EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000020427 (Gene tree)
Gene ID: 100614373
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 108935 bases
Position: chr8:96030594-96139528
Accession: 472821
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000069323	ResIII	PF04851.15	2.1e-11	1	1
ENSPTRP00000034934	ResIII	PF04851.15	3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000109448	-	5404	XM_009455664	ENSPTRP00000079604	117 (aa)	XP_009453939	A0A2I3SRL7
ENSPTRT00000093654	-	6393	XM_003951301	ENSPTRP00000082522	299 (aa)	XP_003951350	K7DPQ4
ENSPTRT00000037798	-	3078	XM_001142757	ENSPTRP00000034934	910 (aa)	XP_001142757	H2QWF8
ENSPTRT00000097601	-	3095	XM_009455663	ENSPTRP00000069323	726 (aa)	XP_009453938	A0A2I3RX83

Gene Model

Click here to download ENSPTRG00000020427's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000020427's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000020427	-	59	41.259	ENSPTRG00000022047	ATRX	55	31.949
ENSPTRG00000020427	-	69	31.456	ENSPTRG00000001220	CHD1L	50	31.456
ENSPTRG00000020427	-	89	44.361	ENSPTRG00000000689	RAD54L	84	44.444
ENSPTRG00000020427	-	74	31.894	ENSPTRG00000048689	ERCC6L2	82	31.894
ENSPTRG00000020427	-	68	33.017	ENSPTRG00000023126	SMARCAD1	84	33.017
ENSPTRG00000020427	-	67	33.636	ENSPTRG00000002778	HELLS	67	33.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000020427	-	100	99.725	ENSG00000197275	RAD54B	100	99.560	Homo_sapiens
ENSPTRG00000020427	-	100	99.725	ENSG00000265817	FSBP	100	99.725	Homo_sapiens
ENSPTRG00000020427	-	99	90.483	ENSAMEG00000005834	-	99	87.473	Ailuropoda_melanoleuca
ENSPTRG00000020427	-	99	58.470	ENSACIG00000013005	rad54b	99	55.131	Amphilophus_citrinellus
ENSPTRG00000020427	-	99	58.992	ENSAOCG00000008523	rad54b	99	54.749	Amphiprion_ocellaris
ENSPTRG00000020427	-	99	57.787	ENSAPEG00000001673	rad54b	99	54.694	Amphiprion_percula
ENSPTRG00000020427	-	99	57.766	ENSATEG00000001527	rad54b	99	53.980	Anabas_testudineus
ENSPTRG00000020427	-	99	75.519	ENSAPLG00000014366	-	99	69.617	Anas_platyrhynchos
ENSPTRG00000020427	-	100	70.564	ENSACAG00000003671	-	99	70.980	Anolis_carolinensis
ENSPTRG00000020427	-	89	94.915	ENSANAG00000019528	-	100	94.915	Aotus_nancymaae
ENSPTRG00000020427	-	99	58.060	ENSACLG00000007826	rad54b	99	54.148	Astatotilapia_calliptera
ENSPTRG00000020427	-	99	57.163	ENSAMXG00000039985	rad54b	97	56.618	Astyanax_mexicanus
ENSPTRG00000020427	-	99	88.552	ENSBTAG00000000632	RAD54B	99	85.589	Bos_taurus
ENSPTRG00000020427	-	75	40.253	WBGene00013792	Y116A8C.13	98	33.256	Caenorhabditis_elegans
ENSPTRG00000020427	-	100	96.419	ENSCJAG00000000080	-	100	96.419	Callithrix_jacchus
ENSPTRG00000020427	-	99	88.828	ENSCAFG00000009179	RAD54B	99	85.165	Canis_familiaris
ENSPTRG00000020427	-	99	88.690	ENSCAFG00020012084	-	99	85.055	Canis_lupus_dingo
ENSPTRG00000020427	-	99	88.138	ENSCHIG00000008230	-	99	85.039	Capra_hircus
ENSPTRG00000020427	-	99	91.172	ENSTSYG00000013234	-	99	89.769	Carlito_syrichta
ENSPTRG00000020427	-	99	88.674	ENSCPOG00000011643	-	99	84.802	Cavia_porcellus
ENSPTRG00000020427	-	100	96.281	ENSCCAG00000011754	-	100	96.281	Cebus_capucinus
ENSPTRG00000020427	-	100	98.485	ENSCATG00000030661	-	100	98.485	Cercocebus_atys
ENSPTRG00000020427	-	100	88.567	ENSCLAG00000010476	-	100	84.852	Chinchilla_lanigera
ENSPTRG00000020427	-	100	98.209	ENSCSAG00000012712	-	100	97.143	Chlorocebus_sabaeus
ENSPTRG00000020427	-	100	76.099	ENSCPBG00000003204	-	99	71.260	Chrysemys_picta_bellii
ENSPTRG00000020427	-	100	98.072	ENSCANG00000017939	-	100	98.072	Colobus_angolensis_palliatus
ENSPTRG00000020427	-	99	83.978	ENSCGRG00001020184	Rad54b	99	79.758	Cricetulus_griseus_chok1gshd
ENSPTRG00000020427	-	99	82.597	ENSCGRG00000016752	Rad54b	99	78.328	Cricetulus_griseus_crigri
ENSPTRG00000020427	-	99	57.123	ENSCSEG00000001601	rad54b	99	57.002	Cynoglossus_semilaevis
ENSPTRG00000020427	-	99	59.973	ENSCVAG00000009200	rad54b	99	55.991	Cyprinodon_variegatus
ENSPTRG00000020427	-	99	57.844	ENSDARG00000092134	rad54b	99	60.462	Danio_rerio
ENSPTRG00000020427	-	99	88.187	ENSDNOG00000015535	-	99	84.995	Dasypus_novemcinctus
ENSPTRG00000020427	-	99	89.227	ENSDORG00000002492	Rad54b	99	84.945	Dipodomys_ordii
ENSPTRG00000020427	-	83	87.748	ENSETEG00000010605	-	100	82.383	Echinops_telfairi
ENSPTRG00000020427	-	100	49.328	ENSEBUG00000009104	rad54b	99	46.738	Eptatretus_burgeri
ENSPTRG00000020427	-	99	88.138	ENSEASG00005004021	-	99	86.636	Equus_asinus_asinus
ENSPTRG00000020427	-	99	88.552	ENSECAG00000021949	-	99	87.253	Equus_caballus
ENSPTRG00000020427	-	88	81.761	ENSEEUG00000008056	-	83	81.761	Erinaceus_europaeus
ENSPTRG00000020427	-	99	58.904	ENSELUG00000009287	rad54b	99	53.781	Esox_lucius
ENSPTRG00000020427	-	99	90.470	ENSFCAG00000015513	-	99	90.470	Felis_catus
ENSPTRG00000020427	-	99	75.104	ENSFALG00000005467	-	99	68.913	Ficedula_albicollis
ENSPTRG00000020427	-	98	88.983	ENSFDAG00000020541	-	100	85.919	Fukomys_damarensis
ENSPTRG00000020427	-	99	57.337	ENSFHEG00000014382	rad54b	90	56.815	Fundulus_heteroclitus
ENSPTRG00000020427	-	99	55.345	ENSGMOG00000014774	rad54b	98	55.890	Gadus_morhua
ENSPTRG00000020427	-	100	74.038	ENSGALG00000043597	RAD54B	99	68.478	Gallus_gallus
ENSPTRG00000020427	-	99	58.333	ENSGAFG00000007901	rad54b	99	54.476	Gambusia_affinis
ENSPTRG00000020427	-	99	58.401	ENSGACG00000009128	rad54b	99	54.839	Gasterosteus_aculeatus
ENSPTRG00000020427	-	100	75.824	ENSGAGG00000018747	-	99	70.947	Gopherus_agassizii
ENSPTRG00000020427	-	99	99.724	ENSGGOG00000023516	-	99	99.010	Gorilla_gorilla
ENSPTRG00000020427	-	99	58.254	ENSHBUG00000016017	rad54b	99	53.469	Haplochromis_burtoni
ENSPTRG00000020427	-	99	87.397	ENSHGLG00000008263	RAD54B	99	84.590	Heterocephalus_glaber_female
ENSPTRG00000020427	-	99	86.277	ENSHGLG00100008108	-	99	83.822	Heterocephalus_glaber_male
ENSPTRG00000020427	-	99	56.207	ENSHCOG00000004764	rad54b	98	55.364	Hippocampus_comes
ENSPTRG00000020427	-	99	57.708	ENSIPUG00000018531	rad54b	99	52.411	Ictalurus_punctatus
ENSPTRG00000020427	-	99	88.611	ENSSTOG00000010791	-	99	85.083	Ictidomys_tridecemlineatus
ENSPTRG00000020427	-	99	86.326	ENSJJAG00000010314	Rad54b	99	82.288	Jaculus_jaculus
ENSPTRG00000020427	-	99	56.908	ENSKMAG00000004744	rad54b	99	52.999	Kryptolebias_marmoratus
ENSPTRG00000020427	-	99	69.444	ENSLACG00000000859	-	100	69.705	Latimeria_chalumnae
ENSPTRG00000020427	-	99	63.499	ENSLOCG00000010100	rad54b	96	62.515	Lepisosteus_oculatus
ENSPTRG00000020427	-	100	88.843	ENSLAFG00000015315	-	100	85.767	Loxodonta_africana
ENSPTRG00000020427	-	100	98.209	ENSMFAG00000031629	-	100	98.209	Macaca_fascicularis
ENSPTRG00000020427	-	100	98.209	ENSMMUG00000005659	-	100	97.473	Macaca_mulatta
ENSPTRG00000020427	-	100	98.209	ENSMNEG00000016408	-	100	97.473	Macaca_nemestrina
ENSPTRG00000020427	-	100	98.623	ENSMLEG00000006946	-	100	97.692	Mandrillus_leucophaeus
ENSPTRG00000020427	-	99	58.457	ENSMAMG00000012269	rad54b	99	55.184	Mastacembelus_armatus
ENSPTRG00000020427	-	99	58.254	ENSMZEG00005005281	rad54b	95	58.564	Maylandia_zebra
ENSPTRG00000020427	-	100	73.901	ENSMGAG00000012024	-	99	68.387	Meleagris_gallopavo
ENSPTRG00000020427	-	99	83.702	ENSMAUG00000013586	Rad54b	99	79.318	Mesocricetus_auratus
ENSPTRG00000020427	-	99	91.034	ENSMICG00000000754	-	99	84.818	Microcebus_murinus
ENSPTRG00000020427	-	99	81.517	ENSMOCG00000020035	Rad54b	99	77.473	Microtus_ochrogaster
ENSPTRG00000020427	-	99	57.671	ENSMMOG00000003394	rad54b	99	53.913	Mola_mola
ENSPTRG00000020427	-	99	79.530	ENSMODG00000007343	-	99	77.210	Monodelphis_domestica
ENSPTRG00000020427	-	89	58.915	ENSMALG00000001520	rad54b	99	58.915	Monopterus_albus
ENSPTRG00000020427	-	99	83.149	MGP_CAROLIEiJ_G0025810	Rad54b	99	78.438	Mus_caroli
ENSPTRG00000020427	-	99	82.849	ENSMUSG00000078773	Rad54b	99	78.194	Mus_musculus
ENSPTRG00000020427	-	99	83.679	MGP_PahariEiJ_G0023933	Rad54b	99	78.634	Mus_pahari
ENSPTRG00000020427	-	99	83.978	MGP_SPRETEiJ_G0026758	Rad54b	99	79.098	Mus_spretus
ENSPTRG00000020427	-	99	88.828	ENSMPUG00000008878	-	99	87.886	Mustela_putorius_furo
ENSPTRG00000020427	-	100	89.118	ENSMLUG00000008953	-	100	84.759	Myotis_lucifugus
ENSPTRG00000020427	-	99	87.380	ENSNGAG00000017537	Rad54b	99	83.260	Nannospalax_galili
ENSPTRG00000020427	-	99	58.276	ENSNBRG00000013394	rad54b	99	54.476	Neolamprologus_brichardi
ENSPTRG00000020427	-	100	99.174	ENSNLEG00000003062	-	99	99.174	Nomascus_leucogenys
ENSPTRG00000020427	-	78	79.193	ENSMEUG00000012426	-	82	73.361	Notamacropus_eugenii
ENSPTRG00000020427	-	99	87.293	ENSODEG00000019564	-	99	84.048	Octodon_degus
ENSPTRG00000020427	-	93	88.791	ENSODEG00000002650	-	95	87.037	Octodon_degus
ENSPTRG00000020427	-	99	58.413	ENSONIG00000006067	rad54b	99	54.703	Oreochromis_niloticus
ENSPTRG00000020427	-	99	77.793	ENSOANG00000011348	-	99	77.630	Ornithorhynchus_anatinus
ENSPTRG00000020427	-	99	90.207	ENSOCUG00000016478	-	99	85.604	Oryctolagus_cuniculus
ENSPTRG00000020427	-	99	59.673	ENSORLG00000008918	rad54b	99	61.824	Oryzias_latipes
ENSPTRG00000020427	-	89	61.978	ENSORLG00020012171	rad54b	99	61.978	Oryzias_latipes_hni
ENSPTRG00000020427	-	99	59.244	ENSORLG00015018536	rad54b	99	54.316	Oryzias_latipes_hsok
ENSPTRG00000020427	-	99	58.960	ENSOMEG00000004345	rad54b	99	59.097	Oryzias_melastigma
ENSPTRG00000020427	-	99	89.931	ENSOGAG00000007854	-	99	87.363	Otolemur_garnettii
ENSPTRG00000020427	-	99	87.862	ENSOARG00000007691	-	99	87.423	Ovis_aries
ENSPTRG00000020427	-	100	98.022	ENSPPAG00000029572	-	100	98.022	Pan_paniscus
ENSPTRG00000020427	-	99	90.608	ENSPPRG00000007571	-	99	90.608	Panthera_pardus
ENSPTRG00000020427	-	99	90.608	ENSPTIG00000012670	-	99	90.608	Panthera_tigris_altaica
ENSPTRG00000020427	-	100	98.623	ENSPANG00000019566	-	100	97.802	Papio_anubis
ENSPTRG00000020427	-	99	62.881	ENSPKIG00000014974	rad54b	99	58.170	Paramormyrops_kingsleyae
ENSPTRG00000020427	-	100	73.901	ENSPSIG00000002383	-	98	73.913	Pelodiscus_sinensis
ENSPTRG00000020427	-	99	83.287	ENSPEMG00000012133	Rad54b	99	79.648	Peromyscus_maniculatus_bairdii
ENSPTRG00000020427	-	100	58.209	ENSPMAG00000002916	rad54b	99	58.552	Petromyzon_marinus
ENSPTRG00000020427	-	100	80.303	ENSPCIG00000020151	-	94	78.052	Phascolarctos_cinereus
ENSPTRG00000020427	-	99	59.537	ENSPFOG00000023411	rad54b	99	54.574	Poecilia_formosa
ENSPTRG00000020427	-	99	59.537	ENSPLAG00000010430	rad54b	99	54.468	Poecilia_latipinna
ENSPTRG00000020427	-	99	59.973	ENSPMEG00000016873	rad54b	95	58.990	Poecilia_mexicana
ENSPTRG00000020427	-	99	59.482	ENSPREG00000018443	rad54b	99	55.157	Poecilia_reticulata
ENSPTRG00000020427	-	100	99.036	ENSPPYG00000018750	-	100	98.571	Pongo_abelii
ENSPTRG00000020427	-	99	91.448	ENSPCOG00000026845	-	99	91.448	Propithecus_coquereli
ENSPTRG00000020427	-	99	90.207	ENSPVAG00000000261	-	92	90.148	Pteropus_vampyrus
ENSPTRG00000020427	-	99	58.162	ENSPNYG00000018303	rad54b	96	58.660	Pundamilia_nyererei
ENSPTRG00000020427	-	100	58.073	ENSPNAG00000000295	rad54b	99	54.341	Pygocentrus_nattereri
ENSPTRG00000020427	-	99	80.801	ENSRNOG00000039949	Rad54b	99	75.881	Rattus_norvegicus
ENSPTRG00000020427	-	100	97.383	ENSRBIG00000020419	-	100	96.703	Rhinopithecus_bieti
ENSPTRG00000020427	-	100	97.383	ENSRROG00000039897	-	100	96.703	Rhinopithecus_roxellana
ENSPTRG00000020427	-	78	43.464	YBR073W	RDH54	82	37.546	Saccharomyces_cerevisiae
ENSPTRG00000020427	-	100	96.006	ENSSBOG00000028501	-	100	94.731	Saimiri_boliviensis_boliviensis
ENSPTRG00000020427	-	99	81.051	ENSSHAG00000017038	-	99	75.192	Sarcophilus_harrisii
ENSPTRG00000020427	-	79	65.439	ENSSFOG00015008483	rad54b	88	65.439	Scleropages_formosus
ENSPTRG00000020427	-	99	57.967	ENSSMAG00000018659	rad54b	99	53.787	Scophthalmus_maximus
ENSPTRG00000020427	-	98	58.597	ENSSDUG00000001122	rad54b	98	53.659	Seriola_dumerili
ENSPTRG00000020427	-	99	58.687	ENSSLDG00000013787	rad54b	99	53.669	Seriola_lalandi_dorsalis
ENSPTRG00000020427	-	100	73.764	ENSSPUG00000016497	-	99	68.600	Sphenodon_punctatus
ENSPTRG00000020427	-	99	58.480	ENSSPAG00000012800	rad54b	99	54.870	Stegastes_partitus
ENSPTRG00000020427	-	100	88.430	ENSSSCG00000006101	-	99	88.500	Sus_scrofa
ENSPTRG00000020427	-	99	74.345	ENSTGUG00000011880	-	99	68.226	Taeniopygia_guttata
ENSPTRG00000020427	-	99	58.231	ENSTRUG00000010015	rad54b	99	52.670	Takifugu_rubripes
ENSPTRG00000020427	-	99	84.392	ENSTTRG00000006312	-	99	83.168	Tursiops_truncatus
ENSPTRG00000020427	-	99	90.897	ENSUMAG00000016401	-	99	87.692	Ursus_maritimus
ENSPTRG00000020427	-	99	88.950	ENSVPAG00000003157	-	99	84.581	Vicugna_pacos
ENSPTRG00000020427	-	99	58.516	ENSXETG00000025924	rad54b	99	59.426	Xenopus_tropicalis
ENSPTRG00000020427	-	99	58.333	ENSXMAG00000013141	rad54b	99	54.476	Xiphophorus_maculatus