EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000044686 (Gene tree)
Gene ID: 469946
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 5744 bases
Position: chr20:45099137-45104880
Accession: 469946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000073229	RRM_1	PF00076.22	1.8e-32	1	2
ENSPTRP00000073229	RRM_1	PF00076.22	1.8e-32	2	2
ENSPTRP00000079978	RRM_1	PF00076.22	4.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000098619	-	3749	XM_016937936	ENSPTRP00000073229	344 (aa)	XP_016793425	K7ASG4
ENSPTRT00000076975	-	408	-	ENSPTRP00000079978	135 (aa)	-	A0A2I3SSG3

Gene Model

Click here to download ENSPTRG00000044686's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03040	Spliceosome	KEGG
ptr05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000044686's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000044686	-	59	42.857	ENSPTRG00000052688	-	76	42.857
ENSPTRG00000044686	-	51	47.297	ENSPTRG00000005535	SRSF9	71	41.143
ENSPTRG00000044686	-	90	86.084	ENSPTRG00000046274	-	100	88.350
ENSPTRG00000044686	-	50	71.642	ENSPTRG00000006488	SRSF5	86	62.295
ENSPTRG00000044686	-	53	37.975	ENSPTRG00000052587	RBMX	82	37.500
ENSPTRG00000044686	-	56	46.835	ENSPTRG00000018106	SRSF3	72	41.176
ENSPTRG00000044686	-	62	32.143	ENSPTRG00000003935	RBM4B	57	32.143
ENSPTRG00000044686	-	75	30.693	ENSPTRG00000003934	RBM14	59	32.143
ENSPTRG00000044686	-	58	40.670	ENSPTRG00000049077	SRSF1	77	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000044686	-	100	100.000	ENSG00000124193	SRSF6	100	100.000	Homo_sapiens
ENSPTRG00000044686	-	58	93.590	ENSAPOG00000016635	-	84	82.353	Acanthochromis_polyacanthus
ENSPTRG00000044686	-	94	85.538	ENSAMEG00000003710	SRSF6	94	85.276	Ailuropoda_melanoleuca
ENSPTRG00000044686	-	86	68.581	ENSACIG00000023658	-	56	87.778	Amphilophus_citrinellus
ENSPTRG00000044686	-	97	60.290	ENSACIG00000020091	-	95	80.315	Amphilophus_citrinellus
ENSPTRG00000044686	-	65	82.955	ENSAOCG00000004309	-	57	83.152	Amphiprion_ocellaris
ENSPTRG00000044686	-	92	67.939	ENSAOCG00000019438	-	98	67.939	Amphiprion_ocellaris
ENSPTRG00000044686	-	98	61.871	ENSAPEG00000013086	-	53	88.172	Amphiprion_percula
ENSPTRG00000044686	-	63	84.706	ENSAPEG00000020746	-	66	79.787	Amphiprion_percula
ENSPTRG00000044686	-	66	83.146	ENSATEG00000007255	-	71	80.000	Anabas_testudineus
ENSPTRG00000044686	-	94	82.716	ENSACAG00000002061	SRSF6	93	85.231	Anolis_carolinensis
ENSPTRG00000044686	-	100	100.000	ENSANAG00000024080	SRSF6	100	100.000	Aotus_nancymaae
ENSPTRG00000044686	-	54	89.041	ENSACLG00000024373	-	96	79.570	Astatotilapia_calliptera
ENSPTRG00000044686	-	55	93.243	ENSAMXG00000003101	-	51	85.789	Astyanax_mexicanus
ENSPTRG00000044686	-	55	91.892	ENSAMXG00000042692	-	96	78.519	Astyanax_mexicanus
ENSPTRG00000044686	-	100	99.259	ENSBTAG00000008527	SRSF6	100	99.259	Bos_taurus
ENSPTRG00000044686	-	100	100.000	ENSCJAG00000048403	SRSF6	100	100.000	Callithrix_jacchus
ENSPTRG00000044686	-	100	99.259	ENSCAFG00000009289	SRSF6	100	99.259	Canis_familiaris
ENSPTRG00000044686	-	100	99.259	ENSCAFG00020013559	SRSF6	100	99.259	Canis_lupus_dingo
ENSPTRG00000044686	-	100	99.259	ENSCHIG00000015890	-	100	99.259	Capra_hircus
ENSPTRG00000044686	-	100	96.821	ENSCHIG00000009148	-	100	96.821	Capra_hircus
ENSPTRG00000044686	-	100	82.659	ENSTSYG00000026476	SRSF6	100	82.659	Carlito_syrichta
ENSPTRG00000044686	-	100	100.000	ENSCPOG00000011761	SRSF6	100	100.000	Cavia_porcellus
ENSPTRG00000044686	-	100	100.000	ENSCCAG00000026018	-	100	100.000	Cebus_capucinus
ENSPTRG00000044686	-	94	71.605	ENSCCAG00000018540	-	62	87.766	Cebus_capucinus
ENSPTRG00000044686	-	100	100.000	ENSCATG00000030794	SRSF6	100	100.000	Cercocebus_atys
ENSPTRG00000044686	-	100	100.000	ENSCLAG00000010247	SRSF6	100	100.000	Chinchilla_lanigera
ENSPTRG00000044686	-	100	99.128	ENSCSAG00000014022	SRSF6	100	99.128	Chlorocebus_sabaeus
ENSPTRG00000044686	-	100	82.948	ENSCHOG00000000561	SRSF6	77	100.000	Choloepus_hoffmanni
ENSPTRG00000044686	-	58	97.436	ENSCPBG00000018200	SRSF6	94	84.756	Chrysemys_picta_bellii
ENSPTRG00000044686	-	100	84.593	ENSCANG00000042529	-	100	84.593	Colobus_angolensis_palliatus
ENSPTRG00000044686	-	100	98.837	ENSCANG00000037774	-	100	98.837	Colobus_angolensis_palliatus
ENSPTRG00000044686	-	100	98.519	ENSCGRG00001022339	Srsf6	100	98.519	Cricetulus_griseus_chok1gshd
ENSPTRG00000044686	-	63	95.349	ENSCGRG00000006618	Srsf6	100	95.349	Cricetulus_griseus_crigri
ENSPTRG00000044686	-	58	93.590	ENSCSEG00000019778	SRSF6	90	84.252	Cynoglossus_semilaevis
ENSPTRG00000044686	-	58	92.308	ENSCVAG00000001863	SRSF6	95	85.039	Cyprinodon_variegatus
ENSPTRG00000044686	-	55	90.541	ENSDARG00000016783	srsf6b	87	89.157	Danio_rerio
ENSPTRG00000044686	-	94	95.679	ENSDNOG00000008410	SRSF6	94	95.679	Dasypus_novemcinctus
ENSPTRG00000044686	-	100	100.000	ENSDORG00000028378	Srsf6	100	100.000	Dipodomys_ordii
ENSPTRG00000044686	-	92	93.125	ENSETEG00000006221	SRSF6	94	90.462	Echinops_telfairi
ENSPTRG00000044686	-	100	96.532	ENSEASG00005023429	SRSF6	100	96.532	Equus_asinus_asinus
ENSPTRG00000044686	-	100	96.532	ENSECAG00000023932	SRSF6	100	96.532	Equus_caballus
ENSPTRG00000044686	-	56	93.333	ENSEEUG00000002324	SRSF6	90	93.434	Erinaceus_europaeus
ENSPTRG00000044686	-	98	59.286	ENSELUG00000024182	SRSF6	85	87.356	Esox_lucius
ENSPTRG00000044686	-	73	77.778	ENSELUG00000013506	SRSF6	88	77.778	Esox_lucius
ENSPTRG00000044686	-	100	97.110	ENSFCAG00000032814	SRSF6	100	97.110	Felis_catus
ENSPTRG00000044686	-	94	81.481	ENSFDAG00000012191	SRSF6	94	78.462	Fukomys_damarensis
ENSPTRG00000044686	-	87	71.148	ENSFHEG00000023065	srsf6a	55	87.500	Fundulus_heteroclitus
ENSPTRG00000044686	-	56	90.789	ENSGMOG00000014458	srsf6a	52	78.646	Gadus_morhua
ENSPTRG00000044686	-	61	76.829	ENSGMOG00000006105	srsf6a	62	70.391	Gadus_morhua
ENSPTRG00000044686	-	100	97.037	ENSGALG00000000990	SRSF6	100	97.037	Gallus_gallus
ENSPTRG00000044686	-	58	92.308	ENSGAFG00000019088	-	72	82.400	Gambusia_affinis
ENSPTRG00000044686	-	98	61.194	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSPTRG00000044686	-	58	97.436	ENSGAGG00000003238	SRSF6	94	84.756	Gopherus_agassizii
ENSPTRG00000044686	-	100	100.000	ENSGGOG00000009808	SRSF6	100	100.000	Gorilla_gorilla
ENSPTRG00000044686	-	56	89.474	ENSHBUG00000006386	-	58	83.696	Haplochromis_burtoni
ENSPTRG00000044686	-	100	100.000	ENSHGLG00000007348	SRSF6	100	100.000	Heterocephalus_glaber_female
ENSPTRG00000044686	-	90	76.038	ENSHGLG00000007701	-	58	79.144	Heterocephalus_glaber_female
ENSPTRG00000044686	-	94	81.790	ENSHGLG00100005043	SRSF6	94	78.769	Heterocephalus_glaber_male
ENSPTRG00000044686	-	58	89.744	ENSHCOG00000002740	srsf6a	57	83.152	Hippocampus_comes
ENSPTRG00000044686	-	58	92.308	ENSIPUG00000004776	-	72	72.103	Ictalurus_punctatus
ENSPTRG00000044686	-	100	100.000	ENSSTOG00000010866	SRSF6	100	100.000	Ictidomys_tridecemlineatus
ENSPTRG00000044686	-	56	95.812	ENSJJAG00000020690	Srsf6	91	95.855	Jaculus_jaculus
ENSPTRG00000044686	-	54	93.151	ENSKMAG00000011934	srsf6a	59	85.870	Kryptolebias_marmoratus
ENSPTRG00000044686	-	58	92.308	ENSLBEG00000007356	srsf6a	52	85.484	Labrus_bergylta
ENSPTRG00000044686	-	89	82.903	ENSLACG00000005466	SRSF6	54	91.848	Latimeria_chalumnae
ENSPTRG00000044686	-	69	95.397	ENSLAFG00000006682	SRSF6	89	95.217	Loxodonta_africana
ENSPTRG00000044686	-	100	100.000	ENSMFAG00000036925	SRSF6	100	100.000	Macaca_fascicularis
ENSPTRG00000044686	-	100	100.000	ENSMMUG00000006742	SRSF6	100	100.000	Macaca_mulatta
ENSPTRG00000044686	-	100	97.674	ENSMNEG00000038270	-	100	97.674	Macaca_nemestrina
ENSPTRG00000044686	-	100	98.547	ENSMNEG00000027392	-	100	98.547	Macaca_nemestrina
ENSPTRG00000044686	-	63	98.605	ENSMLEG00000031524	SRSF6	100	98.605	Mandrillus_leucophaeus
ENSPTRG00000044686	-	98	61.871	ENSMAMG00000017161	srsf6a	53	87.634	Mastacembelus_armatus
ENSPTRG00000044686	-	63	87.059	ENSMAMG00000023477	-	89	87.059	Mastacembelus_armatus
ENSPTRG00000044686	-	56	89.474	ENSMZEG00005008032	-	57	83.696	Maylandia_zebra
ENSPTRG00000044686	-	98	58.333	ENSMZEG00005020658	-	60	82.873	Maylandia_zebra
ENSPTRG00000044686	-	100	98.519	ENSMAUG00000019086	-	100	98.519	Mesocricetus_auratus
ENSPTRG00000044686	-	100	100.000	ENSMICG00000008537	SRSF6	100	100.000	Microcebus_murinus
ENSPTRG00000044686	-	63	95.349	ENSMOCG00000018738	Srsf6	100	95.349	Microtus_ochrogaster
ENSPTRG00000044686	-	58	92.308	ENSMMOG00000015241	-	78	90.361	Mola_mola
ENSPTRG00000044686	-	58	97.436	ENSMODG00000003107	SRSF6	95	90.798	Monodelphis_domestica
ENSPTRG00000044686	-	100	98.519	MGP_CAROLIEiJ_G0024606	Srsf6	100	98.519	Mus_caroli
ENSPTRG00000044686	-	100	98.519	ENSMUSG00000016921	Srsf6	100	98.519	Mus_musculus
ENSPTRG00000044686	-	100	98.519	MGP_PahariEiJ_G0026050	Srsf6	100	98.519	Mus_pahari
ENSPTRG00000044686	-	100	98.519	MGP_SPRETEiJ_G0025528	Srsf6	100	98.519	Mus_spretus
ENSPTRG00000044686	-	83	97.569	ENSMPUG00000017692	SRSF6	99	97.569	Mustela_putorius_furo
ENSPTRG00000044686	-	93	81.056	ENSMLUG00000016618	SRSF6	94	80.923	Myotis_lucifugus
ENSPTRG00000044686	-	100	100.000	ENSNGAG00000017560	Srsf6	100	100.000	Nannospalax_galili
ENSPTRG00000044686	-	56	89.474	ENSNBRG00000014709	-	58	83.696	Neolamprologus_brichardi
ENSPTRG00000044686	-	58	93.590	ENSNBRG00000001846	-	52	87.634	Neolamprologus_brichardi
ENSPTRG00000044686	-	100	100.000	ENSNLEG00000006524	SRSF6	100	100.000	Nomascus_leucogenys
ENSPTRG00000044686	-	58	97.436	ENSMEUG00000014615	SRSF6	99	92.787	Notamacropus_eugenii
ENSPTRG00000044686	-	75	96.538	ENSOPRG00000002017	-	100	96.538	Ochotona_princeps
ENSPTRG00000044686	-	100	100.000	ENSODEG00000016510	-	100	100.000	Octodon_degus
ENSPTRG00000044686	-	61	86.585	ENSONIG00000020247	-	53	84.239	Oreochromis_niloticus
ENSPTRG00000044686	-	74	58.268	ENSOCUG00000023999	-	70	63.687	Oryctolagus_cuniculus
ENSPTRG00000044686	-	83	80.392	ENSOCUG00000009785	-	98	83.784	Oryctolagus_cuniculus
ENSPTRG00000044686	-	58	94.872	ENSORLG00020017506	srsf6a	90	70.323	Oryzias_latipes_hni
ENSPTRG00000044686	-	100	96.243	ENSOGAG00000014468	SRSF6	100	96.243	Otolemur_garnettii
ENSPTRG00000044686	-	93	93.478	ENSOARG00000003117	SRSF6	94	93.231	Ovis_aries
ENSPTRG00000044686	-	90	86.084	ENSPPAG00000043131	-	100	88.350	Pan_paniscus
ENSPTRG00000044686	-	100	99.419	ENSPPAG00000034327	-	100	99.419	Pan_paniscus
ENSPTRG00000044686	-	100	97.110	ENSPPRG00000008917	SRSF6	100	97.110	Panthera_pardus
ENSPTRG00000044686	-	63	96.313	ENSPTIG00000019153	SRSF6	100	96.313	Panthera_tigris_altaica
ENSPTRG00000044686	-	100	100.000	ENSPANG00000035224	SRSF6	100	100.000	Papio_anubis
ENSPTRG00000044686	-	58	93.590	ENSPKIG00000015603	-	88	84.252	Paramormyrops_kingsleyae
ENSPTRG00000044686	-	59	77.500	ENSPKIG00000015703	-	95	61.745	Paramormyrops_kingsleyae
ENSPTRG00000044686	-	100	63.143	ENSPKIG00000018463	-	83	89.286	Paramormyrops_kingsleyae
ENSPTRG00000044686	-	88	71.753	ENSPMGG00000014963	srsf6a	55	89.130	Periophthalmus_magnuspinnatus
ENSPTRG00000044686	-	85	87.931	ENSPEMG00000022405	-	96	87.931	Peromyscus_maniculatus_bairdii
ENSPTRG00000044686	-	100	98.519	ENSPCIG00000003820	SRSF6	100	98.519	Phascolarctos_cinereus
ENSPTRG00000044686	-	58	92.308	ENSPFOG00000006437	srsf6a	50	83.158	Poecilia_formosa
ENSPTRG00000044686	-	58	92.308	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSPTRG00000044686	-	58	92.308	ENSPMEG00000006042	SRSF6	54	87.027	Poecilia_mexicana
ENSPTRG00000044686	-	59	91.139	ENSPREG00000001040	srsf6a	87	83.846	Poecilia_reticulata
ENSPTRG00000044686	-	100	99.709	ENSPPYG00000011019	SRSF6	100	99.709	Pongo_abelii
ENSPTRG00000044686	-	58	98.718	ENSPCAG00000010954	SRSF6	96	93.808	Procavia_capensis
ENSPTRG00000044686	-	100	100.000	ENSPCOG00000026364	SRSF6	100	100.000	Propithecus_coquereli
ENSPTRG00000044686	-	94	96.273	ENSPVAG00000015232	SRSF6	94	95.975	Pteropus_vampyrus
ENSPTRG00000044686	-	56	89.474	ENSPNYG00000004944	-	58	83.696	Pundamilia_nyererei
ENSPTRG00000044686	-	58	93.590	ENSPNYG00000011272	-	51	87.634	Pundamilia_nyererei
ENSPTRG00000044686	-	59	95.000	ENSPNAG00000023179	-	94	84.252	Pygocentrus_nattereri
ENSPTRG00000044686	-	100	95.930	ENSRNOG00000006380	Srsf6	100	95.930	Rattus_norvegicus
ENSPTRG00000044686	-	100	97.384	ENSRBIG00000041414	SRSF6	100	97.384	Rhinopithecus_bieti
ENSPTRG00000044686	-	100	100.000	ENSRROG00000029989	SRSF6	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000044686	-	100	100.000	ENSSBOG00000033708	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000044686	-	58	97.436	ENSSHAG00000012805	SRSF6	95	90.491	Sarcophilus_harrisii
ENSPTRG00000044686	-	92	63.037	ENSSFOG00015019681	-	53	81.959	Scleropages_formosus
ENSPTRG00000044686	-	55	93.243	ENSSFOG00015015169	SRSF6	60	89.130	Scleropages_formosus
ENSPTRG00000044686	-	56	88.158	ENSSMAG00000017447	-	55	79.891	Scophthalmus_maximus
ENSPTRG00000044686	-	59	92.500	ENSSMAG00000014861	-	95	67.969	Scophthalmus_maximus
ENSPTRG00000044686	-	63	87.059	ENSSDUG00000011036	-	90	87.059	Seriola_dumerili
ENSPTRG00000044686	-	98	61.151	ENSSDUG00000016097	srsf6a	53	87.634	Seriola_dumerili
ENSPTRG00000044686	-	63	87.059	ENSSLDG00000014858	-	90	87.059	Seriola_lalandi_dorsalis
ENSPTRG00000044686	-	98	61.871	ENSSLDG00000022841	srsf6a	54	87.634	Seriola_lalandi_dorsalis
ENSPTRG00000044686	-	75	95.385	ENSSARG00000001602	SRSF6	100	95.385	Sorex_araneus
ENSPTRG00000044686	-	100	97.037	ENSSPUG00000004967	SRSF6	100	97.037	Sphenodon_punctatus
ENSPTRG00000044686	-	63	84.706	ENSSPAG00000021913	-	86	84.706	Stegastes_partitus
ENSPTRG00000044686	-	98	61.871	ENSSPAG00000002362	srsf6a	67	86.243	Stegastes_partitus
ENSPTRG00000044686	-	100	96.532	ENSSSCG00000007362	SRSF6	100	96.532	Sus_scrofa
ENSPTRG00000044686	-	92	84.211	ENSTGUG00000003455	SRSF6	94	84.756	Taeniopygia_guttata
ENSPTRG00000044686	-	59	92.500	ENSTRUG00000021397	-	87	92.500	Takifugu_rubripes
ENSPTRG00000044686	-	87	71.096	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSPTRG00000044686	-	84	94.138	ENSTBEG00000013448	SRSF6	93	94.138	Tupaia_belangeri
ENSPTRG00000044686	-	75	95.769	ENSTTRG00000015410	SRSF6	100	95.769	Tursiops_truncatus
ENSPTRG00000044686	-	100	99.259	ENSUAMG00000003559	SRSF6	100	99.259	Ursus_americanus
ENSPTRG00000044686	-	63	96.313	ENSUMAG00000001154	SRSF6	100	96.313	Ursus_maritimus
ENSPTRG00000044686	-	75	100.000	ENSVPAG00000003016	SRSF6	74	100.000	Vicugna_pacos
ENSPTRG00000044686	-	100	78.519	ENSVVUG00000019276	-	100	78.519	Vulpes_vulpes
ENSPTRG00000044686	-	58	92.308	ENSXMAG00000021849	srsf6a	55	86.413	Xiphophorus_maculatus