EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000020169 (Gene tree)
Gene ID: 746776
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 13391 bases
Position: chr8:37926058-37939448
Accession: 1168
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000053200	LSM	PF01423.22	3.3e-15	1	1
ENSPTRP00000076046	LSM	PF01423.22	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000037361	-	1148	XM_001170479	ENSPTRP00000053200	133 (aa)	XP_001170479	H2R9V1
ENSPTRT00000077602	-	135	-	ENSPTRP00000076046	44 (aa)	-	A0A2I3SGD8

Gene Model

Click here to download ENSPTRG00000020169's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000020169's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000020169	LSM1	50	34.328	ENSPTRG00000046596	-	89	34.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000020169	LSM1	100	100.000	ENSG00000175324	LSM1	100	100.000	Homo_sapiens
ENSPTRG00000020169	LSM1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSPTRG00000020169	LSM1	100	100.000	ENSAMEG00000011141	LSM1	100	100.000	Ailuropoda_melanoleuca
ENSPTRG00000020169	LSM1	89	89.744	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSPTRG00000020169	LSM1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSPTRG00000020169	LSM1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSPTRG00000020169	LSM1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSPTRG00000020169	LSM1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSPTRG00000020169	LSM1	100	100.000	ENSANAG00000027785	LSM1	100	100.000	Aotus_nancymaae
ENSPTRG00000020169	LSM1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSPTRG00000020169	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSPTRG00000020169	LSM1	100	99.248	ENSBTAG00000001612	LSM1	100	99.248	Bos_taurus
ENSPTRG00000020169	LSM1	84	72.973	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSPTRG00000020169	LSM1	100	100.000	ENSCJAG00000048015	LSM1	100	100.000	Callithrix_jacchus
ENSPTRG00000020169	LSM1	100	100.000	ENSCAFG00000006113	LSM1	100	100.000	Canis_familiaris
ENSPTRG00000020169	LSM1	100	100.000	ENSCAFG00020001822	LSM1	100	100.000	Canis_lupus_dingo
ENSPTRG00000020169	LSM1	100	100.000	ENSCHIG00000013194	LSM1	100	100.000	Capra_hircus
ENSPTRG00000020169	LSM1	100	100.000	ENSTSYG00000010394	LSM1	100	100.000	Carlito_syrichta
ENSPTRG00000020169	LSM1	100	100.000	ENSCPOG00000032671	LSM1	100	100.000	Cavia_porcellus
ENSPTRG00000020169	LSM1	100	100.000	ENSCCAG00000037171	LSM1	100	100.000	Cebus_capucinus
ENSPTRG00000020169	LSM1	100	100.000	ENSCATG00000020377	LSM1	100	100.000	Cercocebus_atys
ENSPTRG00000020169	LSM1	100	98.496	ENSCLAG00000001137	LSM1	100	98.496	Chinchilla_lanigera
ENSPTRG00000020169	LSM1	100	100.000	ENSCSAG00000015485	LSM1	100	100.000	Chlorocebus_sabaeus
ENSPTRG00000020169	LSM1	100	99.248	ENSCHOG00000006030	LSM1	100	99.248	Choloepus_hoffmanni
ENSPTRG00000020169	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSPTRG00000020169	LSM1	89	82.051	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSPTRG00000020169	LSM1	100	100.000	ENSCANG00000019173	LSM1	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000020169	LSM1	70	93.548	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSPTRG00000020169	LSM1	100	99.248	ENSCGRG00001024560	-	100	99.248	Cricetulus_griseus_chok1gshd
ENSPTRG00000020169	LSM1	100	99.248	ENSCGRG00000006554	-	100	99.248	Cricetulus_griseus_crigri
ENSPTRG00000020169	LSM1	70	93.548	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSPTRG00000020169	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSPTRG00000020169	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSPTRG00000020169	LSM1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSPTRG00000020169	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSPTRG00000020169	LSM1	100	93.985	ENSDNOG00000030989	-	100	93.985	Dasypus_novemcinctus
ENSPTRG00000020169	LSM1	100	100.000	ENSDNOG00000046387	-	100	100.000	Dasypus_novemcinctus
ENSPTRG00000020169	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSPTRG00000020169	LSM1	100	99.248	ENSDNOG00000032911	-	100	99.248	Dasypus_novemcinctus
ENSPTRG00000020169	LSM1	100	100.000	ENSDORG00000028172	Lsm1	100	100.000	Dipodomys_ordii
ENSPTRG00000020169	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSPTRG00000020169	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSPTRG00000020169	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSPTRG00000020169	LSM1	89	97.436	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSPTRG00000020169	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSPTRG00000020169	LSM1	89	97.436	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSPTRG00000020169	LSM1	100	100.000	ENSFCAG00000039335	LSM1	100	100.000	Felis_catus
ENSPTRG00000020169	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSPTRG00000020169	LSM1	100	100.000	ENSFDAG00000007658	LSM1	100	100.000	Fukomys_damarensis
ENSPTRG00000020169	LSM1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSPTRG00000020169	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSPTRG00000020169	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSPTRG00000020169	LSM1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSPTRG00000020169	LSM1	100	84.211	ENSGACG00000011763	lsm1	98	84.211	Gasterosteus_aculeatus
ENSPTRG00000020169	LSM1	100	95.489	ENSGAGG00000024065	LSM1	100	95.489	Gopherus_agassizii
ENSPTRG00000020169	LSM1	100	100.000	ENSGGOG00000022658	LSM1	100	100.000	Gorilla_gorilla
ENSPTRG00000020169	LSM1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSPTRG00000020169	LSM1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
ENSPTRG00000020169	LSM1	100	100.000	ENSHGLG00000005711	LSM1	100	100.000	Heterocephalus_glaber_female
ENSPTRG00000020169	LSM1	100	100.000	ENSHGLG00100017660	LSM1	100	100.000	Heterocephalus_glaber_male
ENSPTRG00000020169	LSM1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
ENSPTRG00000020169	LSM1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSPTRG00000020169	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSPTRG00000020169	LSM1	89	97.436	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSPTRG00000020169	LSM1	100	98.496	ENSJJAG00000014605	-	100	98.496	Jaculus_jaculus
ENSPTRG00000020169	LSM1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSPTRG00000020169	LSM1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSPTRG00000020169	LSM1	89	90.678	ENSLACG00000010947	LSM1	98	90.678	Latimeria_chalumnae
ENSPTRG00000020169	LSM1	100	94.737	ENSLOCG00000015149	lsm1	100	94.737	Lepisosteus_oculatus
ENSPTRG00000020169	LSM1	100	100.000	ENSLAFG00000003534	LSM1	100	100.000	Loxodonta_africana
ENSPTRG00000020169	LSM1	100	100.000	ENSMFAG00000032661	LSM1	100	100.000	Macaca_fascicularis
ENSPTRG00000020169	LSM1	100	100.000	ENSMLEG00000034535	LSM1	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000020169	LSM1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSPTRG00000020169	LSM1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSPTRG00000020169	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSPTRG00000020169	LSM1	100	100.000	ENSMICG00000030726	LSM1	100	100.000	Microcebus_murinus
ENSPTRG00000020169	LSM1	100	99.248	ENSMOCG00000022817	Lsm1	100	99.248	Microtus_ochrogaster
ENSPTRG00000020169	LSM1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSPTRG00000020169	LSM1	100	97.744	ENSMODG00000010732	-	100	97.744	Monodelphis_domestica
ENSPTRG00000020169	LSM1	89	89.744	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSPTRG00000020169	LSM1	100	97.744	MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	Mus_caroli
ENSPTRG00000020169	LSM1	100	97.744	ENSMUSG00000037296	Lsm1	100	97.744	Mus_musculus
ENSPTRG00000020169	LSM1	100	97.744	MGP_PahariEiJ_G0021400	Lsm1	100	97.744	Mus_pahari
ENSPTRG00000020169	LSM1	100	97.744	MGP_SPRETEiJ_G0032049	Lsm1	100	97.744	Mus_spretus
ENSPTRG00000020169	LSM1	100	99.248	ENSMPUG00000009883	LSM1	100	99.248	Mustela_putorius_furo
ENSPTRG00000020169	LSM1	100	99.248	ENSMLUG00000003734	LSM1	100	99.248	Myotis_lucifugus
ENSPTRG00000020169	LSM1	100	99.248	ENSNGAG00000003753	Lsm1	100	99.248	Nannospalax_galili
ENSPTRG00000020169	LSM1	89	89.744	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSPTRG00000020169	LSM1	100	100.000	ENSNLEG00000029390	LSM1	100	100.000	Nomascus_leucogenys
ENSPTRG00000020169	LSM1	100	97.744	ENSMEUG00000014077	LSM1	100	97.744	Notamacropus_eugenii
ENSPTRG00000020169	LSM1	88	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSPTRG00000020169	LSM1	100	100.000	ENSODEG00000004834	LSM1	100	100.000	Octodon_degus
ENSPTRG00000020169	LSM1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSPTRG00000020169	LSM1	100	96.992	ENSOANG00000003256	LSM1	100	96.992	Ornithorhynchus_anatinus
ENSPTRG00000020169	LSM1	100	100.000	ENSOCUG00000015399	LSM1	100	100.000	Oryctolagus_cuniculus
ENSPTRG00000020169	LSM1	100	85.714	ENSORLG00000030288	lsm1	100	85.714	Oryzias_latipes
ENSPTRG00000020169	LSM1	100	85.714	ENSORLG00020003941	lsm1	100	85.714	Oryzias_latipes_hni
ENSPTRG00000020169	LSM1	100	84.211	ENSORLG00020006213	-	86	84.211	Oryzias_latipes_hni
ENSPTRG00000020169	LSM1	100	85.714	ENSORLG00015018350	lsm1	100	85.714	Oryzias_latipes_hsok
ENSPTRG00000020169	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSPTRG00000020169	LSM1	100	100.000	ENSOGAG00000015161	LSM1	100	100.000	Otolemur_garnettii
ENSPTRG00000020169	LSM1	100	100.000	ENSOARG00000001317	LSM1	100	100.000	Ovis_aries
ENSPTRG00000020169	LSM1	100	100.000	ENSPPAG00000032279	LSM1	100	100.000	Pan_paniscus
ENSPTRG00000020169	LSM1	100	100.000	ENSPPRG00000014172	-	100	100.000	Panthera_pardus
ENSPTRG00000020169	LSM1	100	100.000	ENSPTIG00000010289	LSM1	100	100.000	Panthera_tigris_altaica
ENSPTRG00000020169	LSM1	100	100.000	ENSPANG00000008814	LSM1	100	100.000	Papio_anubis
ENSPTRG00000020169	LSM1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSPTRG00000020169	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSPTRG00000020169	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSPTRG00000020169	LSM1	89	89.744	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSPTRG00000020169	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSPTRG00000020169	LSM1	100	96.241	ENSPCIG00000008880	LSM1	100	96.241	Phascolarctos_cinereus
ENSPTRG00000020169	LSM1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSPTRG00000020169	LSM1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSPTRG00000020169	LSM1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSPTRG00000020169	LSM1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSPTRG00000020169	LSM1	100	100.000	ENSPPYG00000018521	LSM1	100	100.000	Pongo_abelii
ENSPTRG00000020169	LSM1	100	100.000	ENSPCOG00000020901	-	100	100.000	Propithecus_coquereli
ENSPTRG00000020169	LSM1	100	100.000	ENSPVAG00000006016	LSM1	100	100.000	Pteropus_vampyrus
ENSPTRG00000020169	LSM1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSPTRG00000020169	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSPTRG00000020169	LSM1	100	97.744	ENSRNOG00000015375	Lsm1	100	97.744	Rattus_norvegicus
ENSPTRG00000020169	LSM1	100	100.000	ENSRBIG00000027449	LSM1	100	100.000	Rhinopithecus_bieti
ENSPTRG00000020169	LSM1	100	100.000	ENSRROG00000036074	LSM1	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000020169	LSM1	100	97.744	ENSSHAG00000017260	LSM1	100	97.744	Sarcophilus_harrisii
ENSPTRG00000020169	LSM1	100	91.729	ENSSFOG00015019528	lsm1	100	91.729	Scleropages_formosus
ENSPTRG00000020169	LSM1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSPTRG00000020169	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSPTRG00000020169	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSPTRG00000020169	LSM1	100	95.489	ENSSPUG00000014878	LSM1	100	95.489	Sphenodon_punctatus
ENSPTRG00000020169	LSM1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSPTRG00000020169	LSM1	100	98.496	ENSSSCG00000039058	LSM1	100	98.496	Sus_scrofa
ENSPTRG00000020169	LSM1	100	94.737	ENSTGUG00000004793	LSM1	100	94.737	Taeniopygia_guttata
ENSPTRG00000020169	LSM1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSPTRG00000020169	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSPTRG00000020169	LSM1	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSPTRG00000020169	LSM1	100	100.000	ENSTTRG00000004482	LSM1	100	100.000	Tursiops_truncatus
ENSPTRG00000020169	LSM1	100	100.000	ENSUAMG00000004103	LSM1	100	100.000	Ursus_americanus
ENSPTRG00000020169	LSM1	100	100.000	ENSUMAG00000009132	LSM1	100	100.000	Ursus_maritimus
ENSPTRG00000020169	LSM1	89	94.872	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSPTRG00000020169	LSM1	100	100.000	ENSVVUG00000020191	LSM1	100	100.000	Vulpes_vulpes
ENSPTRG00000020169	LSM1	89	61.538	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSPTRG00000020169	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSPTRG00000020169	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSPTRG00000020169	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus