EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000019453 (Gene tree)
Gene ID: 463572
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 18537 bases
Position: chr7:102397226-102415762
Accession: 4320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000033281	zf-CCCH	PF00642.24	5.6e-20	1	2
ENSPTRP00000033281	zf-CCCH	PF00642.24	5.6e-20	2	2
ENSPTRP00000085617	zf-CCCH	PF00642.24	2.3e-15	1	2
ENSPTRP00000085617	zf-CCCH	PF00642.24	2.3e-15	2	2
ENSPTRP00000085617	zf-CCHC	PF00098.23	5.3e-06	1	1
ENSPTRP00000033281	zf-CCHC	PF00098.23	7.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000036004	-	1893	XM_001137776	ENSPTRP00000033281	269 (aa)	XP_001137776	H2QV04
ENSPTRT00000086765	-	636	-	ENSPTRP00000085617	211 (aa)	-	A0A2I3T8R1

Gene Model

Click here to download ENSPTRG00000019453's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03015	mRNA surveillance pathway	KEGG
ptr05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000019453's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000019453	CPSF4	64	64.740	ENSPTRG00000009598	CPSF4L	92	67.683

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000019453	CPSF4	100	99.628	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPTRG00000019453	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSPTRG00000019453	CPSF4	100	98.885	ENSAMEG00000006252	CPSF4	100	98.885	Ailuropoda_melanoleuca
ENSPTRG00000019453	CPSF4	100	78.810	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSPTRG00000019453	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSPTRG00000019453	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSPTRG00000019453	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSPTRG00000019453	CPSF4	100	93.680	ENSACAG00000012941	CPSF4	89	93.680	Anolis_carolinensis
ENSPTRG00000019453	CPSF4	100	99.628	ENSANAG00000021360	CPSF4	100	99.628	Aotus_nancymaae
ENSPTRG00000019453	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSPTRG00000019453	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSPTRG00000019453	CPSF4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSPTRG00000019453	CPSF4	100	99.628	ENSCJAG00000015826	CPSF4	100	99.628	Callithrix_jacchus
ENSPTRG00000019453	CPSF4	100	98.513	ENSCAFG00000015036	CPSF4	100	98.513	Canis_familiaris
ENSPTRG00000019453	CPSF4	100	92.193	ENSCAFG00020014462	CPSF4	100	92.193	Canis_lupus_dingo
ENSPTRG00000019453	CPSF4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSPTRG00000019453	CPSF4	100	87.793	ENSTSYG00000014604	-	100	87.793	Carlito_syrichta
ENSPTRG00000019453	CPSF4	85	88.950	ENSTSYG00000008195	-	100	88.950	Carlito_syrichta
ENSPTRG00000019453	CPSF4	100	98.578	ENSTSYG00000005712	-	100	98.578	Carlito_syrichta
ENSPTRG00000019453	CPSF4	81	98.624	ENSCAPG00000013881	CPSF4	87	98.624	Cavia_aperea
ENSPTRG00000019453	CPSF4	100	98.578	ENSCPOG00000001783	CPSF4	100	98.578	Cavia_porcellus
ENSPTRG00000019453	CPSF4	100	99.628	ENSCCAG00000028291	CPSF4	100	99.628	Cebus_capucinus
ENSPTRG00000019453	CPSF4	100	99.628	ENSCATG00000038440	CPSF4	100	99.628	Cercocebus_atys
ENSPTRG00000019453	CPSF4	100	98.885	ENSCLAG00000007050	CPSF4	100	98.885	Chinchilla_lanigera
ENSPTRG00000019453	CPSF4	100	99.628	ENSCSAG00000017795	CPSF4	100	99.628	Chlorocebus_sabaeus
ENSPTRG00000019453	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSPTRG00000019453	CPSF4	80	96.296	ENSCPBG00000020869	CPSF4	100	96.296	Chrysemys_picta_bellii
ENSPTRG00000019453	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSPTRG00000019453	CPSF4	96	53.546	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSPTRG00000019453	CPSF4	100	99.628	ENSCANG00000019384	CPSF4	100	99.628	Colobus_angolensis_palliatus
ENSPTRG00000019453	CPSF4	100	98.578	ENSCGRG00001024184	Cpsf4	100	98.578	Cricetulus_griseus_chok1gshd
ENSPTRG00000019453	CPSF4	100	98.885	ENSCGRG00000013892	Cpsf4	100	98.885	Cricetulus_griseus_crigri
ENSPTRG00000019453	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSPTRG00000019453	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSPTRG00000019453	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSPTRG00000019453	CPSF4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSPTRG00000019453	CPSF4	81	98.157	ENSDORG00000000742	Cpsf4	100	98.157	Dipodomys_ordii
ENSPTRG00000019453	CPSF4	100	54.110	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSPTRG00000019453	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSPTRG00000019453	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSPTRG00000019453	CPSF4	100	89.591	ENSEASG00005002487	CPSF4	100	89.591	Equus_asinus_asinus
ENSPTRG00000019453	CPSF4	100	98.885	ENSECAG00000007525	CPSF4	100	98.885	Equus_caballus
ENSPTRG00000019453	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSPTRG00000019453	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	82.847	Esox_lucius
ENSPTRG00000019453	CPSF4	100	98.885	ENSFCAG00000015070	CPSF4	100	98.885	Felis_catus
ENSPTRG00000019453	CPSF4	100	86.245	ENSFALG00000013799	CPSF4	100	86.245	Ficedula_albicollis
ENSPTRG00000019453	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSPTRG00000019453	CPSF4	90	97.942	ENSFDAG00000014092	CPSF4	100	97.942	Fukomys_damarensis
ENSPTRG00000019453	CPSF4	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSPTRG00000019453	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSPTRG00000019453	CPSF4	100	86.245	ENSGALG00000004714	CPSF4	100	85.130	Gallus_gallus
ENSPTRG00000019453	CPSF4	99	38.947	ENSGALG00000004441	-	98	32.174	Gallus_gallus
ENSPTRG00000019453	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSPTRG00000019453	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSPTRG00000019453	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSPTRG00000019453	CPSF4	100	96.283	ENSGAGG00000021835	CPSF4	100	96.283	Gopherus_agassizii
ENSPTRG00000019453	CPSF4	100	99.628	ENSGGOG00000015131	CPSF4	100	99.628	Gorilla_gorilla
ENSPTRG00000019453	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSPTRG00000019453	CPSF4	100	98.104	ENSHGLG00000017150	CPSF4	100	98.104	Heterocephalus_glaber_female
ENSPTRG00000019453	CPSF4	87	94.915	ENSHGLG00100009215	-	100	95.455	Heterocephalus_glaber_male
ENSPTRG00000019453	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSPTRG00000019453	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSPTRG00000019453	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSPTRG00000019453	CPSF4	100	98.885	ENSSTOG00000001688	CPSF4	100	98.885	Ictidomys_tridecemlineatus
ENSPTRG00000019453	CPSF4	100	98.885	ENSJJAG00000019426	Cpsf4	100	98.885	Jaculus_jaculus
ENSPTRG00000019453	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSPTRG00000019453	CPSF4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSPTRG00000019453	CPSF4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSPTRG00000019453	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSPTRG00000019453	CPSF4	100	98.513	ENSLAFG00000000159	CPSF4	100	98.513	Loxodonta_africana
ENSPTRG00000019453	CPSF4	100	99.628	ENSMFAG00000001462	CPSF4	100	99.628	Macaca_fascicularis
ENSPTRG00000019453	CPSF4	100	99.628	ENSMMUG00000019191	CPSF4	100	99.628	Macaca_mulatta
ENSPTRG00000019453	CPSF4	100	99.628	ENSMNEG00000032306	CPSF4	100	99.628	Macaca_nemestrina
ENSPTRG00000019453	CPSF4	100	99.628	ENSMLEG00000034721	CPSF4	100	99.628	Mandrillus_leucophaeus
ENSPTRG00000019453	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSPTRG00000019453	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSPTRG00000019453	CPSF4	87	84.681	ENSMGAG00000004235	CPSF4	100	83.404	Meleagris_gallopavo
ENSPTRG00000019453	CPSF4	100	98.885	ENSMAUG00000021253	Cpsf4	100	98.885	Mesocricetus_auratus
ENSPTRG00000019453	CPSF4	100	99.257	ENSMICG00000017429	CPSF4	100	99.257	Microcebus_murinus
ENSPTRG00000019453	CPSF4	100	98.885	ENSMOCG00000014901	Cpsf4	100	98.885	Microtus_ochrogaster
ENSPTRG00000019453	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSPTRG00000019453	CPSF4	100	98.141	ENSMODG00000001367	CPSF4	100	98.141	Monodelphis_domestica
ENSPTRG00000019453	CPSF4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSPTRG00000019453	CPSF4	100	98.885	MGP_CAROLIEiJ_G0028012	Cpsf4	100	98.885	Mus_caroli
ENSPTRG00000019453	CPSF4	100	98.885	ENSMUSG00000029625	Cpsf4	100	98.885	Mus_musculus
ENSPTRG00000019453	CPSF4	100	98.885	MGP_PahariEiJ_G0024581	Cpsf4	100	98.885	Mus_pahari
ENSPTRG00000019453	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSPTRG00000019453	CPSF4	100	98.885	ENSMPUG00000016508	CPSF4	100	98.885	Mustela_putorius_furo
ENSPTRG00000019453	CPSF4	87	87.234	ENSMLUG00000010980	CPSF4	100	87.234	Myotis_lucifugus
ENSPTRG00000019453	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSPTRG00000019453	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSPTRG00000019453	CPSF4	100	99.526	ENSNLEG00000011074	CPSF4	100	99.526	Nomascus_leucogenys
ENSPTRG00000019453	CPSF4	100	98.141	ENSMEUG00000006955	CPSF4	100	98.141	Notamacropus_eugenii
ENSPTRG00000019453	CPSF4	100	98.513	ENSOPRG00000013663	CPSF4	100	98.513	Ochotona_princeps
ENSPTRG00000019453	CPSF4	98	78.302	ENSODEG00000018283	-	89	78.302	Octodon_degus
ENSPTRG00000019453	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSPTRG00000019453	CPSF4	100	98.885	ENSODEG00000011181	-	100	98.885	Octodon_degus
ENSPTRG00000019453	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSPTRG00000019453	CPSF4	100	54.480	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSPTRG00000019453	CPSF4	87	96.596	ENSOANG00000007729	CPSF4	100	96.596	Ornithorhynchus_anatinus
ENSPTRG00000019453	CPSF4	100	98.513	ENSOCUG00000002437	CPSF4	70	98.513	Oryctolagus_cuniculus
ENSPTRG00000019453	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSPTRG00000019453	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSPTRG00000019453	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSPTRG00000019453	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSPTRG00000019453	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSPTRG00000019453	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSPTRG00000019453	CPSF4	100	100.000	ENSPPAG00000043355	CPSF4	100	100.000	Pan_paniscus
ENSPTRG00000019453	CPSF4	100	98.885	ENSPPRG00000003134	CPSF4	100	98.885	Panthera_pardus
ENSPTRG00000019453	CPSF4	90	98.760	ENSPTIG00000005604	CPSF4	90	98.760	Panthera_tigris_altaica
ENSPTRG00000019453	CPSF4	100	99.628	ENSPANG00000023123	CPSF4	100	99.628	Papio_anubis
ENSPTRG00000019453	CPSF4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSPTRG00000019453	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSPTRG00000019453	CPSF4	80	95.833	ENSPSIG00000011229	CPSF4	100	95.833	Pelodiscus_sinensis
ENSPTRG00000019453	CPSF4	100	73.978	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSPTRG00000019453	CPSF4	100	98.885	ENSPEMG00000004508	Cpsf4	100	98.885	Peromyscus_maniculatus_bairdii
ENSPTRG00000019453	CPSF4	100	98.141	ENSPCIG00000024776	CPSF4	100	98.141	Phascolarctos_cinereus
ENSPTRG00000019453	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSPTRG00000019453	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSPTRG00000019453	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSPTRG00000019453	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSPTRG00000019453	CPSF4	87	99.573	ENSPPYG00000017378	CPSF4	100	99.573	Pongo_abelii
ENSPTRG00000019453	CPSF4	100	97.770	ENSPCAG00000001892	CPSF4	100	97.770	Procavia_capensis
ENSPTRG00000019453	CPSF4	100	98.885	ENSPCOG00000012771	CPSF4	100	98.885	Propithecus_coquereli
ENSPTRG00000019453	CPSF4	100	92.193	ENSPVAG00000007531	CPSF4	100	92.193	Pteropus_vampyrus
ENSPTRG00000019453	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSPTRG00000019453	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSPTRG00000019453	CPSF4	100	98.578	ENSRNOG00000000985	Cpsf4	100	98.578	Rattus_norvegicus
ENSPTRG00000019453	CPSF4	87	99.573	ENSRBIG00000033886	CPSF4	100	99.573	Rhinopithecus_bieti
ENSPTRG00000019453	CPSF4	100	99.526	ENSRROG00000040431	CPSF4	100	99.526	Rhinopithecus_roxellana
ENSPTRG00000019453	CPSF4	100	99.628	ENSSBOG00000020493	CPSF4	100	99.628	Saimiri_boliviensis_boliviensis
ENSPTRG00000019453	CPSF4	100	98.141	ENSSHAG00000011533	CPSF4	100	98.141	Sarcophilus_harrisii
ENSPTRG00000019453	CPSF4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSPTRG00000019453	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSPTRG00000019453	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSPTRG00000019453	CPSF4	100	83.333	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSPTRG00000019453	CPSF4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSPTRG00000019453	CPSF4	96	59.615	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSPTRG00000019453	CPSF4	100	94.424	ENSSPUG00000003549	CPSF4	100	94.424	Sphenodon_punctatus
ENSPTRG00000019453	CPSF4	100	79.182	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSPTRG00000019453	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSPTRG00000019453	CPSF4	100	85.240	ENSTGUG00000007552	CPSF4	100	83.764	Taeniopygia_guttata
ENSPTRG00000019453	CPSF4	100	81.481	ENSTRUG00000024220	cpsf4	100	81.481	Takifugu_rubripes
ENSPTRG00000019453	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSPTRG00000019453	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSPTRG00000019453	CPSF4	85	100.000	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSPTRG00000019453	CPSF4	92	88.259	ENSUAMG00000008051	CPSF4	85	88.259	Ursus_americanus
ENSPTRG00000019453	CPSF4	100	89.219	ENSUMAG00000009474	CPSF4	100	89.219	Ursus_maritimus
ENSPTRG00000019453	CPSF4	100	89.219	ENSVVUG00000008824	CPSF4	100	89.219	Vulpes_vulpes
ENSPTRG00000019453	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSPTRG00000019453	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSPTRG00000019453	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSPTRG00000019453	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus