EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000018762 (Gene tree)
Gene ID: 463111
Gene Symbol: PNLDC1
Alias: -
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 24179 bases
Position: chr6:164107305-164131483
Accession: 9595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000086881	CAF1	PF04857.20	2.3e-79	1	1
ENSPTRP00000032019	CAF1	PF04857.20	5.3e-72	1	1
ENSPTRP00000066581	CAF1	PF04857.20	4e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000091925	-	3295	XM_009452294	ENSPTRP00000086881	531 (aa)	XP_009450569	A0A2I3TDD2
ENSPTRT00000034638	-	2133	XM_009452295	ENSPTRP00000032019	520 (aa)	XP_009450570	H2QTZ9
ENSPTRT00000103641	-	1557	-	ENSPTRP00000066581	518 (aa)	-	A0A2I3RPE8

Gene Model

Click here to download ENSPTRG00000018762's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000018762's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000018762	PNLDC1	99	98.868	ENSG00000146453	PNLDC1	99	98.868	Homo_sapiens
ENSPTRG00000018762	PNLDC1	99	86.553	ENSAMEG00000015371	PNLDC1	99	86.553	Ailuropoda_melanoleuca
ENSPTRG00000018762	PNLDC1	99	57.471	ENSAPLG00000007014	PNLDC1	99	57.471	Anas_platyrhynchos
ENSPTRG00000018762	PNLDC1	83	30.258	ENSACAG00000004973	PARN	69	30.258	Anolis_carolinensis
ENSPTRG00000018762	PNLDC1	99	59.510	ENSACAG00000013667	PNLDC1	99	59.510	Anolis_carolinensis
ENSPTRG00000018762	PNLDC1	100	92.279	ENSANAG00000034713	PNLDC1	100	92.279	Aotus_nancymaae
ENSPTRG00000018762	PNLDC1	99	85.277	ENSBTAG00000015166	PNLDC1	99	85.468	Bos_taurus
ENSPTRG00000018762	PNLDC1	100	92.090	ENSCJAG00000011865	PNLDC1	100	92.090	Callithrix_jacchus
ENSPTRG00000018762	PNLDC1	100	87.382	ENSCAFG00000000740	PNLDC1	100	87.382	Canis_familiaris
ENSPTRG00000018762	PNLDC1	100	85.526	ENSCAFG00020017742	PNLDC1	100	85.526	Canis_lupus_dingo
ENSPTRG00000018762	PNLDC1	100	84.934	ENSCHIG00000003141	PNLDC1	100	84.934	Capra_hircus
ENSPTRG00000018762	PNLDC1	100	89.642	ENSTSYG00000005606	PNLDC1	100	89.642	Carlito_syrichta
ENSPTRG00000018762	PNLDC1	100	61.394	ENSCAPG00000011893	PNLDC1	100	61.394	Cavia_aperea
ENSPTRG00000018762	PNLDC1	100	78.571	ENSCPOG00000019565	PNLDC1	100	78.571	Cavia_porcellus
ENSPTRG00000018762	PNLDC1	100	93.409	ENSCCAG00000026232	PNLDC1	100	93.409	Cebus_capucinus
ENSPTRG00000018762	PNLDC1	100	95.480	ENSCATG00000033196	PNLDC1	100	95.480	Cercocebus_atys
ENSPTRG00000018762	PNLDC1	99	83.396	ENSCLAG00000003228	PNLDC1	99	83.396	Chinchilla_lanigera
ENSPTRG00000018762	PNLDC1	100	95.211	ENSCSAG00000012478	PNLDC1	100	95.211	Chlorocebus_sabaeus
ENSPTRG00000018762	PNLDC1	96	64.844	ENSCPBG00000004050	PNLDC1	100	64.844	Chrysemys_picta_bellii
ENSPTRG00000018762	PNLDC1	100	94.231	ENSCANG00000043076	PNLDC1	100	94.231	Colobus_angolensis_palliatus
ENSPTRG00000018762	PNLDC1	100	65.977	ENSCGRG00001011981	-	99	65.977	Cricetulus_griseus_chok1gshd
ENSPTRG00000018762	PNLDC1	100	80.979	ENSCGRG00001007470	-	99	80.979	Cricetulus_griseus_chok1gshd
ENSPTRG00000018762	PNLDC1	100	80.979	ENSCGRG00000010221	-	99	80.979	Cricetulus_griseus_crigri
ENSPTRG00000018762	PNLDC1	100	68.045	ENSCGRG00000003103	-	99	68.045	Cricetulus_griseus_crigri
ENSPTRG00000018762	PNLDC1	100	85.526	ENSDNOG00000013709	PNLDC1	100	85.526	Dasypus_novemcinctus
ENSPTRG00000018762	PNLDC1	100	79.213	ENSDORG00000011517	Pnldc1	99	86.581	Dipodomys_ordii
ENSPTRG00000018762	PNLDC1	93	76.543	ENSETEG00000007587	PNLDC1	98	76.543	Echinops_telfairi
ENSPTRG00000018762	PNLDC1	100	79.779	ENSEASG00005019029	PNLDC1	100	79.779	Equus_asinus_asinus
ENSPTRG00000018762	PNLDC1	100	87.947	ENSECAG00000012898	PNLDC1	100	87.947	Equus_caballus
ENSPTRG00000018762	PNLDC1	69	81.250	ENSEEUG00000005717	-	86	81.250	Erinaceus_europaeus
ENSPTRG00000018762	PNLDC1	100	87.194	ENSFCAG00000002848	PNLDC1	100	87.194	Felis_catus
ENSPTRG00000018762	PNLDC1	96	56.859	ENSFALG00000012081	PNLDC1	99	56.859	Ficedula_albicollis
ENSPTRG00000018762	PNLDC1	100	83.616	ENSFDAG00000021334	PNLDC1	100	83.616	Fukomys_damarensis
ENSPTRG00000018762	PNLDC1	79	58.670	ENSGALG00000011624	PNLDC1	82	58.670	Gallus_gallus
ENSPTRG00000018762	PNLDC1	99	65.825	ENSGAGG00000015276	PNLDC1	100	66.736	Gopherus_agassizii
ENSPTRG00000018762	PNLDC1	100	98.117	ENSGGOG00000014077	PNLDC1	100	98.117	Gorilla_gorilla
ENSPTRG00000018762	PNLDC1	100	84.369	ENSHGLG00000006889	PNLDC1	100	84.369	Heterocephalus_glaber_female
ENSPTRG00000018762	PNLDC1	100	84.369	ENSHGLG00100018275	PNLDC1	100	84.369	Heterocephalus_glaber_male
ENSPTRG00000018762	PNLDC1	99	88.091	ENSSTOG00000005595	PNLDC1	99	88.091	Ictidomys_tridecemlineatus
ENSPTRG00000018762	PNLDC1	100	79.849	ENSJJAG00000009937	Pnldc1	99	79.849	Jaculus_jaculus
ENSPTRG00000018762	PNLDC1	59	85.397	ENSLAFG00000030189	PNLDC1	92	85.397	Loxodonta_africana
ENSPTRG00000018762	PNLDC1	100	95.857	ENSMFAG00000041296	PNLDC1	100	95.857	Macaca_fascicularis
ENSPTRG00000018762	PNLDC1	100	95.857	ENSMMUG00000004181	PNLDC1	100	95.857	Macaca_mulatta
ENSPTRG00000018762	PNLDC1	100	95.669	ENSMNEG00000034271	PNLDC1	100	95.669	Macaca_nemestrina
ENSPTRG00000018762	PNLDC1	100	92.279	ENSMLEG00000044059	PNLDC1	100	92.279	Mandrillus_leucophaeus
ENSPTRG00000018762	PNLDC1	98	58.743	ENSMGAG00000012470	PNLDC1	97	58.743	Meleagris_gallopavo
ENSPTRG00000018762	PNLDC1	99	66.729	ENSMAUG00000012298	Pnldc1	100	66.729	Mesocricetus_auratus
ENSPTRG00000018762	PNLDC1	100	87.947	ENSMICG00000008021	PNLDC1	100	87.947	Microcebus_murinus
ENSPTRG00000018762	PNLDC1	100	85.553	ENSMOCG00000014287	Pnldc1	100	85.553	Microtus_ochrogaster
ENSPTRG00000018762	PNLDC1	99	74.624	ENSMODG00000007420	PNLDC1	99	74.624	Monodelphis_domestica
ENSPTRG00000018762	PNLDC1	100	85.311	MGP_CAROLIEiJ_G0021045	Pnldc1	100	85.311	Mus_caroli
ENSPTRG00000018762	PNLDC1	100	85.311	ENSMUSG00000073460	Pnldc1	100	88.571	Mus_musculus
ENSPTRG00000018762	PNLDC1	100	85.687	MGP_PahariEiJ_G0023361	Pnldc1	100	85.687	Mus_pahari
ENSPTRG00000018762	PNLDC1	100	85.122	MGP_SPRETEiJ_G0021975	Pnldc1	100	85.122	Mus_spretus
ENSPTRG00000018762	PNLDC1	99	86.226	ENSMPUG00000004920	PNLDC1	99	86.226	Mustela_putorius_furo
ENSPTRG00000018762	PNLDC1	100	86.064	ENSMLUG00000000747	PNLDC1	100	86.064	Myotis_lucifugus
ENSPTRG00000018762	PNLDC1	100	86.817	ENSNGAG00000017714	Pnldc1	99	86.817	Nannospalax_galili
ENSPTRG00000018762	PNLDC1	100	95.769	ENSNLEG00000011282	PNLDC1	100	95.769	Nomascus_leucogenys
ENSPTRG00000018762	PNLDC1	55	66.667	ENSMEUG00000014042	-	100	66.667	Notamacropus_eugenii
ENSPTRG00000018762	PNLDC1	62	63.750	ENSMEUG00000011926	-	64	65.385	Notamacropus_eugenii
ENSPTRG00000018762	PNLDC1	79	86.364	ENSOPRG00000003813	PNLDC1	79	86.364	Ochotona_princeps
ENSPTRG00000018762	PNLDC1	100	82.863	ENSODEG00000008047	PNLDC1	100	82.863	Octodon_degus
ENSPTRG00000018762	PNLDC1	99	56.792	ENSOANG00000012199	PNLDC1	99	58.868	Ornithorhynchus_anatinus
ENSPTRG00000018762	PNLDC1	100	85.876	ENSOCUG00000013867	PNLDC1	100	85.876	Oryctolagus_cuniculus
ENSPTRG00000018762	PNLDC1	99	89.036	ENSOGAG00000007331	PNLDC1	100	89.036	Otolemur_garnettii
ENSPTRG00000018762	PNLDC1	100	85.122	ENSOARG00000004585	PNLDC1	100	85.122	Ovis_aries
ENSPTRG00000018762	PNLDC1	100	100.000	ENSPPAG00000026651	PNLDC1	100	100.000	Pan_paniscus
ENSPTRG00000018762	PNLDC1	100	87.194	ENSPPRG00000012854	PNLDC1	100	87.194	Panthera_pardus
ENSPTRG00000018762	PNLDC1	97	85.149	ENSPTIG00000011501	PNLDC1	99	82.765	Panthera_tigris_altaica
ENSPTRG00000018762	PNLDC1	100	96.045	ENSPANG00000022009	PNLDC1	100	96.045	Papio_anubis
ENSPTRG00000018762	PNLDC1	62	55.385	ENSPSIG00000011419	PNLDC1	99	55.385	Pelodiscus_sinensis
ENSPTRG00000018762	PNLDC1	100	85.876	ENSPEMG00000016301	Pnldc1	99	85.876	Peromyscus_maniculatus_bairdii
ENSPTRG00000018762	PNLDC1	86	30.629	ENSPMAG00000003956	parn	90	30.832	Petromyzon_marinus
ENSPTRG00000018762	PNLDC1	84	75.566	ENSPCIG00000023412	PNLDC1	100	75.566	Phascolarctos_cinereus
ENSPTRG00000018762	PNLDC1	100	89.850	ENSPPYG00000017148	PNLDC1	100	89.850	Pongo_abelii
ENSPTRG00000018762	PNLDC1	99	76.515	ENSPCAG00000014169	PNLDC1	99	76.515	Procavia_capensis
ENSPTRG00000018762	PNLDC1	100	88.701	ENSPCOG00000025722	PNLDC1	100	88.701	Propithecus_coquereli
ENSPTRG00000018762	PNLDC1	70	30.100	ENSPVAG00000002547	PARN	62	30.100	Pteropus_vampyrus
ENSPTRG00000018762	PNLDC1	73	89.610	ENSPVAG00000005325	PNLDC1	73	89.610	Pteropus_vampyrus
ENSPTRG00000018762	PNLDC1	100	85.311	ENSRNOG00000023140	Pnldc1	100	85.625	Rattus_norvegicus
ENSPTRG00000018762	PNLDC1	100	95.480	ENSRBIG00000033806	PNLDC1	100	95.480	Rhinopithecus_bieti
ENSPTRG00000018762	PNLDC1	100	94.808	ENSRROG00000043919	PNLDC1	100	94.808	Rhinopithecus_roxellana
ENSPTRG00000018762	PNLDC1	100	93.409	ENSSBOG00000019135	PNLDC1	100	93.409	Saimiri_boliviensis_boliviensis
ENSPTRG00000018762	PNLDC1	99	75.145	ENSSHAG00000015192	PNLDC1	99	75.145	Sarcophilus_harrisii
ENSPTRG00000018762	PNLDC1	50	31.126	ENSSDUG00000013278	toe1	51	31.126	Seriola_dumerili
ENSPTRG00000018762	PNLDC1	50	31.126	ENSSLDG00000021979	toe1	51	31.126	Seriola_lalandi_dorsalis
ENSPTRG00000018762	PNLDC1	55	64.706	ENSSPUG00000004627	PNLDC1	99	65.625	Sphenodon_punctatus
ENSPTRG00000018762	PNLDC1	98	85.938	ENSSSCG00000004046	PNLDC1	99	85.938	Sus_scrofa
ENSPTRG00000018762	PNLDC1	93	57.938	ENSTGUG00000011418	PNLDC1	99	57.938	Taeniopygia_guttata
ENSPTRG00000018762	PNLDC1	99	76.893	ENSTBEG00000009131	PNLDC1	99	76.893	Tupaia_belangeri
ENSPTRG00000018762	PNLDC1	73	82.597	ENSTTRG00000010409	PNLDC1	72	82.597	Tursiops_truncatus
ENSPTRG00000018762	PNLDC1	99	74.630	ENSUAMG00000015783	PNLDC1	99	74.630	Ursus_americanus
ENSPTRG00000018762	PNLDC1	97	79.804	ENSUMAG00000011903	PNLDC1	99	79.804	Ursus_maritimus
ENSPTRG00000018762	PNLDC1	96	88.063	ENSVVUG00000006586	PNLDC1	99	87.269	Vulpes_vulpes