EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000022078 (Gene tree)
Gene ID: 465742
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:90983029-90984177
Accession: 10178
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000056253	RRM_5	PF13893.6	7.2e-13	1	2
ENSPTRP00000056253	RRM_5	PF13893.6	7.2e-13	2	2
ENSPTRP00000056253	RRM_1	PF00076.22	3.9e-77	1	4
ENSPTRP00000056253	RRM_1	PF00076.22	3.9e-77	2	4
ENSPTRP00000056253	RRM_1	PF00076.22	3.9e-77	3	4
ENSPTRP00000056253	RRM_1	PF00076.22	3.9e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000064692	-	1149	XM_009439306	ENSPTRP00000056253	382 (aa)	XP_009437581	P60049

Gene Model

Click here to download ENSPTRG00000022078's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000022078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000022078	PABPC5	96	62.259	ENSPTRG00000022593	PABPC3	58	62.360
ENSPTRG00000022078	PABPC5	93	59.694	ENSPTRG00000028252	-	98	59.375
ENSPTRG00000022078	PABPC5	96	66.942	ENSPTRG00000000573	PABPC4	60	67.135
ENSPTRG00000022078	PABPC5	98	64.690	ENSPTRG00000047939	PABPC1	61	65.730
ENSPTRG00000022078	PABPC5	83	32.335	ENSPTRG00000022010	NONO	51	33.333
ENSPTRG00000022078	PABPC5	94	35.802	ENSPTRG00000020830	ELAVL2	89	35.802
ENSPTRG00000022078	PABPC5	96	57.547	ENSPTRG00000013531	PABPC1L	95	57.556
ENSPTRG00000022078	PABPC5	99	58.507	ENSPTRG00000045513	-	74	59.810

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000022078	PABPC5	100	100.000	ENSG00000174740	PABPC5	100	100.000	Homo_sapiens
ENSPTRG00000022078	PABPC5	99	97.375	ENSAMEG00000020114	PABPC5	100	97.375	Ailuropoda_melanoleuca
ENSPTRG00000022078	PABPC5	100	100.000	ENSANAG00000005063	PABPC5	100	100.000	Aotus_nancymaae
ENSPTRG00000022078	PABPC5	99	96.850	ENSBTAG00000019942	PABPC5	99	96.850	Bos_taurus
ENSPTRG00000022078	PABPC5	100	99.476	ENSCJAG00000003665	PABPC5	100	99.476	Callithrix_jacchus
ENSPTRG00000022078	PABPC5	99	96.850	ENSCAFG00000017452	PABPC5	99	96.850	Canis_familiaris
ENSPTRG00000022078	PABPC5	99	96.850	ENSCHIG00000019004	PABPC5	99	96.850	Capra_hircus
ENSPTRG00000022078	PABPC5	99	97.900	ENSTSYG00000036351	PABPC5	99	97.900	Carlito_syrichta
ENSPTRG00000022078	PABPC5	99	88.421	ENSCAPG00000010714	PABPC5	99	88.421	Cavia_aperea
ENSPTRG00000022078	PABPC5	99	94.488	ENSCPOG00000002555	PABPC5	99	94.488	Cavia_porcellus
ENSPTRG00000022078	PABPC5	100	100.000	ENSCCAG00000032154	PABPC5	100	100.000	Cebus_capucinus
ENSPTRG00000022078	PABPC5	100	99.738	ENSCATG00000043083	PABPC5	100	99.738	Cercocebus_atys
ENSPTRG00000022078	PABPC5	99	95.801	ENSCLAG00000000647	PABPC5	99	95.801	Chinchilla_lanigera
ENSPTRG00000022078	PABPC5	100	99.738	ENSCSAG00000000065	PABPC5	100	99.738	Chlorocebus_sabaeus
ENSPTRG00000022078	PABPC5	100	99.738	ENSCANG00000011473	PABPC5	100	99.738	Colobus_angolensis_palliatus
ENSPTRG00000022078	PABPC5	99	94.226	ENSCGRG00000018699	Pabpc5	99	94.226	Cricetulus_griseus_crigri
ENSPTRG00000022078	PABPC5	99	78.796	ENSETEG00000011832	PABPC5	99	78.796	Echinops_telfairi
ENSPTRG00000022078	PABPC5	99	97.638	ENSEASG00005014396	PABPC5	99	97.638	Equus_asinus_asinus
ENSPTRG00000022078	PABPC5	99	97.638	ENSECAG00000003452	PABPC5	99	97.638	Equus_caballus
ENSPTRG00000022078	PABPC5	99	97.113	ENSFCAG00000004998	PABPC5	99	97.113	Felis_catus
ENSPTRG00000022078	PABPC5	99	96.325	ENSFDAG00000000126	PABPC5	99	96.325	Fukomys_damarensis
ENSPTRG00000022078	PABPC5	100	100.000	ENSGGOG00000007622	PABPC5	100	100.000	Gorilla_gorilla
ENSPTRG00000022078	PABPC5	95	96.774	ENSJJAG00000011960	Pabpc5	99	96.774	Jaculus_jaculus
ENSPTRG00000022078	PABPC5	100	99.738	ENSMFAG00000024561	PABPC5	100	99.738	Macaca_fascicularis
ENSPTRG00000022078	PABPC5	100	99.738	ENSMMUG00000011562	PABPC5	100	99.738	Macaca_mulatta
ENSPTRG00000022078	PABPC5	100	99.738	ENSMNEG00000037604	PABPC5	100	99.738	Macaca_nemestrina
ENSPTRG00000022078	PABPC5	100	99.738	ENSMLEG00000028318	PABPC5	100	99.738	Mandrillus_leucophaeus
ENSPTRG00000022078	PABPC5	99	96.588	ENSMICG00000041706	PABPC5	99	96.588	Microcebus_murinus
ENSPTRG00000022078	PABPC5	99	95.538	ENSMOCG00000001554	Pabpc5	99	95.538	Microtus_ochrogaster
ENSPTRG00000022078	PABPC5	99	94.987	MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	Mus_caroli
ENSPTRG00000022078	PABPC5	99	95.515	ENSMUSG00000034732	Pabpc5	99	95.515	Mus_musculus
ENSPTRG00000022078	PABPC5	99	95.801	MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	Mus_pahari
ENSPTRG00000022078	PABPC5	99	95.515	MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	Mus_spretus
ENSPTRG00000022078	PABPC5	99	96.588	ENSMPUG00000018465	PABPC5	99	96.588	Mustela_putorius_furo
ENSPTRG00000022078	PABPC5	99	96.063	ENSMLUG00000008244	PABPC5	99	96.063	Myotis_lucifugus
ENSPTRG00000022078	PABPC5	95	95.853	ENSNGAG00000004371	Pabpc5	99	95.853	Nannospalax_galili
ENSPTRG00000022078	PABPC5	100	100.000	ENSNLEG00000035086	PABPC5	100	100.000	Nomascus_leucogenys
ENSPTRG00000022078	PABPC5	98	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSPTRG00000022078	PABPC5	99	97.900	ENSOCUG00000010919	PABPC5	99	97.900	Oryctolagus_cuniculus
ENSPTRG00000022078	PABPC5	99	96.850	ENSOGAG00000006882	PABPC5	99	96.850	Otolemur_garnettii
ENSPTRG00000022078	PABPC5	99	97.113	ENSOARG00000010260	PABPC5	99	97.113	Ovis_aries
ENSPTRG00000022078	PABPC5	100	99.738	ENSPPAG00000007378	PABPC5	100	99.738	Pan_paniscus
ENSPTRG00000022078	PABPC5	99	97.113	ENSPPRG00000010742	PABPC5	99	97.113	Panthera_pardus
ENSPTRG00000022078	PABPC5	99	97.113	ENSPTIG00000001480	PABPC5	99	97.113	Panthera_tigris_altaica
ENSPTRG00000022078	PABPC5	100	99.738	ENSPANG00000018282	PABPC5	100	99.738	Papio_anubis
ENSPTRG00000022078	PABPC5	99	95.013	ENSPEMG00000000171	Pabpc5	99	95.013	Peromyscus_maniculatus_bairdii
ENSPTRG00000022078	PABPC5	100	100.000	ENSPPYG00000020526	PABPC5	100	100.000	Pongo_abelii
ENSPTRG00000022078	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSPTRG00000022078	PABPC5	99	97.375	ENSPCOG00000000676	PABPC5	99	97.375	Propithecus_coquereli
ENSPTRG00000022078	PABPC5	99	97.375	ENSPVAG00000006465	PABPC5	99	97.375	Pteropus_vampyrus
ENSPTRG00000022078	PABPC5	99	95.538	ENSRNOG00000003354	Pabpc5	99	95.538	Rattus_norvegicus
ENSPTRG00000022078	PABPC5	100	99.738	ENSRBIG00000011760	PABPC5	100	99.738	Rhinopithecus_bieti
ENSPTRG00000022078	PABPC5	100	99.738	ENSRROG00000036708	PABPC5	100	99.738	Rhinopithecus_roxellana
ENSPTRG00000022078	PABPC5	100	99.738	ENSSBOG00000008658	PABPC5	100	99.738	Saimiri_boliviensis_boliviensis
ENSPTRG00000022078	PABPC5	99	94.226	ENSSARG00000014012	PABPC5	99	94.226	Sorex_araneus
ENSPTRG00000022078	PABPC5	99	96.850	ENSSSCG00000040194	PABPC5	99	96.850	Sus_scrofa
ENSPTRG00000022078	PABPC5	99	98.163	ENSTBEG00000016482	PABPC5	99	98.163	Tupaia_belangeri
ENSPTRG00000022078	PABPC5	99	96.850	ENSUAMG00000013627	PABPC5	99	96.850	Ursus_americanus
ENSPTRG00000022078	PABPC5	99	96.588	ENSUMAG00000023934	PABPC5	99	96.588	Ursus_maritimus
ENSPTRG00000022078	PABPC5	99	97.375	ENSVPAG00000001063	PABPC5	99	97.375	Vicugna_pacos
ENSPTRG00000022078	PABPC5	99	97.113	ENSVVUG00000013172	PABPC5	99	97.113	Vulpes_vulpes