96.007	Gorilla_gorilla
ENSPTRG00000017103	CHD1	88	78.912	ENSHCOG00000014222	chd1	91	79.544	Hippocampus_comes
ENSPTRG00000017103	CHD1	87	81.702	ENSIPUG00000001369	chd1	92	81.313	Ictalurus_punctatus
ENSPTRG00000017103	CHD1	63	95.323	ENSLAFG00000023183	CHD1	99	95.323	Loxodonta_africana
ENSPTRG00000017103	CHD1	100	99.241	ENSMFAG00000031226	CHD1	100	99.241	Macaca_fascicularis
ENSPTRG00000017103	CHD1	83	99.085	ENSMMUG00000014090	CHD1	99	99.085	Macaca_mulatta
ENSPTRG00000017103	CHD1	100	99.183	ENSMNEG00000045073	CHD1	100	99.183	Macaca_nemestrina
ENSPTRG00000017103	CHD1	100	95.059	ENSMLEG00000041096	CHD1	100	95.471	Mandrillus_leucophaeus
ENSPTRG00000017103	CHD1	73	80.484	ENSMZEG00005010957	chd1	94	80.560	Maylandia_zebra
ENSPTRG00000017103	CHD1	100	93.049	ENSMOCG00000019121	Chd1	100	92.932	Microtus_ochrogaster
ENSPTRG00000017103	CHD1	79	78.194	ENSMALG00000013317	chd1	95	78.146	Monopterus_albus
ENSPTRG00000017103	CHD1	100	94.279	MGP_CAROLIEiJ_G0021099	Chd1	99	96.944	Mus_caroli
ENSPTRG00000017103	CHD1	100	94.629	ENSMUSG00000023852	Chd1	99	97.130	Mus_musculus
ENSPTRG00000017103	CHD1	100	94.221	MGP_PahariEiJ_G0023414	Chd1	99	97.132	Mus_pahari
ENSPTRG00000017103	CHD1	89	75.945	ENSNBRG00000006860	chd1	91	77.607	Neolamprologus_brichardi
ENSPTRG00000017103	CHD1	100	97.133	ENSNLEG00000014493	CHD1	100	97.133	Nomascus_leucogenys
ENSPTRG00000017103	CHD1	100	92.915	ENSOANG00000004891	CHD1	100	94.312	Ornithorhynchus_anatinus
ENSPTRG00000017103	CHD1	60	76.794	ENSORLG00015016725	chd1	93	77.323	Oryzias_latipes_hsok
ENSPTRG00000017103	CHD1	100	98.593	ENSPPAG00000043367	CHD1	100	98.593	Pan_paniscus
ENSPTRG00000017103	CHD1	100	99.241	ENSPANG00000006387	CHD1	100	99.241	Papio_anubis
ENSPTRG00000017103	CHD1	89	78.172	ENSPKIG00000024719	chd1	92	78.937	Paramormyrops_kingsleyae
ENSPTRG00000017103	CHD1	73	81.315	ENSPMGG00000005785	chd1	93	81.395	Periophthalmus_magnuspinnatus
ENSPTRG00000017103	CHD1	100	95.619	ENSPEMG00000015939	Chd1	100	95.444	Peromyscus_maniculatus_bairdii
ENSPTRG00000017103	CHD1	50	76.533	ENSPLAG00000006473	-	85	77.765	Poecilia_latipinna
ENSPTRG00000017103	CHD1	97	74.190	ENSPREG00000004209	chd1	97	74.684	Poecilia_reticulata
ENSPTRG00000017103	CHD1	83	95.701	ENSRNOG00000014434	Chd1	99	95.490	Rattus_norvegicus
ENSPTRG00000017103	CHD1	100	96.242	ENSRBIG00000044325	CHD1	100	96.264	Rhinopithecus_bieti
ENSPTRG00000017103	CHD1	100	98.949	ENSRROG00000001726	CHD1	100	98.949	Rhinopithecus_roxellana
ENSPTRG00000017103	CHD1	72	81.684	ENSSFOG00015007161	chd1	90	82.358	Scleropages_formosus
ENSPTRG00000017103	CHD1	79	78.335	ENSSDUG00000018314	chd1	94	78.040	Seriola_dumerili
ENSPTRG00000017103	CHD1	52	83.713	ENSSLDG00000017244	chd1	84	86.019	Seriola_lalandi_dorsalis
ENSPTRG00000017103	CHD1	79	78.835	ENSSPAG00000007024	chd1	95	78.171	Stegastes_partitus
ENSPTRG00000017103	CHD1	86	97.970	ENSSSCG00000014177	CHD1	100	97.970	Sus_scrofa
ENSPTRG00000017103	CHD1	90	75.402	ENSTRUG00000010282	chd1	96	73.522	Takifugu_rubripes
ENSPTRG00000017103	CHD1	72	77.606	ENSTNIG00000007101	chd1	95	78.367	Tetraodon_nigroviridis
ENSPTRG00000017103	CHD1	97	72.645	ENSXCOG00000017184	chd1	97	72.242	Xiphophorus_couchianus
ENSPTRG00000017103	CHD1	77	77.736	ENSXMAG00000014538	chd1	95	78.621	Xiphophorus_maculatus