EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000017923 (Gene tree)
Gene ID: -
Gene Symbol: TRIM39
Alias: -
Full Name: tripartite motif containing 39
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 19794 bases
Position: chr6:30551952-30571745
Accession: 53445
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000030576	Rpr2	PF04032.16	6.1e-17	1	1
ENSPTRP00000030577	Rpr2	PF04032.16	2.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000057537	-	3795	XM_009450812	ENSPTRP00000050429	518 (aa)	XP_009449087	Q1XHU0
ENSPTRT00000033095	-	1185	XM_003311159	ENSPTRP00000030576	162 (aa)	XP_003311207	H2QSM0
ENSPTRT00000095404	-	3682	XM_009450814	ENSPTRP00000065972	488 (aa)	XP_009449089	K7BL16
ENSPTRT00000033096	-	1512	-	ENSPTRP00000030577	503 (aa)	-	H2QSM1

Gene Model

Click here to download ENSPTRG00000017923's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000017923's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000017923	TRIM39	100	98.211	ENSANAG00000032075	TRIM39	100	98.211	Aotus_nancymaae
ENSPTRG00000017923	TRIM39	100	97.614	ENSCJAG00000020681	TRIM39	100	97.614	Callithrix_jacchus
ENSPTRG00000017923	TRIM39	100	98.012	ENSCCAG00000036784	TRIM39	100	98.012	Cebus_capucinus
ENSPTRG00000017923	TRIM39	100	98.807	ENSCATG00000044044	TRIM39	100	98.807	Cercocebus_atys
ENSPTRG00000017923	TRIM39	100	99.801	ENSGGOG00000016403	TRIM39	100	99.801	Gorilla_gorilla
ENSPTRG00000017923	TRIM39	100	99.006	ENSMFAG00000046182	TRIM39	100	99.006	Macaca_fascicularis
ENSPTRG00000017923	TRIM39	100	99.006	ENSMMUG00000011682	RPP21	100	99.006	Macaca_mulatta
ENSPTRG00000017923	TRIM39	100	98.807	ENSMNEG00000034999	TRIM39	100	98.807	Macaca_nemestrina
ENSPTRG00000017923	TRIM39	100	99.006	ENSMLEG00000034263	TRIM39	100	99.006	Mandrillus_leucophaeus
ENSPTRG00000017923	TRIM39	100	99.602	ENSNLEG00000005026	TRIM39	100	99.602	Nomascus_leucogenys
ENSPTRG00000017923	TRIM39	100	100.000	ENSPPAG00000040674	TRIM39	100	100.000	Pan_paniscus
ENSPTRG00000017923	TRIM39	100	98.807	ENSPANG00000000655	TRIM39	100	98.807	Papio_anubis
ENSPTRG00000017923	TRIM39	100	99.205	ENSRBIG00000040889	TRIM39	100	99.205	Rhinopithecus_bieti
ENSPTRG00000017923	TRIM39	100	99.205	ENSRROG00000036496	TRIM39	100	99.205	Rhinopithecus_roxellana