EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000019132 (Gene tree)
Gene ID: 100609886
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 6685 bases
Position: chr7:105538194-105544878
Accession: 100609886
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000032677	RNA_pol_L_2	PF13656.6	5.2e-29	1	1
ENSPTRP00000079442	RNA_pol_L_2	PF13656.6	7.9e-29	1	1
ENSPTRP00000081997	RNA_pol_L_2	PF13656.6	1.2e-28	1	1
ENSPTRP00000063652	RNA_pol_L_2	PF13656.6	1.1e-17	1	1
ENSPTRP00000032677	RNA_pol_L	PF01193.24	5.7e-10	1	1
ENSPTRP00000079442	RNA_pol_L	PF01193.24	8.1e-10	1	1
ENSPTRP00000081997	RNA_pol_L	PF01193.24	1.2e-09	1	1
ENSPTRP00000063652	RNA_pol_L	PF01193.24	0.00084	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000035347	-	714	XM_003949226	ENSPTRP00000032677	117 (aa)	XP_003949275	K7C127
ENSPTRT00000099980	-	885	XM_009443883	ENSPTRP00000081997	159 (aa)	XP_009442158	A0A2I3SZI0
ENSPTRT00000107502	-	390	-	ENSPTRP00000063652	129 (aa)	-	A0A2I3RG90
ENSPTRT00000089478	-	420	-	ENSPTRP00000079442	139 (aa)	-	A0A2I3SR95

Gene Model

Click here to download ENSPTRG00000019132's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03020	RNA polymerase	KEGG
ptr05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000019132's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000019132	-	87	87.500	ENSPTRG00000052689	-	95	78.873
ENSPTRG00000019132	-	100	96.124	ENSPTRG00000022966	-	100	96.124
ENSPTRG00000019132	-	88	92.105	ENSPTRG00000028611	-	98	81.818
ENSPTRG00000019132	-	100	79.874	ENSPTRG00000050290	-	100	79.874
ENSPTRG00000019132	-	85	33.010	ENSPTRG00000005734	POLR1D	77	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000019132	-	100	92.126	ENSANAG00000020385	-	100	92.126	Aotus_nancymaae
ENSPTRG00000019132	-	100	100.000	ENSBTAG00000005446	POLR2J	100	100.000	Bos_taurus
ENSPTRG00000019132	-	100	100.000	ENSCAFG00020013154	-	100	100.000	Canis_lupus_dingo
ENSPTRG00000019132	-	100	100.000	ENSCHIG00000009008	-	100	100.000	Capra_hircus
ENSPTRG00000019132	-	96	91.964	ENSCAPG00000013625	-	96	91.964	Cavia_aperea
ENSPTRG00000019132	-	100	100.000	ENSCCAG00000029378	-	100	100.000	Cebus_capucinus
ENSPTRG00000019132	-	86	76.577	ENSCHOG00000008325	-	100	76.577	Choloepus_hoffmanni
ENSPTRG00000019132	-	85	99.000	ENSCPBG00000027774	-	84	99.000	Chrysemys_picta_bellii
ENSPTRG00000019132	-	100	100.000	ENSECAG00000022750	-	100	100.000	Equus_caballus
ENSPTRG00000019132	-	89	95.070	ENSGGOG00000038950	-	82	95.070	Gorilla_gorilla
ENSPTRG00000019132	-	87	92.857	ENSGGOG00000003934	-	90	93.694	Gorilla_gorilla
ENSPTRG00000019132	-	100	85.385	ENSGGOG00000043186	-	100	85.385	Gorilla_gorilla
ENSPTRG00000019132	-	54	92.063	ENSLACG00000022567	-	60	92.063	Latimeria_chalumnae
ENSPTRG00000019132	-	100	93.082	ENSMFAG00000039168	-	100	93.082	Macaca_fascicularis
ENSPTRG00000019132	-	100	100.000	ENSMLEG00000033262	-	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000019132	-	100	100.000	ENSMICG00000010323	-	100	100.000	Microcebus_murinus
ENSPTRG00000019132	-	100	80.342	ENSPANG00000015179	-	89	100.000	Papio_anubis
ENSPTRG00000019132	-	100	96.581	ENSPKIG00000013014	-	100	96.581	Paramormyrops_kingsleyae
ENSPTRG00000019132	-	92	99.074	ENSPCAG00000003269	-	88	81.761	Procavia_capensis
ENSPTRG00000019132	-	100	100.000	ENSRBIG00000042413	-	100	100.000	Rhinopithecus_bieti
ENSPTRG00000019132	-	100	94.340	ENSRROG00000035578	-	96	99.065	Rhinopithecus_roxellana
ENSPTRG00000019132	-	76	100.000	ENSTTRG00000014846	-	100	82.979	Tursiops_truncatus
ENSPTRG00000019132	-	91	73.832	ENSVPAG00000007077	-	89	60.377	Vicugna_pacos
ENSPTRG00000019132	-	100	100.000	ENSVVUG00000023727	-	100	100.000	Vulpes_vulpes