EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000049876 (Gene tree)
Gene ID: 100614878
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 81138 bases
Position: chrX:129165740-129246877
Accession: 100614878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000091660	ResIII	PF04851.15	9.4e-12	1	1
ENSPTRP00000069852	ResIII	PF04851.15	9.5e-12	1	1
ENSPTRP00000082274	ResIII	PF04851.15	1.1e-11	1	1
ENSPTRP00000069852	DEAD	PF00270.29	1.7e-06	1	1
ENSPTRP00000091660	DEAD	PF00270.29	1.8e-06	1	1
ENSPTRP00000082274	DEAD	PF00270.29	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000096183	SMARCA1-203	3213	XM_016943753	ENSPTRP00000091660	1070 (aa)	XP_016799242	K7DQN1
ENSPTRT00000090875	SMARCA1-201	4097	XM_016943755	ENSPTRP00000069852	1042 (aa)	XP_016799244	K7AK55
ENSPTRT00000089066	SMARCA1-202	3652	-	ENSPTRP00000082274	1111 (aa)	-	A0A2I3SZ39

Gene Model

Click here to download ENSPTRG00000049876's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000049876's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000049876	SMARCA1	91	86.392	ENSPTRG00000016472	SMARCA5	99	85.035
ENSPTRG00000049876	SMARCA1	50	47.410	ENSPTRG00000002778	HELLS	78	47.410
ENSPTRG00000049876	SMARCA1	54	43.761	ENSPTRG00000001220	CHD1L	61	43.761
ENSPTRG00000049876	SMARCA1	50	42.287	ENSPTRG00000013504	CHD6	75	40.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000049876	SMARCA1	100	100.000	ENSG00000102038	SMARCA1	100	100.000	Homo_sapiens
ENSPTRG00000049876	SMARCA1	90	84.952	ENSAPOG00000016035	smarca5	98	84.026	Acanthochromis_polyacanthus
ENSPTRG00000049876	SMARCA1	100	97.009	ENSAMEG00000015218	SMARCA1	100	97.009	Ailuropoda_melanoleuca
ENSPTRG00000049876	SMARCA1	83	85.532	ENSACIG00000016982	smarca5	99	84.152	Amphilophus_citrinellus
ENSPTRG00000049876	SMARCA1	90	84.952	ENSAOCG00000015578	smarca5	95	82.762	Amphiprion_ocellaris
ENSPTRG00000049876	SMARCA1	90	84.952	ENSAPEG00000011117	smarca5	99	84.080	Amphiprion_percula
ENSPTRG00000049876	SMARCA1	97	80.495	ENSATEG00000012894	smarca5	95	83.213	Anabas_testudineus
ENSPTRG00000049876	SMARCA1	93	92.153	ENSAPLG00000013149	SMARCA1	100	93.279	Anas_platyrhynchos
ENSPTRG00000049876	SMARCA1	97	90.060	ENSACAG00000011376	SMARCA1	95	91.491	Anolis_carolinensis
ENSPTRG00000049876	SMARCA1	100	94.766	ENSANAG00000023098	SMARCA1	100	94.802	Aotus_nancymaae
ENSPTRG00000049876	SMARCA1	94	82.245	ENSACLG00000025356	smarca5	95	83.165	Astatotilapia_calliptera
ENSPTRG00000049876	SMARCA1	98	79.828	ENSAMXG00000005709	smarca5	94	84.000	Astyanax_mexicanus
ENSPTRG00000049876	SMARCA1	88	88.889	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSPTRG00000049876	SMARCA1	99	97.495	ENSBTAG00000002292	SMARCA1	99	97.429	Bos_taurus
ENSPTRG00000049876	SMARCA1	92	64.536	WBGene00002169	isw-1	97	63.673	Caenorhabditis_elegans
ENSPTRG00000049876	SMARCA1	100	99.626	ENSCJAG00000002868	SMARCA1	100	99.716	Callithrix_jacchus
ENSPTRG00000049876	SMARCA1	100	88.941	ENSCAFG00000018673	SMARCA1	99	88.824	Canis_familiaris
ENSPTRG00000049876	SMARCA1	99	98.647	ENSCAFG00020001751	SMARCA1	100	98.677	Canis_lupus_dingo
ENSPTRG00000049876	SMARCA1	99	97.495	ENSCHIG00000009837	SMARCA1	100	97.549	Capra_hircus
ENSPTRG00000049876	SMARCA1	95	98.814	ENSTSYG00000004240	SMARCA1	99	98.281	Carlito_syrichta
ENSPTRG00000049876	SMARCA1	98	95.989	ENSCPOG00000013601	SMARCA1	99	95.989	Cavia_porcellus
ENSPTRG00000049876	SMARCA1	100	96.729	ENSCCAG00000030817	SMARCA1	100	96.786	Cebus_capucinus
ENSPTRG00000049876	SMARCA1	100	100.000	ENSCATG00000015921	SMARCA1	100	100.000	Cercocebus_atys
ENSPTRG00000049876	SMARCA1	99	97.005	ENSCLAG00000002171	SMARCA1	100	97.070	Chinchilla_lanigera
ENSPTRG00000049876	SMARCA1	99	99.903	ENSCSAG00000008460	SMARCA1	100	99.905	Chlorocebus_sabaeus
ENSPTRG00000049876	SMARCA1	94	92.835	ENSCPBG00000001146	SMARCA1	94	92.793	Chrysemys_picta_bellii
ENSPTRG00000049876	SMARCA1	92	73.104	ENSCING00000004110	swi/snf	97	73.797	Ciona_intestinalis
ENSPTRG00000049876	SMARCA1	91	74.086	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSPTRG00000049876	SMARCA1	100	99.907	ENSCANG00000007183	SMARCA1	100	99.907	Colobus_angolensis_palliatus
ENSPTRG00000049876	SMARCA1	100	94.865	ENSCGRG00001010776	Smarca1	98	96.343	Cricetulus_griseus_chok1gshd
ENSPTRG00000049876	SMARCA1	95	95.578	ENSCGRG00000015301	Smarca1	98	96.356	Cricetulus_griseus_crigri
ENSPTRG00000049876	SMARCA1	92	84.503	ENSCSEG00000000328	smarca5	95	83.114	Cynoglossus_semilaevis
ENSPTRG00000049876	SMARCA1	93	82.093	ENSCVAG00000008668	smarca5	99	83.628	Cyprinodon_variegatus
ENSPTRG00000049876	SMARCA1	91	84.017	ENSDARG00000052348	smarca5	95	82.727	Danio_rerio
ENSPTRG00000049876	SMARCA1	93	86.103	ENSDARG00000012776	smarca1	97	85.375	Danio_rerio
ENSPTRG00000049876	SMARCA1	99	96.139	ENSDNOG00000004315	SMARCA1	100	96.139	Dasypus_novemcinctus
ENSPTRG00000049876	SMARCA1	100	96.449	ENSDORG00000009270	Smarca1	100	96.449	Dipodomys_ordii
ENSPTRG00000049876	SMARCA1	93	73.081	FBgn0011604	Iswi	98	72.305	Drosophila_melanogaster
ENSPTRG00000049876	SMARCA1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSPTRG00000049876	SMARCA1	93	79.919	ENSEBUG00000001239	smarca5	96	80.899	Eptatretus_burgeri
ENSPTRG00000049876	SMARCA1	97	92.692	ENSEASG00005008218	SMARCA1	100	93.333	Equus_asinus_asinus
ENSPTRG00000049876	SMARCA1	99	97.977	ENSECAG00000012106	SMARCA1	100	98.021	Equus_caballus
ENSPTRG00000049876	SMARCA1	77	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSPTRG00000049876	SMARCA1	92	87.747	ENSELUG00000010515	smarca1	98	86.927	Esox_lucius
ENSPTRG00000049876	SMARCA1	100	98.598	ENSFCAG00000018496	SMARCA1	100	98.677	Felis_catus
ENSPTRG00000049876	SMARCA1	88	93.538	ENSFALG00000000209	SMARCA1	98	93.640	Ficedula_albicollis
ENSPTRG00000049876	SMARCA1	95	96.894	ENSFDAG00000009818	SMARCA1	97	97.982	Fukomys_damarensis
ENSPTRG00000049876	SMARCA1	99	78.208	ENSFHEG00000007687	smarca5	94	82.828	Fundulus_heteroclitus
ENSPTRG00000049876	SMARCA1	95	91.037	ENSGALG00000008431	SMARCA1	97	92.835	Gallus_gallus
ENSPTRG00000049876	SMARCA1	93	82.495	ENSGAFG00000017731	smarca5	95	82.828	Gambusia_affinis
ENSPTRG00000049876	SMARCA1	91	93.671	ENSGAGG00000023575	SMARCA1	100	93.519	Gopherus_agassizii
ENSPTRG00000049876	SMARCA1	76	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSPTRG00000049876	SMARCA1	99	97.101	ENSHGLG00000003080	SMARCA1	100	97.070	Heterocephalus_glaber_female
ENSPTRG00000049876	SMARCA1	93	96.830	ENSHGLG00100001102	SMARCA1	100	96.803	Heterocephalus_glaber_male
ENSPTRG00000049876	SMARCA1	90	84.771	ENSHCOG00000005458	smarca5	95	82.727	Hippocampus_comes
ENSPTRG00000049876	SMARCA1	95	86.061	ENSIPUG00000016905	Smarca1	99	86.925	Ictalurus_punctatus
ENSPTRG00000049876	SMARCA1	97	79.671	ENSIPUG00000005229	SMARCA5	97	82.657	Ictalurus_punctatus
ENSPTRG00000049876	SMARCA1	100	97.333	ENSSTOG00000014524	SMARCA1	100	98.299	Ictidomys_tridecemlineatus
ENSPTRG00000049876	SMARCA1	100	96.545	ENSJJAG00000002593	Smarca1	100	96.545	Jaculus_jaculus
ENSPTRG00000049876	SMARCA1	90	84.984	ENSKMAG00000003777	smarca5	95	82.929	Kryptolebias_marmoratus
ENSPTRG00000049876	SMARCA1	94	81.637	ENSLBEG00000018112	smarca5	95	82.626	Labrus_bergylta
ENSPTRG00000049876	SMARCA1	89	83.888	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSPTRG00000049876	SMARCA1	95	89.697	ENSLACG00000016697	SMARCA1	98	90.190	Latimeria_chalumnae
ENSPTRG00000049876	SMARCA1	92	90.167	ENSLOCG00000014591	smarca1	97	88.855	Lepisosteus_oculatus
ENSPTRG00000049876	SMARCA1	94	96.643	ENSLAFG00000000896	SMARCA1	100	96.720	Loxodonta_africana
ENSPTRG00000049876	SMARCA1	100	100.000	ENSMFAG00000002117	SMARCA1	100	100.000	Macaca_fascicularis
ENSPTRG00000049876	SMARCA1	100	100.000	ENSMMUG00000008818	SMARCA1	100	100.000	Macaca_mulatta
ENSPTRG00000049876	SMARCA1	100	100.000	ENSMNEG00000041768	SMARCA1	100	100.000	Macaca_nemestrina
ENSPTRG00000049876	SMARCA1	100	99.907	ENSMLEG00000043198	SMARCA1	100	99.907	Mandrillus_leucophaeus
ENSPTRG00000049876	SMARCA1	93	82.696	ENSMAMG00000014294	smarca5	96	82.583	Mastacembelus_armatus
ENSPTRG00000049876	SMARCA1	94	82.245	ENSMZEG00005009369	smarca5	95	83.165	Maylandia_zebra
ENSPTRG00000049876	SMARCA1	95	91.330	ENSMGAG00000007042	SMARCA1	99	91.494	Meleagris_gallopavo
ENSPTRG00000049876	SMARCA1	100	95.893	ENSMAUG00000008133	Smarca1	100	95.893	Mesocricetus_auratus
ENSPTRG00000049876	SMARCA1	100	98.224	ENSMICG00000015768	SMARCA1	100	98.299	Microcebus_murinus
ENSPTRG00000049876	SMARCA1	100	95.066	ENSMOCG00000009464	Smarca1	100	95.673	Microtus_ochrogaster
ENSPTRG00000049876	SMARCA1	91	82.353	ENSMMOG00000005547	smarca5	99	81.231	Mola_mola
ENSPTRG00000049876	SMARCA1	97	89.635	ENSMODG00000013187	-	99	89.545	Monodelphis_domestica
ENSPTRG00000049876	SMARCA1	92	83.420	ENSMALG00000002081	smarca5	97	82.922	Monopterus_albus
ENSPTRG00000049876	SMARCA1	100	95.893	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.893	Mus_caroli
ENSPTRG00000049876	SMARCA1	100	95.893	ENSMUSG00000031099	Smarca1	100	95.893	Mus_musculus
ENSPTRG00000049876	SMARCA1	100	95.989	MGP_PahariEiJ_G0031579	Smarca1	100	95.989	Mus_pahari
ENSPTRG00000049876	SMARCA1	100	95.989	MGP_SPRETEiJ_G0034192	Smarca1	100	95.989	Mus_spretus
ENSPTRG00000049876	SMARCA1	100	98.224	ENSMPUG00000017423	SMARCA1	98	96.589	Mustela_putorius_furo
ENSPTRG00000049876	SMARCA1	100	94.590	ENSMLUG00000029614	SMARCA1	100	94.030	Myotis_lucifugus
ENSPTRG00000049876	SMARCA1	100	96.657	ENSNGAG00000006492	Smarca1	100	96.657	Nannospalax_galili
ENSPTRG00000049876	SMARCA1	93	82.797	ENSNBRG00000004463	smarca5	99	83.131	Neolamprologus_brichardi
ENSPTRG00000049876	SMARCA1	100	99.159	ENSNLEG00000015179	SMARCA1	100	99.159	Nomascus_leucogenys
ENSPTRG00000049876	SMARCA1	90	82.038	ENSMEUG00000008819	SMARCA1	99	82.019	Notamacropus_eugenii
ENSPTRG00000049876	SMARCA1	100	95.446	ENSODEG00000012163	SMARCA1	99	96.466	Octodon_degus
ENSPTRG00000049876	SMARCA1	94	82.347	ENSONIG00000009993	smarca5	95	83.266	Oreochromis_niloticus
ENSPTRG00000049876	SMARCA1	91	94.099	ENSOANG00000002862	SMARCA1	100	93.827	Ornithorhynchus_anatinus
ENSPTRG00000049876	SMARCA1	99	96.715	ENSOCUG00000001047	SMARCA1	100	96.692	Oryctolagus_cuniculus
ENSPTRG00000049876	SMARCA1	90	84.771	ENSORLG00000021998	smarca5	95	82.828	Oryzias_latipes
ENSPTRG00000049876	SMARCA1	90	84.878	ENSORLG00020017679	smarca5	95	82.929	Oryzias_latipes_hni
ENSPTRG00000049876	SMARCA1	90	84.771	ENSORLG00015017210	smarca5	95	82.727	Oryzias_latipes_hsok
ENSPTRG00000049876	SMARCA1	90	84.771	ENSOMEG00000000086	smarca5	95	82.727	Oryzias_melastigma
ENSPTRG00000049876	SMARCA1	100	97.343	ENSOGAG00000004399	SMARCA1	99	98.376	Otolemur_garnettii
ENSPTRG00000049876	SMARCA1	95	97.335	ENSOARG00000014638	SMARCA1	100	98.878	Ovis_aries
ENSPTRG00000049876	SMARCA1	100	100.000	ENSPPAG00000034647	SMARCA1	100	100.000	Pan_paniscus
ENSPTRG00000049876	SMARCA1	100	98.598	ENSPPRG00000008929	SMARCA1	100	98.677	Panthera_pardus
ENSPTRG00000049876	SMARCA1	95	97.151	ENSPTIG00000000915	SMARCA1	98	97.151	Panthera_tigris_altaica
ENSPTRG00000049876	SMARCA1	100	100.000	ENSPANG00000003871	SMARCA1	100	100.000	Papio_anubis
ENSPTRG00000049876	SMARCA1	93	86.880	ENSPKIG00000013411	smarca1	98	87.124	Paramormyrops_kingsleyae
ENSPTRG00000049876	SMARCA1	95	91.807	ENSPSIG00000010101	SMARCA1	100	93.210	Pelodiscus_sinensis
ENSPTRG00000049876	SMARCA1	100	96.562	ENSPEMG00000017503	Smarca1	100	96.562	Peromyscus_maniculatus_bairdii
ENSPTRG00000049876	SMARCA1	97	90.335	ENSPCIG00000015460	SMARCA1	98	92.192	Phascolarctos_cinereus
ENSPTRG00000049876	SMARCA1	90	84.984	ENSPFOG00000007649	smarca5	95	82.828	Poecilia_formosa
ENSPTRG00000049876	SMARCA1	90	84.984	ENSPLAG00000003363	smarca5	95	82.828	Poecilia_latipinna
ENSPTRG00000049876	SMARCA1	90	84.878	ENSPMEG00000019849	smarca5	95	82.727	Poecilia_mexicana
ENSPTRG00000049876	SMARCA1	90	84.878	ENSPREG00000023250	smarca5	95	82.727	Poecilia_reticulata
ENSPTRG00000049876	SMARCA1	99	97.198	ENSPPYG00000020703	SMARCA1	100	97.259	Pongo_abelii
ENSPTRG00000049876	SMARCA1	78	90.909	ENSPCOG00000020722	SMARCA1	94	93.539	Propithecus_coquereli
ENSPTRG00000049876	SMARCA1	94	95.791	ENSPVAG00000003805	SMARCA1	94	97.297	Pteropus_vampyrus
ENSPTRG00000049876	SMARCA1	56	84.384	ENSPNYG00000012299	smarca5	92	82.933	Pundamilia_nyererei
ENSPTRG00000049876	SMARCA1	99	96.329	ENSRNOG00000003762	Smarca1	100	96.408	Rattus_norvegicus
ENSPTRG00000049876	SMARCA1	100	99.907	ENSRROG00000034167	SMARCA1	100	99.907	Rhinopithecus_roxellana
ENSPTRG00000049876	SMARCA1	96	98.258	ENSSBOG00000020641	SMARCA1	100	99.796	Saimiri_boliviensis_boliviensis
ENSPTRG00000049876	SMARCA1	91	86.870	ENSSHAG00000013518	SMARCA1	99	86.742	Sarcophilus_harrisii
ENSPTRG00000049876	SMARCA1	98	84.336	ENSSFOG00015009043	smarca1	98	87.675	Scleropages_formosus
ENSPTRG00000049876	SMARCA1	93	83.420	ENSSFOG00015016794	smarca5	100	83.814	Scleropages_formosus
ENSPTRG00000049876	SMARCA1	91	83.544	ENSSMAG00000004801	smarca5	95	82.371	Scophthalmus_maximus
ENSPTRG00000049876	SMARCA1	93	82.193	ENSSDUG00000020690	smarca5	96	82.525	Seriola_dumerili
ENSPTRG00000049876	SMARCA1	93	82.193	ENSSLDG00000025190	smarca5	96	82.525	Seriola_lalandi_dorsalis
ENSPTRG00000049876	SMARCA1	87	88.406	ENSSARG00000000842	SMARCA1	92	90.275	Sorex_araneus
ENSPTRG00000049876	SMARCA1	95	91.675	ENSSPUG00000000590	SMARCA1	95	91.658	Sphenodon_punctatus
ENSPTRG00000049876	SMARCA1	93	82.294	ENSSPAG00000002894	smarca5	97	84.026	Stegastes_partitus
ENSPTRG00000049876	SMARCA1	99	97.690	ENSSSCG00000012649	SMARCA1	100	97.690	Sus_scrofa
ENSPTRG00000049876	SMARCA1	93	91.650	ENSTGUG00000003899	-	100	92.770	Taeniopygia_guttata
ENSPTRG00000049876	SMARCA1	93	82.394	ENSTRUG00000014094	smarca5	95	82.727	Takifugu_rubripes
ENSPTRG00000049876	SMARCA1	90	83.671	ENSTNIG00000017717	smarca5	94	81.616	Tetraodon_nigroviridis
ENSPTRG00000049876	SMARCA1	94	90.261	ENSTBEG00000014973	SMARCA1	99	91.304	Tupaia_belangeri
ENSPTRG00000049876	SMARCA1	94	94.242	ENSTTRG00000006168	SMARCA1	99	95.320	Tursiops_truncatus
ENSPTRG00000049876	SMARCA1	99	98.068	ENSUAMG00000020201	SMARCA1	100	98.110	Ursus_americanus
ENSPTRG00000049876	SMARCA1	95	94.071	ENSUMAG00000004073	SMARCA1	97	98.783	Ursus_maritimus
ENSPTRG00000049876	SMARCA1	77	99.675	ENSVPAG00000010492	-	85	99.675	Vicugna_pacos
ENSPTRG00000049876	SMARCA1	94	98.976	ENSVVUG00000008878	SMARCA1	100	98.956	Vulpes_vulpes
ENSPTRG00000049876	SMARCA1	92	90.387	ENSXETG00000001526	smarca1	99	89.347	Xenopus_tropicalis
ENSPTRG00000049876	SMARCA1	93	82.394	ENSXCOG00000011170	smarca5	98	82.727	Xiphophorus_couchianus
ENSPTRG00000049876	SMARCA1	93	82.394	ENSXMAG00000009678	smarca5	98	84.641	Xiphophorus_maculatus