EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000049288 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 16991 bases
Position: chr8:147197464-147214454
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000075129	CPSF_A	PF03178.15	1.3e-91	1	1
ENSPTRP00000062235	CPSF_A	PF03178.15	3.2e-87	1	1
ENSPTRP00000075838	CPSF_A	PF03178.15	1.1e-33	1	1
ENSPTRP00000061942	CPSF_A	PF03178.15	2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000105884	-	615	-	ENSPTRP00000075838	204 (aa)	-	A0A2I3SG14
ENSPTRT00000095708	-	4287	-	ENSPTRP00000062235	1428 (aa)	-	A0A2I3RC63
ENSPTRT00000107008	-	4329	-	ENSPTRP00000075129	1442 (aa)	-	K7DEQ1
ENSPTRT00000077828	-	447	-	ENSPTRP00000085479	148 (aa)	-	A0A2I3T9B6
ENSPTRT00000098943	-	651	-	ENSPTRP00000061942	216 (aa)	-	A0A2I3RUA7

Gene Model

Click here to download ENSPTRG00000049288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000049288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000049288	-	100	100.000	ENSPTRG00000051253	-	100	100.000
ENSPTRG00000049288	-	100	62.963	ENSPTRG00000052516	-	100	69.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000049288	-	100	99.792	ENSG00000071894	CPSF1	100	99.792	Homo_sapiens
ENSPTRG00000049288	-	100	81.900	ENSAPOG00000019621	cpsf1	100	77.973	Acanthochromis_polyacanthus
ENSPTRG00000049288	-	97	95.068	ENSAMEG00000005557	CPSF1	100	95.068	Ailuropoda_melanoleuca
ENSPTRG00000049288	-	100	80.543	ENSACIG00000006112	cpsf1	100	77.993	Amphilophus_citrinellus
ENSPTRG00000049288	-	100	81.900	ENSAOCG00000007120	cpsf1	100	79.325	Amphiprion_ocellaris
ENSPTRG00000049288	-	100	81.900	ENSAPEG00000005755	cpsf1	100	79.600	Amphiprion_percula
ENSPTRG00000049288	-	100	81.448	ENSATEG00000011097	cpsf1	100	78.018	Anabas_testudineus
ENSPTRG00000049288	-	93	81.771	ENSACAG00000009655	CPSF1	100	81.771	Anolis_carolinensis
ENSPTRG00000049288	-	100	99.168	ENSANAG00000036514	CPSF1	100	99.168	Aotus_nancymaae
ENSPTRG00000049288	-	100	80.543	ENSACLG00000012231	cpsf1	99	78.677	Astatotilapia_calliptera
ENSPTRG00000049288	-	100	80.543	ENSAMXG00000008485	cpsf1	100	74.153	Astyanax_mexicanus
ENSPTRG00000049288	-	100	94.490	ENSBTAG00000008355	CPSF1	100	94.672	Bos_taurus
ENSPTRG00000049288	-	99	34.361	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSPTRG00000049288	-	100	98.960	ENSCJAG00000021421	CPSF1	100	98.960	Callithrix_jacchus
ENSPTRG00000049288	-	97	96.426	ENSCAFG00000001600	CPSF1	100	96.751	Canis_familiaris
ENSPTRG00000049288	-	100	96.678	ENSCAFG00020020821	CPSF1	100	96.678	Canis_lupus_dingo
ENSPTRG00000049288	-	100	90.834	ENSCHIG00000015833	CPSF1	100	90.834	Capra_hircus
ENSPTRG00000049288	-	100	97.989	ENSTSYG00000028560	CPSF1	99	99.123	Carlito_syrichta
ENSPTRG00000049288	-	97	95.269	ENSCAPG00000014921	CPSF1	99	95.269	Cavia_aperea
ENSPTRG00000049288	-	100	94.941	ENSCPOG00000011448	CPSF1	100	94.941	Cavia_porcellus
ENSPTRG00000049288	-	100	99.098	ENSCCAG00000037658	CPSF1	100	99.098	Cebus_capucinus
ENSPTRG00000049288	-	100	99.376	ENSCATG00000037234	CPSF1	100	99.376	Cercocebus_atys
ENSPTRG00000049288	-	100	96.602	ENSCLAG00000012166	CPSF1	100	96.602	Chinchilla_lanigera
ENSPTRG00000049288	-	100	99.307	ENSCSAG00000008502	CPSF1	100	99.307	Chlorocebus_sabaeus
ENSPTRG00000049288	-	99	87.614	ENSCPBG00000018910	CPSF1	96	87.614	Chrysemys_picta_bellii
ENSPTRG00000049288	-	96	48.494	ENSCING00000000514	-	100	48.422	Ciona_intestinalis
ENSPTRG00000049288	-	99	47.835	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSPTRG00000049288	-	100	98.529	ENSCANG00000032760	CPSF1	100	98.529	Colobus_angolensis_palliatus
ENSPTRG00000049288	-	100	96.463	ENSCGRG00001016344	Cpsf1	100	96.463	Cricetulus_griseus_chok1gshd
ENSPTRG00000049288	-	100	94.383	ENSCGRG00000003118	Cpsf1	100	94.383	Cricetulus_griseus_crigri
ENSPTRG00000049288	-	100	78.281	ENSCSEG00000013464	cpsf1	100	77.424	Cynoglossus_semilaevis
ENSPTRG00000049288	-	100	81.951	ENSCVAG00000014059	cpsf1	100	81.951	Cyprinodon_variegatus
ENSPTRG00000049288	-	100	80.090	ENSDARG00000034178	cpsf1	100	79.752	Danio_rerio
ENSPTRG00000049288	-	57	95.942	ENSDNOG00000043654	CPSF1	94	95.942	Dasypus_novemcinctus
ENSPTRG00000049288	-	97	96.057	ENSDORG00000006278	Cpsf1	99	96.057	Dipodomys_ordii
ENSPTRG00000049288	-	100	45.662	FBgn0024698	Cpsf160	100	45.559	Drosophila_melanogaster
ENSPTRG00000049288	-	80	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSPTRG00000049288	-	91	64.677	ENSEBUG00000006844	-	97	74.541	Eptatretus_burgeri
ENSPTRG00000049288	-	100	97.301	ENSEASG00005010774	CPSF1	100	97.301	Equus_asinus_asinus
ENSPTRG00000049288	-	100	97.301	ENSECAG00000022209	CPSF1	100	97.301	Equus_caballus
ENSPTRG00000049288	-	100	94.671	ENSEEUG00000000471	CPSF1	100	94.671	Erinaceus_europaeus
ENSPTRG00000049288	-	100	81.364	ENSELUG00000012271	cpsf1	100	78.767	Esox_lucius
ENSPTRG00000049288	-	100	96.671	ENSFDAG00000016060	CPSF1	100	96.671	Fukomys_damarensis
ENSPTRG00000049288	-	100	76.997	ENSFHEG00000016801	cpsf1	100	76.860	Fundulus_heteroclitus
ENSPTRG00000049288	-	100	80.093	ENSGMOG00000000796	cpsf1	100	78.069	Gadus_morhua
ENSPTRG00000049288	-	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSPTRG00000049288	-	100	79.630	ENSGACG00000008703	cpsf1	100	78.680	Gasterosteus_aculeatus
ENSPTRG00000049288	-	100	83.748	ENSGAGG00000004276	CPSF1	98	87.500	Gopherus_agassizii
ENSPTRG00000049288	-	100	99.861	ENSGGOG00000016185	CPSF1	100	99.861	Gorilla_gorilla
ENSPTRG00000049288	-	100	64.352	ENSGGOG00000040487	-	100	70.833	Gorilla_gorilla
ENSPTRG00000049288	-	100	80.543	ENSHBUG00000018900	cpsf1	100	79.377	Haplochromis_burtoni
ENSPTRG00000049288	-	100	96.533	ENSHGLG00000016139	CPSF1	100	96.533	Heterocephalus_glaber_female
ENSPTRG00000049288	-	100	96.463	ENSHGLG00100009750	CPSF1	100	96.463	Heterocephalus_glaber_male
ENSPTRG00000049288	-	100	79.630	ENSHCOG00000018509	cpsf1	100	77.001	Hippocampus_comes
ENSPTRG00000049288	-	100	81.900	ENSIPUG00000011259	cpsf1	100	76.770	Ictalurus_punctatus
ENSPTRG00000049288	-	97	96.786	ENSSTOG00000009957	CPSF1	99	96.786	Ictidomys_tridecemlineatus
ENSPTRG00000049288	-	100	96.325	ENSJJAG00000023002	Cpsf1	100	96.325	Jaculus_jaculus
ENSPTRG00000049288	-	100	77.376	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSPTRG00000049288	-	100	80.090	ENSLBEG00000003601	cpsf1	100	77.686	Labrus_bergylta
ENSPTRG00000049288	-	100	82.805	ENSLACG00000000233	CPSF1	92	81.490	Latimeria_chalumnae
ENSPTRG00000049288	-	100	82.960	ENSLOCG00000008484	cpsf1	100	78.399	Lepisosteus_oculatus
ENSPTRG00000049288	-	97	95.708	ENSLAFG00000022601	CPSF1	100	95.708	Loxodonta_africana
ENSPTRG00000049288	-	100	99.376	ENSMFAG00000037013	CPSF1	100	99.376	Macaca_fascicularis
ENSPTRG00000049288	-	100	99.445	ENSMMUG00000007380	CPSF1	100	99.445	Macaca_mulatta
ENSPTRG00000049288	-	100	99.020	ENSMNEG00000043564	CPSF1	100	99.570	Macaca_nemestrina
ENSPTRG00000049288	-	100	99.376	ENSMLEG00000043010	CPSF1	100	99.376	Mandrillus_leucophaeus
ENSPTRG00000049288	-	100	81.448	ENSMAMG00000003803	cpsf1	100	78.176	Mastacembelus_armatus
ENSPTRG00000049288	-	100	80.543	ENSMZEG00005001168	cpsf1	100	77.232	Maylandia_zebra
ENSPTRG00000049288	-	100	96.255	ENSMAUG00000003601	Cpsf1	100	96.255	Mesocricetus_auratus
ENSPTRG00000049288	-	100	97.712	ENSMICG00000015767	CPSF1	100	97.712	Microcebus_murinus
ENSPTRG00000049288	-	100	96.463	ENSMOCG00000022758	Cpsf1	100	96.463	Microtus_ochrogaster
ENSPTRG00000049288	-	100	80.090	ENSMMOG00000021245	cpsf1	100	78.838	Mola_mola
ENSPTRG00000049288	-	100	93.034	ENSMODG00000010755	CPSF1	100	93.034	Monodelphis_domestica
ENSPTRG00000049288	-	100	80.995	ENSMALG00000020545	cpsf1	100	77.740	Monopterus_albus
ENSPTRG00000049288	-	100	96.671	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.671	Mus_caroli
ENSPTRG00000049288	-	100	96.602	ENSMUSG00000034022	Cpsf1	100	96.602	Mus_musculus
ENSPTRG00000049288	-	100	96.533	MGP_PahariEiJ_G0019946	Cpsf1	100	96.533	Mus_pahari
ENSPTRG00000049288	-	100	96.602	MGP_SPRETEiJ_G0020839	Cpsf1	100	96.602	Mus_spretus
ENSPTRG00000049288	-	94	95.926	ENSMPUG00000006419	CPSF1	93	95.926	Mustela_putorius_furo
ENSPTRG00000049288	-	78	97.484	ENSMLUG00000000667	-	100	96.667	Myotis_lucifugus
ENSPTRG00000049288	-	100	96.325	ENSNGAG00000022460	Cpsf1	100	96.325	Nannospalax_galili
ENSPTRG00000049288	-	100	81.019	ENSNBRG00000000813	cpsf1	100	75.035	Neolamprologus_brichardi
ENSPTRG00000049288	-	100	98.529	ENSNLEG00000010633	-	100	98.529	Nomascus_leucogenys
ENSPTRG00000049288	-	84	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSPTRG00000049288	-	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSPTRG00000049288	-	100	96.741	ENSODEG00000013995	CPSF1	100	96.741	Octodon_degus
ENSPTRG00000049288	-	100	80.090	ENSONIG00000007676	cpsf1	100	79.654	Oreochromis_niloticus
ENSPTRG00000049288	-	58	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSPTRG00000049288	-	100	78.733	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSPTRG00000049288	-	100	78.733	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSPTRG00000049288	-	100	78.733	ENSORLG00015009979	cpsf1	100	77.430	Oryzias_latipes_hsok
ENSPTRG00000049288	-	100	79.186	ENSOMEG00000011849	cpsf1	100	77.536	Oryzias_melastigma
ENSPTRG00000049288	-	100	97.573	ENSOGAG00000000315	CPSF1	100	97.573	Otolemur_garnettii
ENSPTRG00000049288	-	100	100.000	ENSPPAG00000019280	CPSF1	100	100.000	Pan_paniscus
ENSPTRG00000049288	-	100	98.529	ENSPANG00000015005	CPSF1	100	99.426	Papio_anubis
ENSPTRG00000049288	-	100	83.258	ENSPKIG00000002582	cpsf1	100	81.014	Paramormyrops_kingsleyae
ENSPTRG00000049288	-	100	77.376	ENSPMGG00000022177	-	100	84.259	Periophthalmus_magnuspinnatus
ENSPTRG00000049288	-	100	92.966	ENSPCIG00000009035	CPSF1	100	92.966	Phascolarctos_cinereus
ENSPTRG00000049288	-	100	77.828	ENSPFOG00000012870	cpsf1	100	76.387	Poecilia_formosa
ENSPTRG00000049288	-	100	77.376	ENSPREG00000016307	cpsf1	100	76.133	Poecilia_reticulata
ENSPTRG00000049288	-	100	91.401	ENSPPYG00000018973	CPSF1	100	91.401	Pongo_abelii
ENSPTRG00000049288	-	100	86.364	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSPTRG00000049288	-	100	94.608	ENSPCOG00000020001	CPSF1	100	94.608	Propithecus_coquereli
ENSPTRG00000049288	-	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSPTRG00000049288	-	100	80.543	ENSPNYG00000004906	cpsf1	100	78.347	Pundamilia_nyererei
ENSPTRG00000049288	-	100	75.483	ENSPNAG00000024395	cpsf1	100	75.483	Pygocentrus_nattereri
ENSPTRG00000049288	-	100	96.602	ENSRNOG00000030705	Cpsf1	100	96.602	Rattus_norvegicus
ENSPTRG00000049288	-	100	99.376	ENSRBIG00000044907	CPSF1	100	99.376	Rhinopithecus_bieti
ENSPTRG00000049288	-	100	99.307	ENSRROG00000044861	CPSF1	100	99.307	Rhinopithecus_roxellana
ENSPTRG00000049288	-	97	99.067	ENSSBOG00000027177	CPSF1	100	99.067	Saimiri_boliviensis_boliviensis
ENSPTRG00000049288	-	100	92.828	ENSSHAG00000006500	CPSF1	100	92.828	Sarcophilus_harrisii
ENSPTRG00000049288	-	100	83.710	ENSSFOG00015004606	cpsf1	100	81.164	Scleropages_formosus
ENSPTRG00000049288	-	100	81.900	ENSSMAG00000020547	cpsf1	100	78.011	Scophthalmus_maximus
ENSPTRG00000049288	-	100	81.448	ENSSDUG00000001100	cpsf1	100	79.198	Seriola_dumerili
ENSPTRG00000049288	-	100	81.448	ENSSLDG00000003619	cpsf1	100	79.253	Seriola_lalandi_dorsalis
ENSPTRG00000049288	-	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSPTRG00000049288	-	100	89.216	ENSSPUG00000014396	CPSF1	100	89.216	Sphenodon_punctatus
ENSPTRG00000049288	-	100	81.448	ENSSPAG00000005349	cpsf1	100	78.161	Stegastes_partitus
ENSPTRG00000049288	-	100	96.125	ENSSSCG00000005906	CPSF1	100	96.125	Sus_scrofa
ENSPTRG00000049288	-	100	78.281	ENSTRUG00000013134	cpsf1	99	77.832	Takifugu_rubripes
ENSPTRG00000049288	-	100	78.832	ENSTNIG00000014027	cpsf1	100	78.488	Tetraodon_nigroviridis
ENSPTRG00000049288	-	77	89.310	ENSTBEG00000001756	CPSF1	91	89.310	Tupaia_belangeri
ENSPTRG00000049288	-	100	89.593	ENSTTRG00000001937	CPSF1	90	96.718	Tursiops_truncatus
ENSPTRG00000049288	-	97	96.783	ENSUAMG00000006476	CPSF1	98	96.783	Ursus_americanus
ENSPTRG00000049288	-	69	57.516	ENSVPAG00000000157	-	50	94.949	Vicugna_pacos
ENSPTRG00000049288	-	100	94.118	ENSVVUG00000005940	-	100	94.118	Vulpes_vulpes
ENSPTRG00000049288	-	100	77.593	ENSXCOG00000003608	cpsf1	100	77.455	Xiphophorus_couchianus
ENSPTRG00000049288	-	100	77.828	ENSXMAG00000005798	cpsf1	100	77.072	Xiphophorus_maculatus