EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000020458 (Gene tree)
Gene ID: 464303
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 42248 bases
Position: chr8:99893168-99935415
Accession: 8182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000064252	POP1	PF06978.11	2e-38	1	2
ENSPTRP00000064252	POP1	PF06978.11	2e-38	2	2
ENSPTRP00000034977	POP1	PF06978.11	2.2e-38	1	2
ENSPTRP00000034977	POP1	PF06978.11	2.2e-38	2	2
ENSPTRP00000064252	POPLD	PF08170.12	1.5e-27	1	1
ENSPTRP00000034977	POPLD	PF08170.12	1.6e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000037843	-	4746	XM_001149532	ENSPTRP00000034977	1024 (aa)	XP_001149532	H2QWH6
ENSPTRT00000101548	-	2988	-	ENSPTRP00000064252	995 (aa)	-	A0A2I3RHU2

Gene Model

Click here to download ENSPTRG00000020458's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03008	Ribosome biogenesis in eukaryotes	KEGG
ptr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000020458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000020458	POP1	100	99.316	ENSG00000104356	POP1	100	100.000	Homo_sapiens
ENSPTRG00000020458	POP1	100	48.866	ENSAPOG00000008198	pop1	100	48.771	Acanthochromis_polyacanthus
ENSPTRG00000020458	POP1	100	80.874	ENSAMEG00000000556	POP1	100	80.874	Ailuropoda_melanoleuca
ENSPTRG00000020458	POP1	90	50.000	ENSACIG00000004169	POP1	100	46.947	Amphilophus_citrinellus
ENSPTRG00000020458	POP1	100	47.642	ENSAOCG00000010991	pop1	100	47.682	Amphiprion_ocellaris
ENSPTRG00000020458	POP1	91	47.889	ENSAPEG00000007607	pop1	96	48.347	Amphiprion_percula
ENSPTRG00000020458	POP1	100	46.492	ENSATEG00000024814	POP1	100	46.516	Anabas_testudineus
ENSPTRG00000020458	POP1	92	63.617	ENSAPLG00000014418	POP1	100	63.617	Anas_platyrhynchos
ENSPTRG00000020458	POP1	100	56.543	ENSACAG00000016083	POP1	100	56.543	Anolis_carolinensis
ENSPTRG00000020458	POP1	93	94.065	ENSANAG00000026360	POP1	100	94.065	Aotus_nancymaae
ENSPTRG00000020458	POP1	93	53.678	ENSACLG00000010951	pop1	100	48.064	Astatotilapia_calliptera
ENSPTRG00000020458	POP1	100	45.680	ENSAMXG00000014483	POP1	100	45.028	Astyanax_mexicanus
ENSPTRG00000020458	POP1	100	80.859	ENSBTAG00000012596	POP1	100	80.762	Bos_taurus
ENSPTRG00000020458	POP1	100	93.359	ENSCJAG00000015567	POP1	100	93.359	Callithrix_jacchus
ENSPTRG00000020458	POP1	100	81.250	ENSCAFG00000000469	POP1	100	81.250	Canis_familiaris
ENSPTRG00000020458	POP1	100	82.422	ENSCAFG00020026765	POP1	100	82.422	Canis_lupus_dingo
ENSPTRG00000020458	POP1	100	81.073	ENSCHIG00000017066	POP1	100	80.878	Capra_hircus
ENSPTRG00000020458	POP1	100	86.816	ENSTSYG00000003097	POP1	100	86.816	Carlito_syrichta
ENSPTRG00000020458	POP1	100	78.328	ENSCAPG00000007251	POP1	100	78.328	Cavia_aperea
ENSPTRG00000020458	POP1	100	81.152	ENSCPOG00000002901	POP1	100	81.152	Cavia_porcellus
ENSPTRG00000020458	POP1	100	93.164	ENSCCAG00000018939	POP1	100	93.164	Cebus_capucinus
ENSPTRG00000020458	POP1	100	96.985	ENSCATG00000040916	POP1	100	96.985	Cercocebus_atys
ENSPTRG00000020458	POP1	100	82.422	ENSCLAG00000007208	POP1	97	82.422	Chinchilla_lanigera
ENSPTRG00000020458	POP1	90	96.204	ENSCSAG00000012340	POP1	99	96.204	Chlorocebus_sabaeus
ENSPTRG00000020458	POP1	95	80.430	ENSCHOG00000011432	POP1	100	80.020	Choloepus_hoffmanni
ENSPTRG00000020458	POP1	100	65.370	ENSCPBG00000006373	POP1	100	65.370	Chrysemys_picta_bellii
ENSPTRG00000020458	POP1	82	38.132	ENSCING00000008323	-	90	36.396	Ciona_intestinalis
ENSPTRG00000020458	POP1	100	96.875	ENSCANG00000001647	POP1	100	96.875	Colobus_angolensis_palliatus
ENSPTRG00000020458	POP1	100	76.878	ENSCGRG00001017308	Pop1	100	76.367	Cricetulus_griseus_chok1gshd
ENSPTRG00000020458	POP1	100	71.317	ENSCGRG00000010824	Pop1	100	70.801	Cricetulus_griseus_crigri
ENSPTRG00000020458	POP1	100	46.161	ENSCSEG00000008737	POP1	100	46.445	Cynoglossus_semilaevis
ENSPTRG00000020458	POP1	100	47.429	ENSCVAG00000022248	pop1	100	47.188	Cyprinodon_variegatus
ENSPTRG00000020458	POP1	100	78.134	ENSDNOG00000019974	POP1	100	78.134	Dasypus_novemcinctus
ENSPTRG00000020458	POP1	100	72.780	ENSDORG00000015384	Pop1	100	72.293	Dipodomys_ordii
ENSPTRG00000020458	POP1	61	32.278	FBgn0026702	l(1)G0045	70	32.177	Drosophila_melanogaster
ENSPTRG00000020458	POP1	84	78.205	ENSETEG00000007839	POP1	81	78.205	Echinops_telfairi
ENSPTRG00000020458	POP1	50	35.060	ENSEBUG00000014694	-	99	35.060	Eptatretus_burgeri
ENSPTRG00000020458	POP1	100	84.082	ENSEASG00005003189	POP1	98	84.082	Equus_asinus_asinus
ENSPTRG00000020458	POP1	100	84.082	ENSECAG00000024236	POP1	100	84.082	Equus_caballus
ENSPTRG00000020458	POP1	69	77.778	ENSEEUG00000003050	-	70	77.778	Erinaceus_europaeus
ENSPTRG00000020458	POP1	100	47.533	ENSELUG00000003526	pop1	100	47.104	Esox_lucius
ENSPTRG00000020458	POP1	100	84.180	ENSFCAG00000002168	POP1	100	84.180	Felis_catus
ENSPTRG00000020458	POP1	100	60.870	ENSFALG00000005711	POP1	100	61.004	Ficedula_albicollis
ENSPTRG00000020458	POP1	100	82.715	ENSFDAG00000017068	POP1	100	82.715	Fukomys_damarensis
ENSPTRG00000020458	POP1	91	51.511	ENSFHEG00000019518	pop1	100	47.474	Fundulus_heteroclitus
ENSPTRG00000020458	POP1	93	46.099	ENSGMOG00000000659	POP1	98	46.099	Gadus_morhua
ENSPTRG00000020458	POP1	100	47.449	ENSGAFG00000019770	POP1	100	46.917	Gambusia_affinis
ENSPTRG00000020458	POP1	100	47.143	ENSGACG00000003499	pop1	100	46.762	Gasterosteus_aculeatus
ENSPTRG00000020458	POP1	100	64.050	ENSGAGG00000011737	POP1	98	64.244	Gopherus_agassizii
ENSPTRG00000020458	POP1	100	99.023	ENSGGOG00000003176	POP1	100	99.023	Gorilla_gorilla
ENSPTRG00000020458	POP1	100	47.928	ENSHBUG00000021583	pop1	100	47.875	Haplochromis_burtoni
ENSPTRG00000020458	POP1	100	82.031	ENSHGLG00000006029	POP1	100	82.031	Heterocephalus_glaber_female
ENSPTRG00000020458	POP1	100	82.031	ENSHGLG00100016879	POP1	100	82.031	Heterocephalus_glaber_male
ENSPTRG00000020458	POP1	82	56.369	ENSHCOG00000013888	pop1	89	56.369	Hippocampus_comes
ENSPTRG00000020458	POP1	100	44.909	ENSIPUG00000018336	pop1	91	62.651	Ictalurus_punctatus
ENSPTRG00000020458	POP1	100	83.301	ENSSTOG00000011455	POP1	97	83.301	Ictidomys_tridecemlineatus
ENSPTRG00000020458	POP1	100	79.602	ENSJJAG00000013325	Pop1	100	79.602	Jaculus_jaculus
ENSPTRG00000020458	POP1	100	46.788	ENSKMAG00000001346	POP1	100	46.692	Kryptolebias_marmoratus
ENSPTRG00000020458	POP1	89	48.704	ENSLBEG00000024457	POP1	95	47.992	Labrus_bergylta
ENSPTRG00000020458	POP1	93	56.181	ENSLACG00000012498	POP1	99	56.244	Latimeria_chalumnae
ENSPTRG00000020458	POP1	100	51.336	ENSLOCG00000009817	POP1	100	50.958	Lepisosteus_oculatus
ENSPTRG00000020458	POP1	100	83.560	ENSLAFG00000010770	POP1	100	83.560	Loxodonta_africana
ENSPTRG00000020458	POP1	100	96.683	ENSMFAG00000000347	POP1	100	96.683	Macaca_fascicularis
ENSPTRG00000020458	POP1	100	96.181	ENSMNEG00000036870	POP1	100	96.181	Macaca_nemestrina
ENSPTRG00000020458	POP1	100	96.583	ENSMLEG00000034986	POP1	100	96.583	Mandrillus_leucophaeus
ENSPTRG00000020458	POP1	100	47.403	ENSMAMG00000004040	pop1	100	47.403	Mastacembelus_armatus
ENSPTRG00000020458	POP1	100	48.162	ENSMZEG00005025448	pop1	100	48.064	Maylandia_zebra
ENSPTRG00000020458	POP1	100	58.215	ENSMGAG00000012167	POP1	100	58.846	Meleagris_gallopavo
ENSPTRG00000020458	POP1	100	76.878	ENSMAUG00000017537	Pop1	100	76.878	Mesocricetus_auratus
ENSPTRG00000020458	POP1	100	89.713	ENSMICG00000004361	POP1	100	87.695	Microcebus_murinus
ENSPTRG00000020458	POP1	100	75.684	ENSMOCG00000006356	Pop1	100	76.562	Microtus_ochrogaster
ENSPTRG00000020458	POP1	100	44.951	ENSMMOG00000018242	pop1	100	44.951	Mola_mola
ENSPTRG00000020458	POP1	100	69.952	ENSMODG00000006561	POP1	100	69.758	Monodelphis_domestica
ENSPTRG00000020458	POP1	93	52.239	ENSMALG00000012621	POP1	100	47.727	Monopterus_albus
ENSPTRG00000020458	POP1	100	76.660	MGP_CAROLIEiJ_G0019726	Pop1	100	76.660	Mus_caroli
ENSPTRG00000020458	POP1	100	77.148	ENSMUSG00000022325	Pop1	100	77.148	Mus_musculus
ENSPTRG00000020458	POP1	100	76.953	MGP_PahariEiJ_G0019735	Pop1	100	76.953	Mus_pahari
ENSPTRG00000020458	POP1	100	76.562	MGP_SPRETEiJ_G0020622	Pop1	100	76.562	Mus_spretus
ENSPTRG00000020458	POP1	100	82.296	ENSMPUG00000015250	POP1	100	81.420	Mustela_putorius_furo
ENSPTRG00000020458	POP1	100	77.485	ENSMLUG00000010204	POP1	100	77.290	Myotis_lucifugus
ENSPTRG00000020458	POP1	100	82.227	ENSNGAG00000001582	Pop1	100	82.227	Nannospalax_galili
ENSPTRG00000020458	POP1	89	48.394	ENSNBRG00000002356	pop1	94	48.514	Neolamprologus_brichardi
ENSPTRG00000020458	POP1	100	97.266	ENSNLEG00000002541	POP1	100	97.266	Nomascus_leucogenys
ENSPTRG00000020458	POP1	90	72.046	ENSMEUG00000003118	POP1	92	72.046	Notamacropus_eugenii
ENSPTRG00000020458	POP1	100	79.297	ENSOPRG00000007667	POP1	100	79.199	Ochotona_princeps
ENSPTRG00000020458	POP1	100	80.409	ENSODEG00000003984	POP1	100	80.409	Octodon_degus
ENSPTRG00000020458	POP1	100	48.433	ENSONIG00000016445	pop1	100	48.488	Oreochromis_niloticus
ENSPTRG00000020458	POP1	59	69.512	ENSOANG00000001278	-	94	70.122	Ornithorhynchus_anatinus
ENSPTRG00000020458	POP1	100	82.021	ENSOCUG00000017400	POP1	100	82.021	Oryctolagus_cuniculus
ENSPTRG00000020458	POP1	100	47.459	ENSORLG00000002839	pop1	100	47.459	Oryzias_latipes
ENSPTRG00000020458	POP1	90	50.107	ENSORLG00020022450	POP1	96	49.682	Oryzias_latipes_hni
ENSPTRG00000020458	POP1	100	47.985	ENSORLG00015012746	POP1	100	48.035	Oryzias_latipes_hsok
ENSPTRG00000020458	POP1	100	48.066	ENSOMEG00000006915	pop1	99	47.582	Oryzias_melastigma
ENSPTRG00000020458	POP1	100	84.766	ENSOGAG00000001466	POP1	100	84.766	Otolemur_garnettii
ENSPTRG00000020458	POP1	100	99.414	ENSPPAG00000018410	POP1	100	99.414	Pan_paniscus
ENSPTRG00000020458	POP1	100	84.098	ENSPPRG00000005002	POP1	100	84.098	Panthera_pardus
ENSPTRG00000020458	POP1	100	84.488	ENSPTIG00000016527	POP1	100	84.488	Panthera_tigris_altaica
ENSPTRG00000020458	POP1	100	96.289	ENSPANG00000009704	POP1	100	96.289	Papio_anubis
ENSPTRG00000020458	POP1	100	49.617	ENSPKIG00000016325	POP1	100	49.040	Paramormyrops_kingsleyae
ENSPTRG00000020458	POP1	100	63.725	ENSPSIG00000012343	POP1	100	63.725	Pelodiscus_sinensis
ENSPTRG00000020458	POP1	90	49.413	ENSPMGG00000022253	POP1	95	49.679	Periophthalmus_magnuspinnatus
ENSPTRG00000020458	POP1	99	75.789	ENSPEMG00000023633	Pop1	100	75.789	Peromyscus_maniculatus_bairdii
ENSPTRG00000020458	POP1	90	44.351	ENSPMAG00000003209	POP1	100	44.093	Petromyzon_marinus
ENSPTRG00000020458	POP1	100	68.274	ENSPCIG00000012216	POP1	100	68.274	Phascolarctos_cinereus
ENSPTRG00000020458	POP1	100	48.848	ENSPFOG00000012490	POP1	100	48.316	Poecilia_formosa
ENSPTRG00000020458	POP1	100	48.703	ENSPLAG00000004646	POP1	100	48.170	Poecilia_latipinna
ENSPTRG00000020458	POP1	100	48.851	ENSPMEG00000019592	POP1	100	48.319	Poecilia_mexicana
ENSPTRG00000020458	POP1	100	48.750	ENSPREG00000020951	POP1	100	48.219	Poecilia_reticulata
ENSPTRG00000020458	POP1	100	97.852	ENSPPYG00000018777	POP1	100	97.852	Pongo_abelii
ENSPTRG00000020458	POP1	100	76.585	ENSPCAG00000016662	POP1	100	75.707	Procavia_capensis
ENSPTRG00000020458	POP1	100	88.086	ENSPCOG00000019420	POP1	100	88.086	Propithecus_coquereli
ENSPTRG00000020458	POP1	100	82.634	ENSPVAG00000014468	POP1	100	82.634	Pteropus_vampyrus
ENSPTRG00000020458	POP1	89	49.140	ENSPNYG00000004476	pop1	99	48.073	Pundamilia_nyererei
ENSPTRG00000020458	POP1	100	45.638	ENSPNAG00000000265	pop1	100	43.893	Pygocentrus_nattereri
ENSPTRG00000020458	POP1	100	77.832	ENSRNOG00000005243	Pop1	100	77.832	Rattus_norvegicus
ENSPTRG00000020458	POP1	100	96.777	ENSRBIG00000007996	POP1	100	96.777	Rhinopithecus_bieti
ENSPTRG00000020458	POP1	100	96.973	ENSRROG00000012334	POP1	100	96.973	Rhinopithecus_roxellana
ENSPTRG00000020458	POP1	99	94.170	ENSSBOG00000020830	POP1	100	94.170	Saimiri_boliviensis_boliviensis
ENSPTRG00000020458	POP1	100	68.925	ENSSHAG00000000296	POP1	100	68.925	Sarcophilus_harrisii
ENSPTRG00000020458	POP1	100	48.664	ENSSFOG00015007429	pop1	99	48.138	Scleropages_formosus
ENSPTRG00000020458	POP1	87	53.582	ENSSMAG00000010467	POP1	99	49.037	Scophthalmus_maximus
ENSPTRG00000020458	POP1	100	46.792	ENSSDUG00000007817	POP1	100	47.170	Seriola_dumerili
ENSPTRG00000020458	POP1	100	47.259	ENSSLDG00000012565	POP1	100	47.547	Seriola_lalandi_dorsalis
ENSPTRG00000020458	POP1	100	59.748	ENSSPUG00000003550	-	100	60.116	Sphenodon_punctatus
ENSPTRG00000020458	POP1	100	47.338	ENSSPAG00000014955	pop1	100	47.435	Stegastes_partitus
ENSPTRG00000020458	POP1	100	82.227	ENSSSCG00000006078	POP1	100	82.227	Sus_scrofa
ENSPTRG00000020458	POP1	92	57.778	ENSTGUG00000012011	-	100	57.778	Taeniopygia_guttata
ENSPTRG00000020458	POP1	91	48.520	ENSTRUG00000010856	pop1	94	48.520	Takifugu_rubripes
ENSPTRG00000020458	POP1	92	49.068	ENSTNIG00000013297	pop1	99	48.965	Tetraodon_nigroviridis
ENSPTRG00000020458	POP1	95	81.781	ENSTBEG00000014214	POP1	100	81.781	Tupaia_belangeri
ENSPTRG00000020458	POP1	100	80.469	ENSTTRG00000016071	POP1	100	80.469	Tursiops_truncatus
ENSPTRG00000020458	POP1	99	78.578	ENSUAMG00000017309	POP1	100	78.578	Ursus_americanus
ENSPTRG00000020458	POP1	92	90.283	ENSUMAG00000016952	POP1	100	90.283	Ursus_maritimus
ENSPTRG00000020458	POP1	82	88.321	ENSVPAG00000008278	POP1	82	88.321	Vicugna_pacos
ENSPTRG00000020458	POP1	100	82.520	ENSVVUG00000010994	POP1	100	82.520	Vulpes_vulpes
ENSPTRG00000020458	POP1	100	43.495	ENSXCOG00000017043	POP1	100	43.008	Xiphophorus_couchianus
ENSPTRG00000020458	POP1	100	47.839	ENSXMAG00000002472	POP1	100	47.303	Xiphophorus_maculatus