EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPTRG00000019057 (Gene tree)
Gene ID
463335
Gene Symbol
LSM5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Pan_troglodytes
Status
putative
Strand
Minus strand
Length
4854 bases
Position
chr7:31638582-31643435
Accession
4420
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPTRP00000032568LSMPF01423.224.2e-2011
ENSPTRP00000084190LSMPF01423.221.2e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPTRT00000106610-264-ENSPTRP0000008419087 (aa)-A0A2I3RPV2
ENSPTRT00000035229-2026XM_003950981ENSPTRP0000003256891 (aa)XP_003951030K7CM58
Gene Model
Click here to download ENSPTRG00000019057's gene model file
Pathways
Pathway IDPathway NameSource
ptr03018RNA degradationKEGG
ptr03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000019057's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPTRG00000019057LSM57632.877ENSPTRG00000043604-7732.877
ENSPTRG00000019057LSM5100100.000ENSPTRG00000049488-100100.000
ENSPTRG00000019057LSM58234.667ENSPTRG00000014650LSM37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPTRG00000019057LSM5100100.000ENSG00000106355LSM5100100.000Homo_sapiens
ENSPTRG00000019057LSM59095.122ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSPTRG00000019057LSM510095.604ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSPTRG00000019057LSM5100100.000ENSAMEG00000006700LSM5100100.000Ailuropoda_melanoleuca
ENSPTRG00000019057LSM59658.621ENSACIG00000019185lsm59858.621Amphilophus_citrinellus
ENSPTRG00000019057LSM510095.604ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSPTRG00000019057LSM510095.604ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSPTRG00000019057LSM56896.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSPTRG00000019057LSM59093.902ENSATEG00000020470lsm510059.341Anabas_testudineus
ENSPTRG00000019057LSM581100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSPTRG00000019057LSM562100.000ENSACAG00000009530LSM593100.000Anolis_carolinensis
ENSPTRG00000019057LSM59995.556ENSANAG00000024192-9495.556Aotus_nancymaae
ENSPTRG00000019057LSM510079.121ENSANAG00000037758-10079.121Aotus_nancymaae
ENSPTRG00000019057LSM510098.901ENSANAG00000034409-10098.901Aotus_nancymaae
ENSPTRG00000019057LSM59695.402ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSPTRG00000019057LSM510081.915ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSPTRG00000019057LSM5100100.000ENSBTAG00000002332LSM5100100.000Bos_taurus
ENSPTRG00000019057LSM55583.333ENSBTAG00000052014-6383.333Bos_taurus
ENSPTRG00000019057LSM510073.626WBGene00003079lsm-510073.626Caenorhabditis_elegans
ENSPTRG00000019057LSM5100100.000ENSCJAG00000047379LSM581100.000Callithrix_jacchus
ENSPTRG00000019057LSM59986.667ENSCJAG00000005678-10086.667Callithrix_jacchus
ENSPTRG00000019057LSM510098.901ENSCAFG00000019261-10098.901Canis_familiaris
ENSPTRG00000019057LSM56696.491ENSCAFG00000030781-6696.491Canis_familiaris
ENSPTRG00000019057LSM5100100.000ENSCAFG00020004946LSM5100100.000Canis_lupus_dingo
ENSPTRG00000019057LSM510097.802ENSCHIG00000004079-10097.802Capra_hircus
ENSPTRG00000019057LSM58175.676ENSCHIG00000021428-9572.727Capra_hircus
ENSPTRG00000019057LSM5100100.000ENSCHIG00000024539LSM5100100.000Capra_hircus
ENSPTRG00000019057LSM510086.813ENSTSYG00000028728-10086.813Carlito_syrichta
ENSPTRG00000019057LSM510081.319ENSTSYG00000026530-9181.319Carlito_syrichta
ENSPTRG00000019057LSM5100100.000ENSTSYG00000006449-100100.000Carlito_syrichta
ENSPTRG00000019057LSM510074.725ENSTSYG00000036637-10074.725Carlito_syrichta
ENSPTRG00000019057LSM58292.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSPTRG00000019057LSM5100100.000ENSCPOG00000036386LSM5100100.000Cavia_porcellus
ENSPTRG00000019057LSM5100100.000ENSCCAG00000037808-100100.000Cebus_capucinus
ENSPTRG00000019057LSM510098.901ENSCCAG00000000821-10098.901Cebus_capucinus
ENSPTRG00000019057LSM510081.319ENSCCAG00000032792-10081.319Cebus_capucinus
ENSPTRG00000019057LSM510097.802ENSCCAG00000032123-10097.802Cebus_capucinus
ENSPTRG00000019057LSM510068.132ENSCCAG00000037334-10068.132Cebus_capucinus
ENSPTRG00000019057LSM59988.889ENSCATG00000014790-9598.182Cercocebus_atys
ENSPTRG00000019057LSM5100100.000ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSPTRG00000019057LSM5100100.000ENSCLAG00000000202LSM5100100.000Chinchilla_lanigera
ENSPTRG00000019057LSM510083.516ENSCLAG00000005062-9083.516Chinchilla_lanigera
ENSPTRG00000019057LSM582100.000ENSCHOG00000005335LSM599100.000Choloepus_hoffmanni
ENSPTRG00000019057LSM5100100.000ENSCPBG00000013685LSM5100100.000Chrysemys_picta_bellii
ENSPTRG00000019057LSM59888.764ENSCING00000020625-9988.764Ciona_intestinalis
ENSPTRG00000019057LSM59588.372ENSCSAVG00000001439-9888.372Ciona_savignyi
ENSPTRG00000019057LSM5100100.000ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSPTRG00000019057LSM5100100.000ENSCGRG00001015461Lsm5100100.000Cricetulus_griseus_chok1gshd
ENSPTRG00000019057LSM582100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSPTRG00000019057LSM510059.341ENSCSEG00000015286lsm510059.341Cynoglossus_semilaevis
ENSPTRG00000019057LSM510094.505ENSCVAG00000004262lsm510094.505Cyprinodon_variegatus
ENSPTRG00000019057LSM510094.505ENSDARG00000071573lsm510096.774Danio_rerio
ENSPTRG00000019057LSM5100100.000ENSDNOG00000034958LSM5100100.000Dasypus_novemcinctus
ENSPTRG00000019057LSM59689.655ENSDNOG00000049495-9689.655Dasypus_novemcinctus
ENSPTRG00000019057LSM5100100.000ENSDORG00000009422Lsm5100100.000Dipodomys_ordii
ENSPTRG00000019057LSM59581.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSPTRG00000019057LSM59975.581ENSETEG00000001469-9975.581Echinops_telfairi
ENSPTRG00000019057LSM5100100.000ENSETEG00000018068LSM5100100.000Echinops_telfairi
ENSPTRG00000019057LSM510080.460ENSETEG00000010651-10079.121Echinops_telfairi
ENSPTRG00000019057LSM58181.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSPTRG00000019057LSM59867.416ENSETEG00000000777-9967.416Echinops_telfairi
ENSPTRG00000019057LSM510091.209ENSEBUG00000008540lsm510091.209Eptatretus_burgeri
ENSPTRG00000019057LSM5100100.000ENSEASG00005003500LSM5100100.000Equus_asinus_asinus
ENSPTRG00000019057LSM510094.253ENSECAG00000018445LSM510094.253Equus_caballus
ENSPTRG00000019057LSM56394.737ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSPTRG00000019057LSM510094.505ENSELUG00000007792lsm510094.505Esox_lucius
ENSPTRG00000019057LSM5100100.000ENSFCAG00000000230LSM5100100.000Felis_catus
ENSPTRG00000019057LSM584100.000ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSPTRG00000019057LSM510066.667ENSFDAG00000008685-10066.667Fukomys_damarensis
ENSPTRG00000019057LSM5100100.000ENSFDAG00000008767LSM5100100.000Fukomys_damarensis
ENSPTRG00000019057LSM59977.907ENSFHEG00000004011lsm59677.907Fundulus_heteroclitus
ENSPTRG00000019057LSM59994.444ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSPTRG00000019057LSM510098.901ENSGALG00000041625LSM510098.901Gallus_gallus
ENSPTRG00000019057LSM56896.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSPTRG00000019057LSM510095.604ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSPTRG00000019057LSM5100100.000ENSGAGG00000015593LSM5100100.000Gopherus_agassizii
ENSPTRG00000019057LSM5100100.000ENSGGOG00000043469LSM5100100.000Gorilla_gorilla
ENSPTRG00000019057LSM59695.402ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSPTRG00000019057LSM5100100.000ENSHGLG00000011765LSM5100100.000Heterocephalus_glaber_female
ENSPTRG00000019057LSM510096.703ENSHGLG00100015610LSM510096.703Heterocephalus_glaber_male
ENSPTRG00000019057LSM510059.341ENSHCOG00000008288lsm510059.341Hippocampus_comes
ENSPTRG00000019057LSM510093.407ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSPTRG00000019057LSM59282.558ENSSTOG00000033886-9782.558Ictidomys_tridecemlineatus
ENSPTRG00000019057LSM5100100.000ENSSTOG00000012662LSM5100100.000Ictidomys_tridecemlineatus
ENSPTRG00000019057LSM510097.802ENSJJAG00000012145-10097.802Jaculus_jaculus
ENSPTRG00000019057LSM510070.330ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSPTRG00000019057LSM58791.139ENSJJAG00000004475-10091.139Jaculus_jaculus
ENSPTRG00000019057LSM510094.505ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSPTRG00000019057LSM56090.385ENSLBEG00000017379lsm58590.385Labrus_bergylta
ENSPTRG00000019057LSM510086.813ENSLBEG00000009235LSM57086.813Labrus_bergylta
ENSPTRG00000019057LSM510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSPTRG00000019057LSM510094.505ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSPTRG00000019057LSM5100100.000ENSLAFG00000029579LSM5100100.000Loxodonta_africana
ENSPTRG00000019057LSM510071.429ENSLAFG00000027938-10071.429Loxodonta_africana
ENSPTRG00000019057LSM55397.917ENSMFAG00000031187-8197.917Macaca_fascicularis
ENSPTRG00000019057LSM5100100.000ENSMFAG00000038508LSM5100100.000Macaca_fascicularis
ENSPTRG00000019057LSM510096.703ENSMFAG00000030152-10096.703Macaca_fascicularis
ENSPTRG00000019057LSM59990.000ENSMMUG00000039822-10090.000Macaca_mulatta
ENSPTRG00000019057LSM510096.703ENSMMUG00000030131-10096.703Macaca_mulatta
ENSPTRG00000019057LSM560100.000ENSMMUG00000045129-81100.000Macaca_mulatta
ENSPTRG00000019057LSM5100100.000ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSPTRG00000019057LSM510096.703ENSMNEG00000037935-10096.703Macaca_nemestrina
ENSPTRG00000019057LSM5100100.000ENSMLEG00000024945LSM5100100.000Mandrillus_leucophaeus
ENSPTRG00000019057LSM59888.764ENSMLEG00000034037-10088.764Mandrillus_leucophaeus
ENSPTRG00000019057LSM510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSPTRG00000019057LSM59695.402ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSPTRG00000019057LSM510098.901ENSMGAG00000012117LSM510098.901Meleagris_gallopavo
ENSPTRG00000019057LSM5100100.000ENSMAUG00000012222Lsm5100100.000Mesocricetus_auratus
ENSPTRG00000019057LSM510098.901ENSMAUG00000008132-10098.901Mesocricetus_auratus
ENSPTRG00000019057LSM5100100.000ENSMICG00000005353LSM5100100.000Microcebus_murinus
ENSPTRG00000019057LSM59977.778ENSMICG00000033928-9677.778Microcebus_murinus
ENSPTRG00000019057LSM5100100.000ENSMOCG00000012018Lsm5100100.000Microtus_ochrogaster
ENSPTRG00000019057LSM58497.368ENSMMOG00000004026lsm58797.368Mola_mola
ENSPTRG00000019057LSM568100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSPTRG00000019057LSM56891.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSPTRG00000019057LSM5100100.000MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSPTRG00000019057LSM5100100.000ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSPTRG00000019057LSM5100100.000MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSPTRG00000019057LSM5100100.000MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSPTRG00000019057LSM5100100.000ENSMLUG00000017028LSM5100100.000Myotis_lucifugus
ENSPTRG00000019057LSM59978.889ENSNGAG00000022569-9678.889Nannospalax_galili
ENSPTRG00000019057LSM5100100.000ENSNGAG00000024142Lsm5100100.000Nannospalax_galili
ENSPTRG00000019057LSM510087.097ENSNGAG00000017707-10087.097Nannospalax_galili
ENSPTRG00000019057LSM55391.304ENSNBRG00000009964LSM59891.304Neolamprologus_brichardi
ENSPTRG00000019057LSM56396.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSPTRG00000019057LSM5100100.000ENSNLEG00000015268LSM5100100.000Nomascus_leucogenys
ENSPTRG00000019057LSM582100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSPTRG00000019057LSM5100100.000ENSODEG00000008258-100100.000Octodon_degus
ENSPTRG00000019057LSM5100100.000ENSODEG00000019072-100100.000Octodon_degus
ENSPTRG00000019057LSM58261.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSPTRG00000019057LSM5100100.000ENSOCUG00000029043LSM5100100.000Oryctolagus_cuniculus
ENSPTRG00000019057LSM510093.407ENSORLG00000027725lsm55893.407Oryzias_latipes
ENSPTRG00000019057LSM59690.805ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSPTRG00000019057LSM510093.407ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSPTRG00000019057LSM510092.308ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSPTRG00000019057LSM5100100.000ENSOGAG00000013892LSM5100100.000Otolemur_garnettii
ENSPTRG00000019057LSM5100100.000ENSOARG00000006944LSM5100100.000Ovis_aries
ENSPTRG00000019057LSM5100100.000ENSPPAG00000003697-100100.000Pan_paniscus
ENSPTRG00000019057LSM5100100.000ENSPPRG00000002550LSM5100100.000Panthera_pardus
ENSPTRG00000019057LSM5100100.000ENSPTIG00000015604LSM5100100.000Panthera_tigris_altaica
ENSPTRG00000019057LSM5100100.000ENSPANG00000032179-100100.000Papio_anubis
ENSPTRG00000019057LSM510095.604ENSPANG00000033477-10095.604Papio_anubis
ENSPTRG00000019057LSM59990.000ENSPANG00000032538-10090.000Papio_anubis
ENSPTRG00000019057LSM510094.505ENSPKIG00000011910lsm510094.505Paramormyrops_kingsleyae
ENSPTRG00000019057LSM581100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSPTRG00000019057LSM56896.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSPTRG00000019057LSM552100.000ENSPEMG00000019994-80100.000Peromyscus_maniculatus_bairdii
ENSPTRG00000019057LSM510072.527ENSPEMG00000022375-10072.527Peromyscus_maniculatus_bairdii
ENSPTRG00000019057LSM510094.505ENSPFOG00000001433lsm510094.505Poecilia_formosa
ENSPTRG00000019057LSM510094.505ENSPLAG00000009665lsm510094.505Poecilia_latipinna
ENSPTRG00000019057LSM510094.505ENSPMEG00000022265lsm510094.505Poecilia_mexicana
ENSPTRG00000019057LSM56896.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSPTRG00000019057LSM510096.703ENSPPYG00000017661LSM510096.703Pongo_abelii
ENSPTRG00000019057LSM589100.000ENSPCAG00000013740LSM5100100.000Procavia_capensis
ENSPTRG00000019057LSM5100100.000ENSPVAG00000009786LSM5100100.000Pteropus_vampyrus
ENSPTRG00000019057LSM59695.402ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSPTRG00000019057LSM510093.407ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSPTRG00000019057LSM5100100.000ENSRNOG00000042126Lsm5100100.000Rattus_norvegicus
ENSPTRG00000019057LSM510095.652ENSRNOG00000027305AABR07065089.110095.652Rattus_norvegicus
ENSPTRG00000019057LSM5100100.000ENSRBIG00000030714-100100.000Rhinopithecus_bieti
ENSPTRG00000019057LSM5100100.000ENSRBIG00000030340-100100.000Rhinopithecus_bieti
ENSPTRG00000019057LSM510098.901ENSRBIG00000024431-10098.901Rhinopithecus_bieti
ENSPTRG00000019057LSM5100100.000ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSPTRG00000019057LSM5100100.000ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSPTRG00000019057LSM5100100.000ENSRROG00000023884-100100.000Rhinopithecus_roxellana
ENSPTRG00000019057LSM5100100.000ENSRROG00000004655-100100.000Rhinopithecus_roxellana
ENSPTRG00000019057LSM58551.220YER146W-8851.220Saccharomyces_cerevisiae
ENSPTRG00000019057LSM510078.022ENSSBOG00000034794-10078.022Saimiri_boliviensis_boliviensis
ENSPTRG00000019057LSM5100100.000ENSSBOG00000012312LSM5100100.000Saimiri_boliviensis_boliviensis
ENSPTRG00000019057LSM510097.802ENSSBOG00000019124-10097.802Saimiri_boliviensis_boliviensis
ENSPTRG00000019057LSM510094.505ENSSFOG00015010099lsm510094.505Scleropages_formosus
ENSPTRG00000019057LSM510060.440ENSSMAG00000007895lsm510060.440Scophthalmus_maximus
ENSPTRG00000019057LSM56896.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSPTRG00000019057LSM510094.505ENSSLDG00000025242lsm510094.505Seriola_lalandi_dorsalis
ENSPTRG00000019057LSM58678.205ENSSLDG00000008014-9378.205Seriola_lalandi_dorsalis
ENSPTRG00000019057LSM510071.429ENSSARG00000003330LSM510071.429Sorex_araneus
ENSPTRG00000019057LSM510097.802ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSPTRG00000019057LSM510060.440ENSSPAG00000005435lsm510060.440Stegastes_partitus
ENSPTRG00000019057LSM5100100.000ENSSSCG00000026064-100100.000Sus_scrofa
ENSPTRG00000019057LSM57688.406ENSSSCG00000029661-9688.406Sus_scrofa
ENSPTRG00000019057LSM510096.703ENSTGUG00000017539LSM510096.703Taeniopygia_guttata
ENSPTRG00000019057LSM58687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSPTRG00000019057LSM59695.402ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSPTRG00000019057LSM5100100.000ENSTBEG00000004876LSM5100100.000Tupaia_belangeri
ENSPTRG00000019057LSM5100100.000ENSTTRG00000004237LSM5100100.000Tursiops_truncatus
ENSPTRG00000019057LSM57489.062ENSUAMG00000009786LSM58389.062Ursus_americanus
ENSPTRG00000019057LSM510098.901ENSUMAG00000002625LSM56598.901Ursus_maritimus
ENSPTRG00000019057LSM5100100.000ENSVPAG00000009985LSM5100100.000Vicugna_pacos
ENSPTRG00000019057LSM5100100.000ENSVVUG00000021311LSM5100100.000Vulpes_vulpes
ENSPTRG00000019057LSM59095.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSPTRG00000019057LSM56896.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSPTRG00000019057LSM510094.505ENSXMAG00000029988lsm510094.505Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us