EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000045513 (Gene tree)
Gene ID: 471308
Gene Symbol: -
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 44509 bases
Position: chr4:137363095-137407603
Accession: 471308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000068844	RRM_5	PF13893.6	5.5e-10	1	1
ENSPTRP00000068844	RRM_1	PF00076.22	1.6e-70	1	3
ENSPTRP00000068844	RRM_1	PF00076.22	1.6e-70	2	3
ENSPTRP00000068844	RRM_1	PF00076.22	1.6e-70	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000092512	-	1533	XM_016952222	ENSPTRP00000068844	430 (aa)	XP_016807711	A0A2I3RVX1

Gene Model

Click here to download ENSPTRG00000045513's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000045513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000045513	-	77	63.265	ENSPTRG00000028252	-	98	63.265
ENSPTRG00000045513	-	53	36.486	ENSPTRG00000021864	RBM3	81	36.232
ENSPTRG00000045513	-	56	32.051	ENSPTRG00000049417	HNRNPA1	57	32.051
ENSPTRG00000045513	-	77	71.875	ENSPTRG00000047939	PABPC1	63	71.875
ENSPTRG00000045513	-	50	31.897	ENSPTRG00000000434	-	60	31.387
ENSPTRG00000045513	-	73	31.707	ENSPTRG00000010413	ELAVL1	82	31.707
ENSPTRG00000045513	-	74	59.810	ENSPTRG00000022078	PABPC5	99	58.507
ENSPTRG00000045513	-	78	74.691	ENSPTRG00000000573	PABPC4	61	74.691
ENSPTRG00000045513	-	77	67.508	ENSPTRG00000022593	PABPC3	60	67.508
ENSPTRG00000045513	-	80	61.846	ENSPTRG00000013531	PABPC1L	98	61.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000045513	-	78	99.690	ENSG00000254535	PABPC4L	99	99.690	Homo_sapiens
ENSPTRG00000045513	-	89	93.963	ENSANAG00000017199	PABPC4L	99	93.963	Aotus_nancymaae
ENSPTRG00000045513	-	78	89.474	ENSBTAG00000046902	PABPC4L	99	89.474	Bos_taurus
ENSPTRG00000045513	-	89	93.176	ENSCJAG00000045332	PABPC4L	99	93.176	Callithrix_jacchus
ENSPTRG00000045513	-	79	73.684	ENSCAFG00020019182	-	54	73.684	Canis_lupus_dingo
ENSPTRG00000045513	-	78	89.474	ENSCHIG00000007231	PABPC4L	99	89.474	Capra_hircus
ENSPTRG00000045513	-	80	80.903	ENSCAPG00000000555	PABPC4L	100	80.903	Cavia_aperea
ENSPTRG00000045513	-	80	78.019	ENSCPOG00000033167	PABPC4L	100	78.019	Cavia_porcellus
ENSPTRG00000045513	-	89	95.013	ENSCCAG00000031681	PABPC4L	99	95.013	Cebus_capucinus
ENSPTRG00000045513	-	77	83.901	ENSCLAG00000017628	PABPC4L	99	83.901	Chinchilla_lanigera
ENSPTRG00000045513	-	78	98.142	ENSCANG00000037677	PABPC4L	99	98.142	Colobus_angolensis_palliatus
ENSPTRG00000045513	-	77	82.972	ENSCGRG00001002070	Pabpc4l	99	82.972	Cricetulus_griseus_chok1gshd
ENSPTRG00000045513	-	77	82.972	ENSCGRG00000020086	Pabpc4l	99	82.972	Cricetulus_griseus_crigri
ENSPTRG00000045513	-	79	89.443	ENSDNOG00000031077	PABPC4L	99	89.443	Dasypus_novemcinctus
ENSPTRG00000045513	-	79	90.402	ENSEASG00005007883	PABPC4L	99	90.402	Equus_asinus_asinus
ENSPTRG00000045513	-	79	90.402	ENSECAG00000031416	PABPC4L	99	90.402	Equus_caballus
ENSPTRG00000045513	-	78	90.712	ENSFCAG00000028270	PABPC4L	99	90.712	Felis_catus
ENSPTRG00000045513	-	76	84.211	ENSFDAG00000019606	PABPC4L	99	84.211	Fukomys_damarensis
ENSPTRG00000045513	-	78	99.690	ENSGGOG00000024991	PABPC4L	99	99.690	Gorilla_gorilla
ENSPTRG00000045513	-	76	83.901	ENSHGLG00000020104	PABPC4L	99	83.901	Heterocephalus_glaber_female
ENSPTRG00000045513	-	76	83.901	ENSHGLG00100020648	PABPC4L	99	83.901	Heterocephalus_glaber_male
ENSPTRG00000045513	-	77	87.963	ENSSTOG00000019472	PABPC4L	99	87.963	Ictidomys_tridecemlineatus
ENSPTRG00000045513	-	77	83.282	ENSJJAG00000004090	Pabpc4l	99	83.282	Jaculus_jaculus
ENSPTRG00000045513	-	77	83.591	ENSMAUG00000016313	Pabpc4l	99	83.591	Mesocricetus_auratus
ENSPTRG00000045513	-	80	94.427	ENSMICG00000029683	PABPC4L	99	94.427	Microcebus_murinus
ENSPTRG00000045513	-	80	84.520	ENSMOCG00000007551	Pabpc4l	99	84.520	Microtus_ochrogaster
ENSPTRG00000045513	-	78	80.495	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	Mus_caroli
ENSPTRG00000045513	-	78	80.805	ENSMUSG00000090919	Pabpc4l	100	80.814	Mus_musculus
ENSPTRG00000045513	-	78	81.115	MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	Mus_pahari
ENSPTRG00000045513	-	78	80.186	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	Mus_spretus
ENSPTRG00000045513	-	76	78.947	ENSMLUG00000008254	PABPC4L	99	78.947	Myotis_lucifugus
ENSPTRG00000045513	-	81	87.307	ENSNGAG00000001502	Pabpc4l	99	87.307	Nannospalax_galili
ENSPTRG00000045513	-	78	99.690	ENSNLEG00000019300	PABPC4L	99	99.690	Nomascus_leucogenys
ENSPTRG00000045513	-	79	86.997	ENSOGAG00000026166	PABPC4L	99	86.997	Otolemur_garnettii
ENSPTRG00000045513	-	82	100.000	ENSPPAG00000043745	PABPC4L	100	100.000	Pan_paniscus
ENSPTRG00000045513	-	78	90.093	ENSPPRG00000018628	PABPC4L	99	90.093	Panthera_pardus
ENSPTRG00000045513	-	78	90.712	ENSPTIG00000010106	PABPC4L	99	90.712	Panthera_tigris_altaica
ENSPTRG00000045513	-	80	83.282	ENSPEMG00000012565	Pabpc4l	99	83.282	Peromyscus_maniculatus_bairdii
ENSPTRG00000045513	-	80	94.427	ENSPCOG00000025578	PABPC4L	99	94.427	Propithecus_coquereli
ENSPTRG00000045513	-	77	81.424	ENSRNOG00000029749	Pabpc4l	99	81.424	Rattus_norvegicus
ENSPTRG00000045513	-	78	97.523	ENSRBIG00000030229	PABPC4L	99	97.523	Rhinopithecus_bieti
ENSPTRG00000045513	-	78	97.523	ENSRROG00000020367	PABPC4L	99	97.523	Rhinopithecus_roxellana
ENSPTRG00000045513	-	78	94.427	ENSSBOG00000016382	PABPC4L	99	94.427	Saimiri_boliviensis_boliviensis
ENSPTRG00000045513	-	77	82.972	ENSSSCG00000009067	PABPC4L	96	82.972	Sus_scrofa
ENSPTRG00000045513	-	78	89.474	ENSUAMG00000001289	PABPC4L	99	89.474	Ursus_americanus
ENSPTRG00000045513	-	78	89.474	ENSUMAG00000014887	PABPC4L	99	89.474	Ursus_maritimus
ENSPTRG00000045513	-	74	76.074	ENSVVUG00000011060	-	74	76.074	Vulpes_vulpes