EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000031470 (Gene tree)
Gene ID: 747984
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 16437 bases
Position: chr19:19354612-19371048
Accession: 55586
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000064616	LSM	PF01423.22	1.5e-16	1	1
ENSPTRP00000091603	LSM	PF01423.22	4.7e-16	1	1
ENSPTRP00000054026	LSM	PF01423.22	1.4e-13	1	1
ENSPTRP00000080955	LSM	PF01423.22	1.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000100313	-	715	-	ENSPTRP00000091603	238 (aa)	-	A0A2I3TQR7
ENSPTRT00000087097	-	378	-	ENSPTRP00000080955	125 (aa)	-	A0A2I3SVG6
ENSPTRT00000060623	-	366	-	ENSPTRP00000054026	121 (aa)	-	H2RAK7
ENSPTRT00000084339	-	1233	XM_016935508	ENSPTRP00000064616	139 (aa)	XP_016790997	K6ZIP9

Gene Model

Click here to download ENSPTRG00000031470's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03018	RNA degradation	KEGG
ptr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000031470's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000031470	LSM4	52	34.722	ENSPTRG00000014176	SNRPD3	56	34.722
ENSPTRG00000031470	LSM4	70	32.000	ENSPTRG00000017986	LSM2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000031470	LSM4	100	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSPTRG00000031470	LSM4	99	73.510	ENSAPOG00000005643	lsm4	72	94.545	Acanthochromis_polyacanthus
ENSPTRG00000031470	LSM4	100	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSPTRG00000031470	LSM4	99	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSPTRG00000031470	LSM4	99	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSPTRG00000031470	LSM4	71	96.970	ENSATEG00000016559	lsm4	72	94.545	Anabas_testudineus
ENSPTRG00000031470	LSM4	100	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSPTRG00000031470	LSM4	98	78.295	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSPTRG00000031470	LSM4	99	84.058	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSPTRG00000031470	LSM4	100	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSPTRG00000031470	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSPTRG00000031470	LSM4	100	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSPTRG00000031470	LSM4	99	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSPTRG00000031470	LSM4	100	100.000	ENSCAFG00020012137	LSM4	100	100.000	Canis_lupus_dingo
ENSPTRG00000031470	LSM4	100	100.000	ENSCHIG00000010928	LSM4	91	100.000	Capra_hircus
ENSPTRG00000031470	LSM4	100	99.281	ENSTSYG00000030906	LSM4	100	99.281	Carlito_syrichta
ENSPTRG00000031470	LSM4	100	97.842	ENSCAPG00000014140	LSM4	100	97.842	Cavia_aperea
ENSPTRG00000031470	LSM4	100	97.842	ENSCPOG00000024117	LSM4	100	97.842	Cavia_porcellus
ENSPTRG00000031470	LSM4	100	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSPTRG00000031470	LSM4	100	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSPTRG00000031470	LSM4	100	96.403	ENSCLAG00000010828	LSM4	100	96.403	Chinchilla_lanigera
ENSPTRG00000031470	LSM4	100	100.000	ENSCSAG00000005370	LSM4	100	100.000	Chlorocebus_sabaeus
ENSPTRG00000031470	LSM4	100	82.014	ENSCPBG00000012925	LSM4	100	89.928	Chrysemys_picta_bellii
ENSPTRG00000031470	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSPTRG00000031470	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSPTRG00000031470	LSM4	100	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000031470	LSM4	100	95.683	ENSCGRG00001014436	Lsm4	100	95.683	Cricetulus_griseus_chok1gshd
ENSPTRG00000031470	LSM4	100	95.200	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSPTRG00000031470	LSM4	70	95.876	ENSCSEG00000016127	lsm4	84	81.513	Cynoglossus_semilaevis
ENSPTRG00000031470	LSM4	98	76.423	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSPTRG00000031470	LSM4	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSPTRG00000031470	LSM4	97	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSPTRG00000031470	LSM4	100	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSPTRG00000031470	LSM4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSPTRG00000031470	LSM4	99	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSPTRG00000031470	LSM4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSPTRG00000031470	LSM4	100	100.000	ENSECAG00000010141	LSM4	57	100.000	Equus_caballus
ENSPTRG00000031470	LSM4	95	84.328	ENSELUG00000012821	lsm4	82	95.413	Esox_lucius
ENSPTRG00000031470	LSM4	100	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSPTRG00000031470	LSM4	99	81.159	ENSFALG00000009478	LSM4	99	89.855	Ficedula_albicollis
ENSPTRG00000031470	LSM4	100	96.800	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSPTRG00000031470	LSM4	98	72.932	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSPTRG00000031470	LSM4	100	81.295	ENSGALG00000003385	LSM4	100	89.928	Gallus_gallus
ENSPTRG00000031470	LSM4	98	79.200	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSPTRG00000031470	LSM4	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSPTRG00000031470	LSM4	100	82.014	ENSGAGG00000017812	LSM4	100	89.928	Gopherus_agassizii
ENSPTRG00000031470	LSM4	100	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSPTRG00000031470	LSM4	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSPTRG00000031470	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSPTRG00000031470	LSM4	99	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSPTRG00000031470	LSM4	99	84.058	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSPTRG00000031470	LSM4	100	100.000	ENSSTOG00000016494	LSM4	100	100.000	Ictidomys_tridecemlineatus
ENSPTRG00000031470	LSM4	100	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSPTRG00000031470	LSM4	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSPTRG00000031470	LSM4	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSPTRG00000031470	LSM4	99	83.212	ENSLACG00000015861	LSM4	98	83.212	Latimeria_chalumnae
ENSPTRG00000031470	LSM4	93	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSPTRG00000031470	LSM4	100	98.400	ENSLAFG00000017459	LSM4	99	98.551	Loxodonta_africana
ENSPTRG00000031470	LSM4	100	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSPTRG00000031470	LSM4	100	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSPTRG00000031470	LSM4	100	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSPTRG00000031470	LSM4	100	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000031470	LSM4	99	79.710	ENSMAMG00000006190	lsm4	77	94.545	Mastacembelus_armatus
ENSPTRG00000031470	LSM4	98	78.906	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSPTRG00000031470	LSM4	99	82.734	ENSMGAG00000004976	LSM4	99	89.855	Meleagris_gallopavo
ENSPTRG00000031470	LSM4	100	99.281	ENSMICG00000000222	LSM4	100	99.281	Microcebus_murinus
ENSPTRG00000031470	LSM4	100	96.403	ENSMOCG00000020861	Lsm4	100	96.403	Microtus_ochrogaster
ENSPTRG00000031470	LSM4	99	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSPTRG00000031470	LSM4	99	77.143	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSPTRG00000031470	LSM4	100	96.403	MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	Mus_caroli
ENSPTRG00000031470	LSM4	100	96.403	ENSMUSG00000031848	Lsm4	100	96.403	Mus_musculus
ENSPTRG00000031470	LSM4	100	96.403	MGP_PahariEiJ_G0021623	Lsm4	100	96.403	Mus_pahari
ENSPTRG00000031470	LSM4	100	96.403	MGP_SPRETEiJ_G0032276	Lsm4	100	96.403	Mus_spretus
ENSPTRG00000031470	LSM4	100	100.000	ENSMPUG00000015589	LSM4	100	100.000	Mustela_putorius_furo
ENSPTRG00000031470	LSM4	100	100.000	ENSMLUG00000004010	LSM4	99	100.000	Myotis_lucifugus
ENSPTRG00000031470	LSM4	100	96.403	ENSNGAG00000008644	Lsm4	100	96.403	Nannospalax_galili
ENSPTRG00000031470	LSM4	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSPTRG00000031470	LSM4	99	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSPTRG00000031470	LSM4	99	96.667	ENSOPRG00000005575	LSM4	100	87.500	Ochotona_princeps
ENSPTRG00000031470	LSM4	100	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSPTRG00000031470	LSM4	100	87.050	ENSODEG00000004519	-	100	74.820	Octodon_degus
ENSPTRG00000031470	LSM4	100	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSPTRG00000031470	LSM4	98	78.295	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSPTRG00000031470	LSM4	60	98.630	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSPTRG00000031470	LSM4	99	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSPTRG00000031470	LSM4	98	80.159	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSPTRG00000031470	LSM4	99	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSPTRG00000031470	LSM4	100	83.453	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSPTRG00000031470	LSM4	71	98.990	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSPTRG00000031470	LSM4	95	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSPTRG00000031470	LSM4	100	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSPTRG00000031470	LSM4	100	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSPTRG00000031470	LSM4	100	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSPTRG00000031470	LSM4	100	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSPTRG00000031470	LSM4	99	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSPTRG00000031470	LSM4	99	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSPTRG00000031470	LSM4	100	96.403	ENSPEMG00000001358	Lsm4	100	96.403	Peromyscus_maniculatus_bairdii
ENSPTRG00000031470	LSM4	99	76.389	ENSPLAG00000016267	lsm4	83	81.513	Poecilia_latipinna
ENSPTRG00000031470	LSM4	98	80.000	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSPTRG00000031470	LSM4	100	100.000	ENSPPYG00000009736	LSM4	100	100.000	Pongo_abelii
ENSPTRG00000031470	LSM4	99	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSPTRG00000031470	LSM4	100	99.281	ENSPCOG00000019837	LSM4	100	99.281	Propithecus_coquereli
ENSPTRG00000031470	LSM4	100	100.000	ENSPVAG00000015383	LSM4	100	100.000	Pteropus_vampyrus
ENSPTRG00000031470	LSM4	98	78.906	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSPTRG00000031470	LSM4	96	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSPTRG00000031470	LSM4	100	96.403	ENSRNOG00000019572	Lsm4	100	96.403	Rattus_norvegicus
ENSPTRG00000031470	LSM4	100	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSPTRG00000031470	LSM4	100	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000031470	LSM4	60	40.860	YER112W	LSM4	50	41.935	Saccharomyces_cerevisiae
ENSPTRG00000031470	LSM4	100	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000031470	LSM4	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSPTRG00000031470	LSM4	99	80.292	ENSSFOG00015021067	lsm4	98	76.087	Scleropages_formosus
ENSPTRG00000031470	LSM4	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSPTRG00000031470	LSM4	71	96.970	ENSSDUG00000009588	lsm4	65	94.545	Seriola_dumerili
ENSPTRG00000031470	LSM4	71	96.970	ENSSLDG00000006827	lsm4	65	94.545	Seriola_lalandi_dorsalis
ENSPTRG00000031470	LSM4	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSPTRG00000031470	LSM4	99	73.510	ENSSPAG00000011615	lsm4	72	94.545	Stegastes_partitus
ENSPTRG00000031470	LSM4	100	100.000	ENSSSCG00000034314	LSM4	100	100.000	Sus_scrofa
ENSPTRG00000031470	LSM4	98	78.400	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSPTRG00000031470	LSM4	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSPTRG00000031470	LSM4	100	100.000	ENSUAMG00000000665	LSM4	99	100.000	Ursus_americanus
ENSPTRG00000031470	LSM4	100	100.000	ENSUMAG00000009013	LSM4	100	100.000	Ursus_maritimus
ENSPTRG00000031470	LSM4	100	100.000	ENSVVUG00000008136	LSM4	71	100.000	Vulpes_vulpes
ENSPTRG00000031470	LSM4	100	91.367	ENSXETG00000024933	lsm4	100	89.209	Xenopus_tropicalis