EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000049282 (Gene tree)
Gene ID: 107968716
Gene Symbol: -
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 33427 bases
Position: chrKV420728.1:41378-74804
Accession: 107968716
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000082559	EST1	PF10374.9	4.2e-24	1	1
ENSPTRP00000086077	EST1	PF10374.9	1.1e-23	1	1
ENSPTRP00000086077	EST1_DNA_bind	PF10373.9	4.9e-40	1	2
ENSPTRP00000086077	EST1_DNA_bind	PF10373.9	4.9e-40	2	2
ENSPTRP00000082559	EST1_DNA_bind	PF10373.9	2.8e-35	1	2
ENSPTRP00000082559	EST1_DNA_bind	PF10373.9	2.8e-35	2	2
ENSPTRP00000086077	PIN_4	PF13638.6	3.5e-05	1	1
ENSPTRP00000082559	PIN_4	PF13638.6	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000083508	-	4564	XM_009434394	ENSPTRP00000086077	1016 (aa)	XP_009432669	H2R0Y6
ENSPTRT00000110076	-	3887	-	ENSPTRP00000082559	1038 (aa)	-	A0A2I3SZY8

Gene Model

Click here to download ENSPTRG00000049282's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000049282's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000049282	-	100	100.000	ENSPTRG00000023925	SMG5	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000049282	-	100	99.606	ENSG00000198952	SMG5	100	99.606	Homo_sapiens
ENSPTRG00000049282	-	99	67.549	ENSAPOG00000019690	smg5	92	76.869	Acanthochromis_polyacanthus
ENSPTRG00000049282	-	98	92.749	ENSAMEG00000014458	SMG5	100	92.749	Ailuropoda_melanoleuca
ENSPTRG00000049282	-	99	64.847	ENSACIG00000001353	smg5	99	66.571	Amphilophus_citrinellus
ENSPTRG00000049282	-	98	64.631	ENSAOCG00000019483	smg5	86	78.310	Amphiprion_ocellaris
ENSPTRG00000049282	-	98	66.269	ENSAPEG00000022949	smg5	98	66.235	Amphiprion_percula
ENSPTRG00000049282	-	99	65.800	ENSATEG00000005348	smg5	99	67.216	Anabas_testudineus
ENSPTRG00000049282	-	98	78.829	ENSAPLG00000010263	SMG5	92	94.828	Anas_platyrhynchos
ENSPTRG00000049282	-	100	98.130	ENSANAG00000032899	SMG5	100	98.130	Aotus_nancymaae
ENSPTRG00000049282	-	99	64.491	ENSACLG00000009311	smg5	99	66.025	Astatotilapia_calliptera
ENSPTRG00000049282	-	83	78.797	ENSAMXG00000024616	smg5	87	78.797	Astyanax_mexicanus
ENSPTRG00000049282	-	100	96.063	ENSBTAG00000009435	SMG5	100	96.063	Bos_taurus
ENSPTRG00000049282	-	99	44.391	ENSBTAG00000021747	-	99	43.520	Bos_taurus
ENSPTRG00000049282	-	100	98.130	ENSCJAG00000005684	SMG5	100	98.130	Callithrix_jacchus
ENSPTRG00000049282	-	100	94.488	ENSCAFG00000016839	SMG5	100	93.799	Canis_familiaris
ENSPTRG00000049282	-	100	94.488	ENSCAFG00020006061	SMG5	100	93.799	Canis_lupus_dingo
ENSPTRG00000049282	-	99	45.005	ENSCHIG00000006323	-	99	43.652	Capra_hircus
ENSPTRG00000049282	-	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSPTRG00000049282	-	100	97.050	ENSTSYG00000004099	SMG5	100	97.050	Carlito_syrichta
ENSPTRG00000049282	-	97	74.544	ENSCAPG00000003631	SMG5	100	75.182	Cavia_aperea
ENSPTRG00000049282	-	100	95.874	ENSCPOG00000015696	SMG5	100	95.580	Cavia_porcellus
ENSPTRG00000049282	-	100	98.130	ENSCCAG00000027409	SMG5	100	98.130	Cebus_capucinus
ENSPTRG00000049282	-	100	99.213	ENSCATG00000030539	SMG5	100	99.213	Cercocebus_atys
ENSPTRG00000049282	-	100	96.365	ENSCLAG00000003983	SMG5	100	96.365	Chinchilla_lanigera
ENSPTRG00000049282	-	100	99.114	ENSCSAG00000002120	SMG5	100	99.114	Chlorocebus_sabaeus
ENSPTRG00000049282	-	54	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSPTRG00000049282	-	94	78.702	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSPTRG00000049282	-	93	35.191	ENSCING00000008706	-	99	35.216	Ciona_intestinalis
ENSPTRG00000049282	-	100	94.980	ENSCANG00000029208	SMG5	100	94.980	Colobus_angolensis_palliatus
ENSPTRG00000049282	-	100	92.731	ENSCGRG00001006336	Smg5	100	92.436	Cricetulus_griseus_chok1gshd
ENSPTRG00000049282	-	98	92.757	ENSCGRG00000005111	Smg5	100	92.447	Cricetulus_griseus_crigri
ENSPTRG00000049282	-	99	65.403	ENSCSEG00000014220	smg5	92	77.541	Cynoglossus_semilaevis
ENSPTRG00000049282	-	99	60.819	ENSCVAG00000000529	smg5	99	61.516	Cyprinodon_variegatus
ENSPTRG00000049282	-	84	80.229	ENSDARG00000041481	smg5	86	80.229	Danio_rerio
ENSPTRG00000049282	-	92	36.786	ENSDNOG00000039862	-	100	35.344	Dasypus_novemcinctus
ENSPTRG00000049282	-	100	91.831	ENSDNOG00000000051	SMG5	100	91.831	Dasypus_novemcinctus
ENSPTRG00000049282	-	100	94.204	ENSDORG00000010382	Smg5	100	93.517	Dipodomys_ordii
ENSPTRG00000049282	-	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSPTRG00000049282	-	82	97.087	ENSETEG00000010336	SMG5	88	97.087	Echinops_telfairi
ENSPTRG00000049282	-	90	46.709	ENSEBUG00000003739	smg5	98	46.324	Eptatretus_burgeri
ENSPTRG00000049282	-	100	97.244	ENSEASG00005019122	SMG5	100	97.244	Equus_asinus_asinus
ENSPTRG00000049282	-	100	97.244	ENSECAG00000001389	SMG5	100	97.244	Equus_caballus
ENSPTRG00000049282	-	72	97.983	ENSEEUG00000012690	SMG5	73	97.983	Erinaceus_europaeus
ENSPTRG00000049282	-	88	78.977	ENSELUG00000012585	smg5	87	79.261	Esox_lucius
ENSPTRG00000049282	-	100	93.996	ENSFCAG00000011783	SMG5	100	93.215	Felis_catus
ENSPTRG00000049282	-	58	81.636	ENSFALG00000001166	-	99	81.742	Ficedula_albicollis
ENSPTRG00000049282	-	98	93.152	ENSFDAG00000017388	SMG5	100	93.051	Fukomys_damarensis
ENSPTRG00000049282	-	97	62.059	ENSFHEG00000013939	smg5	95	68.301	Fundulus_heteroclitus
ENSPTRG00000049282	-	88	74.728	ENSGMOG00000007310	smg5	92	76.376	Gadus_morhua
ENSPTRG00000049282	-	99	77.714	ENSGALG00000029918	-	100	77.419	Gallus_gallus
ENSPTRG00000049282	-	86	75.339	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSPTRG00000049282	-	83	76.880	ENSGACG00000013142	smg5	87	76.880	Gasterosteus_aculeatus
ENSPTRG00000049282	-	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSPTRG00000049282	-	100	99.311	ENSGGOG00000010932	SMG5	100	99.311	Gorilla_gorilla
ENSPTRG00000049282	-	99	64.211	ENSHBUG00000008654	smg5	86	78.371	Haplochromis_burtoni
ENSPTRG00000049282	-	100	93.026	ENSHGLG00000019152	SMG5	100	93.222	Heterocephalus_glaber_female
ENSPTRG00000049282	-	90	93.100	ENSHGLG00100015948	SMG5	99	93.319	Heterocephalus_glaber_male
ENSPTRG00000049282	-	86	73.105	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSPTRG00000049282	-	83	79.656	ENSIPUG00000006624	Smg5	87	79.656	Ictalurus_punctatus
ENSPTRG00000049282	-	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSPTRG00000049282	-	100	92.836	ENSJJAG00000022763	Smg5	100	92.640	Jaculus_jaculus
ENSPTRG00000049282	-	83	77.183	ENSKMAG00000014586	smg5	86	78.652	Kryptolebias_marmoratus
ENSPTRG00000049282	-	99	66.056	ENSLBEG00000002145	smg5	92	78.066	Labrus_bergylta
ENSPTRG00000049282	-	100	65.052	ENSLACG00000010521	SMG5	90	81.065	Latimeria_chalumnae
ENSPTRG00000049282	-	96	78.404	ENSLOCG00000008380	smg5	92	78.436	Lepisosteus_oculatus
ENSPTRG00000049282	-	100	94.587	ENSLAFG00000006241	SMG5	100	94.587	Loxodonta_africana
ENSPTRG00000049282	-	100	99.114	ENSMFAG00000045357	SMG5	100	99.114	Macaca_fascicularis
ENSPTRG00000049282	-	100	99.016	ENSMMUG00000000090	SMG5	100	99.016	Macaca_mulatta
ENSPTRG00000049282	-	100	99.016	ENSMNEG00000044425	SMG5	100	99.016	Macaca_nemestrina
ENSPTRG00000049282	-	100	92.843	ENSMLEG00000041192	SMG5	100	92.843	Mandrillus_leucophaeus
ENSPTRG00000049282	-	86	78.531	ENSMAMG00000010683	smg5	87	78.846	Mastacembelus_armatus
ENSPTRG00000049282	-	63	58.709	ENSMZEG00005016543	smg5	100	59.125	Maylandia_zebra
ENSPTRG00000049282	-	99	63.645	ENSMZEG00005015815	smg5	99	64.689	Maylandia_zebra
ENSPTRG00000049282	-	55	45.534	ENSMAUG00000000043	-	96	44.618	Mesocricetus_auratus
ENSPTRG00000049282	-	100	91.945	ENSMAUG00000010381	Smg5	100	91.749	Mesocricetus_auratus
ENSPTRG00000049282	-	100	97.441	ENSMICG00000002257	SMG5	100	97.441	Microcebus_murinus
ENSPTRG00000049282	-	100	91.471	ENSMOCG00000016590	Smg5	100	91.078	Microtus_ochrogaster
ENSPTRG00000049282	-	86	73.446	ENSMMOG00000017199	smg5	87	73.446	Mola_mola
ENSPTRG00000049282	-	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSPTRG00000049282	-	87	90.203	ENSMODG00000016901	SMG5	98	90.653	Monodelphis_domestica
ENSPTRG00000049282	-	97	34.990	ENSMODG00000004511	-	99	34.257	Monodelphis_domestica
ENSPTRG00000049282	-	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSPTRG00000049282	-	75	39.633	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSPTRG00000049282	-	86	75.070	ENSMALG00000010375	smg5	86	75.070	Monopterus_albus
ENSPTRG00000049282	-	100	92.436	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSPTRG00000049282	-	100	92.633	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSPTRG00000049282	-	100	92.247	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSPTRG00000049282	-	100	92.436	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSPTRG00000049282	-	94	92.947	ENSMPUG00000004546	SMG5	100	92.211	Mustela_putorius_furo
ENSPTRG00000049282	-	100	95.597	ENSMLUG00000008518	SMG5	100	95.597	Myotis_lucifugus
ENSPTRG00000049282	-	98	44.779	ENSNGAG00000012101	-	98	44.588	Nannospalax_galili
ENSPTRG00000049282	-	100	93.904	ENSNGAG00000020706	Smg5	100	93.609	Nannospalax_galili
ENSPTRG00000049282	-	97	63.063	ENSNBRG00000004332	smg5	98	65.196	Neolamprologus_brichardi
ENSPTRG00000049282	-	100	99.016	ENSNLEG00000012439	SMG5	100	99.016	Nomascus_leucogenys
ENSPTRG00000049282	-	100	88.201	ENSMEUG00000012834	SMG5	91	96.839	Notamacropus_eugenii
ENSPTRG00000049282	-	100	94.390	ENSOPRG00000009152	SMG5	100	94.390	Ochotona_princeps
ENSPTRG00000049282	-	100	95.669	ENSODEG00000012237	SMG5	100	95.669	Octodon_degus
ENSPTRG00000049282	-	83	76.685	ENSONIG00000008632	smg5	92	78.118	Oreochromis_niloticus
ENSPTRG00000049282	-	98	95.565	ENSOCUG00000012886	SMG5	100	95.565	Oryctolagus_cuniculus
ENSPTRG00000049282	-	89	40.700	ENSOCUG00000023338	-	99	40.591	Oryctolagus_cuniculus
ENSPTRG00000049282	-	91	76.667	ENSORLG00000016239	smg5	87	77.247	Oryzias_latipes
ENSPTRG00000049282	-	99	64.230	ENSORLG00020013127	smg5	99	65.887	Oryzias_latipes_hni
ENSPTRG00000049282	-	99	64.140	ENSORLG00015019014	smg5	88	76.685	Oryzias_latipes_hsok
ENSPTRG00000049282	-	65	77.904	ENSOMEG00000021330	smg5	78	77.904	Oryzias_melastigma
ENSPTRG00000049282	-	100	95.177	ENSOGAG00000004966	SMG5	100	95.177	Otolemur_garnettii
ENSPTRG00000049282	-	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSPTRG00000049282	-	99	44.673	ENSOARG00000011963	-	99	43.665	Ovis_aries
ENSPTRG00000049282	-	100	99.803	ENSPPAG00000011996	SMG5	100	99.803	Pan_paniscus
ENSPTRG00000049282	-	98	93.851	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSPTRG00000049282	-	99	85.672	ENSPTIG00000007892	SMG5	98	85.526	Panthera_tigris_altaica
ENSPTRG00000049282	-	100	99.213	ENSPANG00000011201	SMG5	100	99.213	Papio_anubis
ENSPTRG00000049282	-	86	78.797	ENSPKIG00000009402	smg5	86	79.083	Paramormyrops_kingsleyae
ENSPTRG00000049282	-	98	80.834	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSPTRG00000049282	-	86	76.136	ENSPMGG00000010465	smg5	87	76.136	Periophthalmus_magnuspinnatus
ENSPTRG00000049282	-	56	46.060	ENSPEMG00000010022	-	95	45.017	Peromyscus_maniculatus_bairdii
ENSPTRG00000049282	-	100	93.026	ENSPEMG00000001819	Smg5	100	92.731	Peromyscus_maniculatus_bairdii
ENSPTRG00000049282	-	99	49.324	ENSPMAG00000000410	smg5	90	62.963	Petromyzon_marinus
ENSPTRG00000049282	-	100	89.686	ENSPCIG00000018938	SMG5	100	90.079	Phascolarctos_cinereus
ENSPTRG00000049282	-	83	77.465	ENSPFOG00000010191	smg5	86	78.371	Poecilia_formosa
ENSPTRG00000049282	-	83	77.465	ENSPLAG00000009332	smg5	86	78.371	Poecilia_latipinna
ENSPTRG00000049282	-	99	65.610	ENSPMEG00000014105	smg5	86	78.371	Poecilia_mexicana
ENSPTRG00000049282	-	93	75.566	ENSPREG00000017713	smg5	86	78.371	Poecilia_reticulata
ENSPTRG00000049282	-	100	99.508	ENSPPYG00000000723	SMG5	100	99.508	Pongo_abelii
ENSPTRG00000049282	-	75	97.790	ENSPCAG00000008412	SMG5	81	99.441	Procavia_capensis
ENSPTRG00000049282	-	100	97.343	ENSPCOG00000004741	SMG5	100	97.343	Propithecus_coquereli
ENSPTRG00000049282	-	100	86.122	ENSPVAG00000016748	SMG5	100	86.122	Pteropus_vampyrus
ENSPTRG00000049282	-	83	76.404	ENSPNYG00000013397	smg5	86	78.328	Pundamilia_nyererei
ENSPTRG00000049282	-	88	78.797	ENSPNAG00000028363	smg5	86	78.797	Pygocentrus_nattereri
ENSPTRG00000049282	-	100	92.633	ENSRNOG00000019590	Smg5	100	92.338	Rattus_norvegicus
ENSPTRG00000049282	-	100	98.917	ENSRBIG00000027428	SMG5	100	98.917	Rhinopithecus_bieti
ENSPTRG00000049282	-	100	98.819	ENSRROG00000030035	SMG5	100	98.819	Rhinopithecus_roxellana
ENSPTRG00000049282	-	100	98.130	ENSSBOG00000033339	SMG5	100	98.130	Saimiri_boliviensis_boliviensis
ENSPTRG00000049282	-	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSPTRG00000049282	-	99	34.294	ENSSHAG00000009572	-	80	42.998	Sarcophilus_harrisii
ENSPTRG00000049282	-	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSPTRG00000049282	-	98	89.289	ENSSHAG00000014163	SMG5	100	89.690	Sarcophilus_harrisii
ENSPTRG00000049282	-	99	66.440	ENSSFOG00015024175	smg5	99	66.341	Scleropages_formosus
ENSPTRG00000049282	-	99	60.781	ENSSMAG00000013059	smg5	86	78.090	Scophthalmus_maximus
ENSPTRG00000049282	-	83	75.766	ENSSDUG00000007122	smg5	92	76.636	Seriola_dumerili
ENSPTRG00000049282	-	83	76.620	ENSSLDG00000011418	smg5	86	77.465	Seriola_lalandi_dorsalis
ENSPTRG00000049282	-	90	81.134	ENSSARG00000012484	SMG5	100	81.134	Sorex_araneus
ENSPTRG00000049282	-	94	77.508	ENSSPUG00000002260	SMG5	100	76.596	Sphenodon_punctatus
ENSPTRG00000049282	-	91	76.347	ENSSPAG00000014266	smg5	99	65.255	Stegastes_partitus
ENSPTRG00000049282	-	99	75.074	ENSSSCG00000039308	-	100	75.271	Sus_scrofa
ENSPTRG00000049282	-	100	97.146	ENSSSCG00000006490	-	100	97.146	Sus_scrofa
ENSPTRG00000049282	-	99	80.415	ENSTGUG00000003748	-	100	80.176	Taeniopygia_guttata
ENSPTRG00000049282	-	99	64.672	ENSTRUG00000012580	smg5	87	77.586	Takifugu_rubripes
ENSPTRG00000049282	-	99	65.407	ENSTNIG00000010303	smg5	87	77.586	Tetraodon_nigroviridis
ENSPTRG00000049282	-	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSPTRG00000049282	-	100	91.831	ENSTTRG00000001401	SMG5	100	91.831	Tursiops_truncatus
ENSPTRG00000049282	-	100	93.602	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSPTRG00000049282	-	98	89.146	ENSUMAG00000018041	SMG5	97	88.442	Ursus_maritimus
ENSPTRG00000049282	-	98	86.983	ENSVPAG00000009446	SMG5	99	86.983	Vicugna_pacos
ENSPTRG00000049282	-	100	94.390	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSPTRG00000049282	-	77	65.700	ENSXETG00000033791	SMG5	99	64.943	Xenopus_tropicalis
ENSPTRG00000049282	-	76	75.113	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSPTRG00000049282	-	93	74.887	ENSXMAG00000013499	smg5	99	65.865	Xiphophorus_maculatus