EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000041588 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC3D
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3D
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 11626 bases
Position: chr22:25589017-25600642
Accession: 12808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000062625	APOBEC_N	PF08210.11	7.9e-100	1	2
ENSPTRP00000062625	APOBEC_N	PF08210.11	7.9e-100	2	2
ENSPTRP00000065294	APOBEC_N	PF08210.11	8.4e-91	1	2
ENSPTRP00000065294	APOBEC_N	PF08210.11	8.4e-91	2	2
ENSPTRP00000069841	APOBEC_N	PF08210.11	7.9e-55	1	1
ENSPTRP00000077324	APOBEC_N	PF08210.11	8.5e-55	1	1
ENSPTRP00000090211	APOBEC_N	PF08210.11	9.6e-52	1	1
ENSPTRP00000062625	APOBEC_C	PF05240.14	5.5e-64	1	2
ENSPTRP00000062625	APOBEC_C	PF05240.14	5.5e-64	2	2
ENSPTRP00000065294	APOBEC_C	PF05240.14	4.8e-50	1	2
ENSPTRP00000065294	APOBEC_C	PF05240.14	4.8e-50	2	2
ENSPTRP00000069841	APOBEC_C	PF05240.14	1.8e-32	1	1
ENSPTRP00000077324	APOBEC_C	PF05240.14	1.9e-32	1	1
ENSPTRP00000090211	APOBEC_C	PF05240.14	2e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000090654	-	609	-	ENSPTRP00000090211	202 (aa)	-	A0A2I3TLS9
ENSPTRT00000101673	-	585	-	ENSPTRP00000077324	194 (aa)	-	A0A2I3SLF6
ENSPTRT00000097865	-	1185	-	ENSPTRP00000065294	394 (aa)	-	A0A2I3RKT3
ENSPTRT00000089101	-	573	-	ENSPTRP00000069841	190 (aa)	-	A0A2I3RYS5
ENSPTRT00000105982	-	1999	XM_525657	ENSPTRP00000062625	386 (aa)	XP_525657	G3KJ92

Gene Model

Click here to download ENSPTRG00000041588's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000041588's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000041588	APOBEC3D	94	41.954	ENSPTRG00000004640	AICDA	96	41.912
ENSPTRG00000041588	APOBEC3D	100	48.792	ENSPTRG00000014387	APOBEC3G	97	48.792
ENSPTRG00000041588	APOBEC3D	100	78.421	ENSPTRG00000014384	APOBEC3B	100	78.421
ENSPTRG00000041588	APOBEC3D	100	84.536	ENSPTRG00000014385	APOBEC3C	100	84.536
ENSPTRG00000041588	APOBEC3D	84	34.356	ENSPTRG00000014390	APOBEC3H	99	32.275

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000041588	APOBEC3D	100	83.871	ENSG00000128394	APOBEC3F	100	83.871	Homo_sapiens
ENSPTRG00000041588	APOBEC3D	100	92.079	ENSG00000243811	APOBEC3D	100	92.079	Homo_sapiens
ENSPTRG00000041588	APOBEC3D	100	77.368	ENSG00000244509	APOBEC3C	100	77.368	Homo_sapiens
ENSPTRG00000041588	APOBEC3D	100	66.316	ENSANAG00000030088	-	99	65.803	Aotus_nancymaae
ENSPTRG00000041588	APOBEC3D	69	66.667	ENSCJAG00000015317	-	100	66.667	Callithrix_jacchus
ENSPTRG00000041588	APOBEC3D	99	47.594	ENSCAFG00020002615	-	99	47.594	Canis_lupus_dingo
ENSPTRG00000041588	APOBEC3D	98	48.634	ENSTSYG00000030036	-	99	48.634	Carlito_syrichta
ENSPTRG00000041588	APOBEC3D	100	51.323	ENSTSYG00000034260	-	97	51.323	Carlito_syrichta
ENSPTRG00000041588	APOBEC3D	97	53.552	ENSTSYG00000028254	-	99	53.552	Carlito_syrichta
ENSPTRG00000041588	APOBEC3D	98	63.978	ENSCCAG00000030932	-	90	61.000	Cebus_capucinus
ENSPTRG00000041588	APOBEC3D	100	73.158	ENSCATG00000043226	APOBEC3C	100	73.158	Cercocebus_atys
ENSPTRG00000041588	APOBEC3D	98	74.457	ENSCATG00000033502	-	100	73.118	Cercocebus_atys
ENSPTRG00000041588	APOBEC3D	100	76.882	ENSCSAG00000006382	APOBEC3F	100	76.882	Chlorocebus_sabaeus
ENSPTRG00000041588	APOBEC3D	100	74.211	ENSCSAG00000006402	APOBEC3C	100	74.211	Chlorocebus_sabaeus
ENSPTRG00000041588	APOBEC3D	100	74.457	ENSCANG00000033269	-	100	74.457	Colobus_angolensis_palliatus
ENSPTRG00000041588	APOBEC3D	100	77.957	ENSCANG00000032904	-	100	77.957	Colobus_angolensis_palliatus
ENSPTRG00000041588	APOBEC3D	100	75.269	ENSCANG00000031957	-	100	75.269	Colobus_angolensis_palliatus
ENSPTRG00000041588	APOBEC3D	100	73.158	ENSCANG00000039177	APOBEC3C	100	73.158	Colobus_angolensis_palliatus
ENSPTRG00000041588	APOBEC3D	97	39.362	ENSDNOG00000044642	-	99	39.362	Dasypus_novemcinctus
ENSPTRG00000041588	APOBEC3D	100	46.829	ENSEASG00005018641	-	100	46.829	Equus_asinus_asinus
ENSPTRG00000041588	APOBEC3D	100	47.283	ENSECAG00000006071	-	100	47.312	Equus_caballus
ENSPTRG00000041588	APOBEC3D	100	84.409	ENSGGOG00000038678	APOBEC3F	100	84.409	Gorilla_gorilla
ENSPTRG00000041588	APOBEC3D	100	82.632	ENSGGOG00000036587	-	100	82.632	Gorilla_gorilla
ENSPTRG00000041588	APOBEC3D	99	44.000	ENSHGLG00000017315	-	92	41.146	Heterocephalus_glaber_female
ENSPTRG00000041588	APOBEC3D	99	43.500	ENSHGLG00100003105	-	94	44.149	Heterocephalus_glaber_male
ENSPTRG00000041588	APOBEC3D	100	73.118	ENSMFAG00000004037	APOBEC3F	100	73.118	Macaca_fascicularis
ENSPTRG00000041588	APOBEC3D	100	71.579	ENSMFAG00000016792	APOBEC3C	100	71.579	Macaca_fascicularis
ENSPTRG00000041588	APOBEC3D	100	74.352	ENSMFAG00000002331	-	100	74.352	Macaca_fascicularis
ENSPTRG00000041588	APOBEC3D	100	75.190	ENSMMUG00000004017	APOBEC3F	100	75.190	Macaca_mulatta
ENSPTRG00000041588	APOBEC3D	99	71.351	ENSMMUG00000004018	APOBEC3C	100	68.557	Macaca_mulatta
ENSPTRG00000041588	APOBEC3D	100	72.632	ENSMNEG00000045196	APOBEC3C	100	72.632	Macaca_nemestrina
ENSPTRG00000041588	APOBEC3D	100	75.696	ENSMNEG00000043316	APOBEC3D	100	75.696	Macaca_nemestrina
ENSPTRG00000041588	APOBEC3D	100	74.731	ENSMLEG00000029642	APOBEC3F	100	74.731	Mandrillus_leucophaeus
ENSPTRG00000041588	APOBEC3D	100	73.158	ENSMLEG00000036992	APOBEC3C	100	73.158	Mandrillus_leucophaeus
ENSPTRG00000041588	APOBEC3D	99	52.660	ENSMICG00000042615	-	89	52.660	Microcebus_murinus
ENSPTRG00000041588	APOBEC3D	99	43.939	ENSMLUG00000023676	-	99	44.503	Myotis_lucifugus
ENSPTRG00000041588	APOBEC3D	100	72.632	ENSNLEG00000028392	APOBEC3C	100	72.632	Nomascus_leucogenys
ENSPTRG00000041588	APOBEC3D	100	75.648	ENSNLEG00000035811	-	100	75.648	Nomascus_leucogenys
ENSPTRG00000041588	APOBEC3D	100	45.361	ENSOGAG00000032498	-	99	46.774	Otolemur_garnettii
ENSPTRG00000041588	APOBEC3D	98	46.369	ENSOGAG00000033404	-	100	46.369	Otolemur_garnettii
ENSPTRG00000041588	APOBEC3D	99	44.776	ENSOGAG00000030300	-	99	44.149	Otolemur_garnettii
ENSPTRG00000041588	APOBEC3D	100	78.421	ENSPPAG00000014118	APOBEC3C	100	78.421	Pan_paniscus
ENSPTRG00000041588	APOBEC3D	100	99.474	ENSPPAG00000028218	-	100	99.474	Pan_paniscus
ENSPTRG00000041588	APOBEC3D	99	48.387	ENSPPRG00000003726	-	100	47.895	Panthera_pardus
ENSPTRG00000041588	APOBEC3D	100	74.731	ENSPANG00000010775	APOBEC3F	100	74.731	Papio_anubis
ENSPTRG00000041588	APOBEC3D	100	77.368	ENSPPYG00000011832	APOBEC3C	100	77.368	Pongo_abelii
ENSPTRG00000041588	APOBEC3D	68	55.039	ENSPCOG00000022067	-	98	55.039	Propithecus_coquereli
ENSPTRG00000041588	APOBEC3D	66	56.349	ENSPCOG00000018072	-	95	56.349	Propithecus_coquereli
ENSPTRG00000041588	APOBEC3D	75	44.715	ENSPVAG00000009461	-	66	44.715	Pteropus_vampyrus
ENSPTRG00000041588	APOBEC3D	100	75.789	ENSRBIG00000030323	-	100	77.419	Rhinopithecus_bieti
ENSPTRG00000041588	APOBEC3D	100	75.556	ENSRBIG00000042297	-	100	75.556	Rhinopithecus_bieti
ENSPTRG00000041588	APOBEC3D	100	78.351	ENSRBIG00000030834	-	100	78.351	Rhinopithecus_bieti
ENSPTRG00000041588	APOBEC3D	100	77.320	ENSRROG00000028557	-	100	77.320	Rhinopithecus_roxellana
ENSPTRG00000041588	APOBEC3D	100	75.806	ENSRROG00000029045	APOBEC3C	100	75.806	Rhinopithecus_roxellana
ENSPTRG00000041588	APOBEC3D	100	75.556	ENSRROG00000029996	-	100	75.556	Rhinopithecus_roxellana
ENSPTRG00000041588	APOBEC3D	100	65.789	ENSSBOG00000032780	-	100	65.789	Saimiri_boliviensis_boliviensis
ENSPTRG00000041588	APOBEC3D	96	45.604	ENSUAMG00000004433	-	100	45.604	Ursus_americanus
ENSPTRG00000041588	APOBEC3D	97	46.486	ENSUMAG00000014441	-	87	45.989	Ursus_maritimus
ENSPTRG00000041588	APOBEC3D	80	49.689	ENSVVUG00000014628	-	97	48.366	Vulpes_vulpes