EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPVAG00000000990 (Gene tree)
Gene ID: -
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 5181 bases
Position: chrGeneScaffold_6:578091-583271
Accession: 20471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000000937	LSM	PF01423.22	2.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000000990	LSM8-201	258	-	ENSPVAP00000000937	85 (aa)	-	UPI00018B487E

Gene Model

Click here to download ENSPVAG00000000990's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000000990's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPVAG00000000990	LSM8	88	36.000	ENSPVAG00000006016	LSM1	56	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000000990	LSM8	100	98.824	ENSG00000128534	LSM8	100	98.667	Homo_sapiens
ENSPVAG00000000990	LSM8	100	94.118	ENSAPOG00000008649	lsm8	89	94.118	Acanthochromis_polyacanthus
ENSPVAG00000000990	LSM8	100	98.824	ENSAMEG00000001162	LSM8	89	98.824	Ailuropoda_melanoleuca
ENSPVAG00000000990	LSM8	88	96.000	ENSACIG00000014694	lsm8	100	96.000	Amphilophus_citrinellus
ENSPVAG00000000990	LSM8	100	94.118	ENSAOCG00000013926	lsm8	89	94.118	Amphiprion_ocellaris
ENSPVAG00000000990	LSM8	100	94.118	ENSAPEG00000023502	lsm8	89	94.118	Amphiprion_percula
ENSPVAG00000000990	LSM8	88	96.000	ENSATEG00000023432	lsm8	100	96.000	Anabas_testudineus
ENSPVAG00000000990	LSM8	100	97.647	ENSAPLG00000005115	LSM8	86	97.647	Anas_platyrhynchos
ENSPVAG00000000990	LSM8	100	98.824	ENSANAG00000027771	LSM8	100	95.946	Aotus_nancymaae
ENSPVAG00000000990	LSM8	100	94.118	ENSACLG00000011253	lsm8	89	94.118	Astatotilapia_calliptera
ENSPVAG00000000990	LSM8	100	96.471	ENSAMXG00000042902	lsm8	89	96.471	Astyanax_mexicanus
ENSPVAG00000000990	LSM8	100	98.824	ENSBTAG00000012649	LSM8	89	98.824	Bos_taurus
ENSPVAG00000000990	LSM8	96	58.537	WBGene00003082	lsm-8	84	58.537	Caenorhabditis_elegans
ENSPVAG00000000990	LSM8	100	98.824	ENSCJAG00000046406	LSM8	100	95.946	Callithrix_jacchus
ENSPVAG00000000990	LSM8	99	98.810	ENSCAFG00000016459	LSM8	85	98.810	Canis_familiaris
ENSPVAG00000000990	LSM8	100	85.882	ENSCAFG00020012800	-	66	85.882	Canis_lupus_dingo
ENSPVAG00000000990	LSM8	100	98.824	ENSCAFG00020007643	-	89	98.824	Canis_lupus_dingo
ENSPVAG00000000990	LSM8	100	98.824	ENSCHIG00000014201	LSM8	90	98.824	Capra_hircus
ENSPVAG00000000990	LSM8	100	98.824	ENSTSYG00000032434	LSM8	89	98.824	Carlito_syrichta
ENSPVAG00000000990	LSM8	87	97.297	ENSCAPG00000008253	LSM8	100	97.297	Cavia_aperea
ENSPVAG00000000990	LSM8	100	98.824	ENSCPOG00000035673	LSM8	89	98.824	Cavia_porcellus
ENSPVAG00000000990	LSM8	100	98.824	ENSCCAG00000021329	LSM8	100	95.946	Cebus_capucinus
ENSPVAG00000000990	LSM8	100	98.824	ENSCATG00000045302	LSM8	100	95.946	Cercocebus_atys
ENSPVAG00000000990	LSM8	100	98.824	ENSCLAG00000003726	LSM8	89	98.824	Chinchilla_lanigera
ENSPVAG00000000990	LSM8	100	96.471	ENSCSAG00000019007	-	89	96.471	Chlorocebus_sabaeus
ENSPVAG00000000990	LSM8	100	98.824	ENSCSAG00000010802	-	89	98.824	Chlorocebus_sabaeus
ENSPVAG00000000990	LSM8	100	98.824	ENSCPBG00000008154	LSM8	87	98.824	Chrysemys_picta_bellii
ENSPVAG00000000990	LSM8	99	76.190	ENSCING00000024877	-	88	76.190	Ciona_intestinalis
ENSPVAG00000000990	LSM8	100	98.824	ENSCANG00000040728	LSM8	100	95.946	Colobus_angolensis_palliatus
ENSPVAG00000000990	LSM8	100	98.824	ENSCGRG00001000450	Lsm8	89	98.824	Cricetulus_griseus_chok1gshd
ENSPVAG00000000990	LSM8	100	98.824	ENSCGRG00000005587	Lsm8	100	98.824	Cricetulus_griseus_crigri
ENSPVAG00000000990	LSM8	85	94.444	ENSCSEG00000004164	lsm8	79	94.444	Cynoglossus_semilaevis
ENSPVAG00000000990	LSM8	100	92.941	ENSCVAG00000020547	lsm8	89	92.941	Cyprinodon_variegatus
ENSPVAG00000000990	LSM8	100	94.118	ENSDARG00000091656	lsm8	89	94.118	Danio_rerio
ENSPVAG00000000990	LSM8	100	98.824	ENSDNOG00000034613	LSM8	89	98.824	Dasypus_novemcinctus
ENSPVAG00000000990	LSM8	100	98.824	ENSDORG00000027868	Lsm8	89	98.824	Dipodomys_ordii
ENSPVAG00000000990	LSM8	100	68.235	FBgn0035271	CG2021	89	68.235	Drosophila_melanogaster
ENSPVAG00000000990	LSM8	100	97.647	ENSETEG00000011594	LSM8	89	97.647	Echinops_telfairi
ENSPVAG00000000990	LSM8	87	90.541	ENSEBUG00000012017	lsm8	100	90.541	Eptatretus_burgeri
ENSPVAG00000000990	LSM8	100	98.824	ENSEASG00005008932	LSM8	55	98.824	Equus_asinus_asinus
ENSPVAG00000000990	LSM8	100	98.824	ENSECAG00000024025	LSM8	77	98.824	Equus_caballus
ENSPVAG00000000990	LSM8	100	92.941	ENSELUG00000010138	lsm8	89	92.941	Esox_lucius
ENSPVAG00000000990	LSM8	91	72.727	ENSFCAG00000044794	-	78	72.727	Felis_catus
ENSPVAG00000000990	LSM8	100	98.824	ENSFCAG00000036620	-	89	98.824	Felis_catus
ENSPVAG00000000990	LSM8	100	97.647	ENSFALG00000010023	LSM8	89	97.647	Ficedula_albicollis
ENSPVAG00000000990	LSM8	100	98.824	ENSFDAG00000019530	LSM8	89	98.824	Fukomys_damarensis
ENSPVAG00000000990	LSM8	100	94.118	ENSFHEG00000013729	lsm8	89	94.118	Fundulus_heteroclitus
ENSPVAG00000000990	LSM8	100	97.647	ENSGALG00000009110	LSM8	89	97.647	Gallus_gallus
ENSPVAG00000000990	LSM8	100	92.941	ENSGAFG00000001135	lsm8	89	92.941	Gambusia_affinis
ENSPVAG00000000990	LSM8	100	98.824	ENSGAGG00000017366	LSM8	89	98.824	Gopherus_agassizii
ENSPVAG00000000990	LSM8	100	98.824	ENSGGOG00000041883	LSM8	89	98.824	Gorilla_gorilla
ENSPVAG00000000990	LSM8	100	94.118	ENSHBUG00000003646	lsm8	89	94.118	Haplochromis_burtoni
ENSPVAG00000000990	LSM8	100	92.941	ENSHGLG00000019782	-	89	92.941	Heterocephalus_glaber_female
ENSPVAG00000000990	LSM8	67	98.246	ENSHGLG00000001988	-	83	98.246	Heterocephalus_glaber_female
ENSPVAG00000000990	LSM8	100	94.118	ENSHGLG00100012166	-	88	94.118	Heterocephalus_glaber_male
ENSPVAG00000000990	LSM8	99	95.238	ENSHGLG00100003934	-	84	95.238	Heterocephalus_glaber_male
ENSPVAG00000000990	LSM8	100	92.941	ENSHCOG00000005037	lsm8	89	92.941	Hippocampus_comes
ENSPVAG00000000990	LSM8	100	96.471	ENSIPUG00000019811	NAA38	89	96.471	Ictalurus_punctatus
ENSPVAG00000000990	LSM8	100	87.059	ENSSTOG00000034801	-	79	87.059	Ictidomys_tridecemlineatus
ENSPVAG00000000990	LSM8	100	98.824	ENSSTOG00000009039	LSM8	89	98.824	Ictidomys_tridecemlineatus
ENSPVAG00000000990	LSM8	100	98.824	ENSJJAG00000009031	Lsm8	88	98.824	Jaculus_jaculus
ENSPVAG00000000990	LSM8	100	94.118	ENSKMAG00000018983	lsm8	89	94.118	Kryptolebias_marmoratus
ENSPVAG00000000990	LSM8	100	94.118	ENSLACG00000010231	LSM8	89	94.118	Latimeria_chalumnae
ENSPVAG00000000990	LSM8	100	95.294	ENSLOCG00000015580	lsm8	89	95.294	Lepisosteus_oculatus
ENSPVAG00000000990	LSM8	100	98.824	ENSLAFG00000011242	LSM8	88	98.824	Loxodonta_africana
ENSPVAG00000000990	LSM8	100	97.647	ENSMFAG00000013044	-	89	97.647	Macaca_fascicularis
ENSPVAG00000000990	LSM8	100	98.824	ENSMFAG00000035798	LSM8	100	95.946	Macaca_fascicularis
ENSPVAG00000000990	LSM8	100	98.824	ENSMMUG00000046401	LSM8	100	95.946	Macaca_mulatta
ENSPVAG00000000990	LSM8	100	98.824	ENSMNEG00000036764	-	100	95.946	Macaca_nemestrina
ENSPVAG00000000990	LSM8	88	97.333	ENSMNEG00000011141	-	100	97.333	Macaca_nemestrina
ENSPVAG00000000990	LSM8	100	98.824	ENSMLEG00000035828	-	100	95.946	Mandrillus_leucophaeus
ENSPVAG00000000990	LSM8	100	83.529	ENSMLEG00000039324	-	88	83.529	Mandrillus_leucophaeus
ENSPVAG00000000990	LSM8	88	96.000	ENSMAMG00000018839	lsm8	100	96.000	Mastacembelus_armatus
ENSPVAG00000000990	LSM8	100	94.118	ENSMZEG00005019138	lsm8	89	94.118	Maylandia_zebra
ENSPVAG00000000990	LSM8	100	97.647	ENSMGAG00000008808	LSM8	89	97.647	Meleagris_gallopavo
ENSPVAG00000000990	LSM8	100	90.588	ENSMAUG00000015721	-	88	90.588	Mesocricetus_auratus
ENSPVAG00000000990	LSM8	100	80.000	ENSMAUG00000015356	-	87	80.000	Mesocricetus_auratus
ENSPVAG00000000990	LSM8	85	91.667	ENSMAUG00000020287	-	100	89.189	Mesocricetus_auratus
ENSPVAG00000000990	LSM8	100	98.824	ENSMICG00000042730	LSM8	89	98.824	Microcebus_murinus
ENSPVAG00000000990	LSM8	100	98.824	ENSMOCG00000001688	Lsm8	89	98.824	Microtus_ochrogaster
ENSPVAG00000000990	LSM8	88	96.000	ENSMMOG00000006046	lsm8	100	96.000	Mola_mola
ENSPVAG00000000990	LSM8	86	85.333	ENSMODG00000015729	LSM8	96	85.333	Monodelphis_domestica
ENSPVAG00000000990	LSM8	100	95.294	ENSMALG00000000405	lsm8	89	95.294	Monopterus_albus
ENSPVAG00000000990	LSM8	100	98.824	MGP_CAROLIEiJ_G0028125	-	89	98.824	Mus_caroli
ENSPVAG00000000990	LSM8	100	98.824	ENSMUSG00000044155	Lsm8	89	98.824	Mus_musculus
ENSPVAG00000000990	LSM8	100	98.824	MGP_PahariEiJ_G0021881	Lsm8	100	98.667	Mus_pahari
ENSPVAG00000000990	LSM8	100	98.824	MGP_SPRETEiJ_G0029125	-	89	98.824	Mus_spretus
ENSPVAG00000000990	LSM8	100	97.647	ENSMLUG00000027762	-	89	97.647	Myotis_lucifugus
ENSPVAG00000000990	LSM8	100	98.824	ENSMLUG00000006837	-	89	98.824	Myotis_lucifugus
ENSPVAG00000000990	LSM8	100	98.824	ENSNGAG00000016554	Lsm8	89	98.824	Nannospalax_galili
ENSPVAG00000000990	LSM8	100	94.118	ENSNBRG00000014441	lsm8	89	94.118	Neolamprologus_brichardi
ENSPVAG00000000990	LSM8	100	98.824	ENSNLEG00000011768	LSM8	89	98.824	Nomascus_leucogenys
ENSPVAG00000000990	LSM8	100	85.882	ENSMEUG00000007801	LSM8	88	85.882	Notamacropus_eugenii
ENSPVAG00000000990	LSM8	100	98.824	ENSOPRG00000014809	LSM8	100	98.824	Ochotona_princeps
ENSPVAG00000000990	LSM8	100	98.824	ENSODEG00000000418	-	89	98.824	Octodon_degus
ENSPVAG00000000990	LSM8	88	82.667	ENSODEG00000020290	-	87	82.667	Octodon_degus
ENSPVAG00000000990	LSM8	100	98.824	ENSOANG00000014536	LSM8	89	98.824	Ornithorhynchus_anatinus
ENSPVAG00000000990	LSM8	100	98.824	ENSOCUG00000017359	LSM8	88	98.824	Oryctolagus_cuniculus
ENSPVAG00000000990	LSM8	85	95.833	ENSORLG00000017432	lsm8	77	95.833	Oryzias_latipes
ENSPVAG00000000990	LSM8	85	95.833	ENSORLG00020004376	lsm8	77	95.833	Oryzias_latipes_hni
ENSPVAG00000000990	LSM8	100	94.118	ENSORLG00015003757	lsm8	89	94.118	Oryzias_latipes_hsok
ENSPVAG00000000990	LSM8	81	95.652	ENSOMEG00000022509	lsm8	83	92.000	Oryzias_melastigma
ENSPVAG00000000990	LSM8	100	98.824	ENSOGAG00000013377	LSM8	89	98.824	Otolemur_garnettii
ENSPVAG00000000990	LSM8	100	98.824	ENSOARG00000017974	LSM8	89	98.824	Ovis_aries
ENSPVAG00000000990	LSM8	88	98.667	ENSPPAG00000043228	-	100	98.667	Pan_paniscus
ENSPVAG00000000990	LSM8	100	98.824	ENSPPRG00000006444	LSM8	89	98.824	Panthera_pardus
ENSPVAG00000000990	LSM8	100	98.824	ENSPTIG00000004722	LSM8	89	98.824	Panthera_tigris_altaica
ENSPVAG00000000990	LSM8	88	98.667	ENSPTRG00000046596	-	100	98.667	Pan_troglodytes
ENSPVAG00000000990	LSM8	100	96.471	ENSPANG00000019395	-	89	96.471	Papio_anubis
ENSPVAG00000000990	LSM8	100	98.824	ENSPANG00000035470	-	100	95.946	Papio_anubis
ENSPVAG00000000990	LSM8	100	96.471	ENSPKIG00000006092	lsm8	86	96.471	Paramormyrops_kingsleyae
ENSPVAG00000000990	LSM8	88	98.667	ENSPSIG00000017054	LSM8	100	98.667	Pelodiscus_sinensis
ENSPVAG00000000990	LSM8	88	96.000	ENSPMGG00000016442	lsm8	100	96.000	Periophthalmus_magnuspinnatus
ENSPVAG00000000990	LSM8	87	95.946	ENSPEMG00000009153	Lsm8	100	95.946	Peromyscus_maniculatus_bairdii
ENSPVAG00000000990	LSM8	96	98.780	ENSPCIG00000021467	LSM8	86	98.780	Phascolarctos_cinereus
ENSPVAG00000000990	LSM8	100	92.941	ENSPFOG00000012340	lsm8	89	92.941	Poecilia_formosa
ENSPVAG00000000990	LSM8	100	92.941	ENSPLAG00000000516	lsm8	89	92.941	Poecilia_latipinna
ENSPVAG00000000990	LSM8	100	92.941	ENSPMEG00000022567	lsm8	89	92.941	Poecilia_mexicana
ENSPVAG00000000990	LSM8	86	83.750	ENSPREG00000005527	lsm8	72	83.750	Poecilia_reticulata
ENSPVAG00000000990	LSM8	100	98.824	ENSPPYG00000017942	LSM8	89	98.824	Pongo_abelii
ENSPVAG00000000990	LSM8	99	76.190	ENSPCOG00000017982	-	86	76.190	Propithecus_coquereli
ENSPVAG00000000990	LSM8	100	98.824	ENSPCOG00000003309	-	89	98.824	Propithecus_coquereli
ENSPVAG00000000990	LSM8	100	94.118	ENSPNYG00000011448	lsm8	89	94.118	Pundamilia_nyererei
ENSPVAG00000000990	LSM8	100	96.471	ENSPNAG00000010252	lsm8	89	96.471	Pygocentrus_nattereri
ENSPVAG00000000990	LSM8	100	98.824	ENSRNOG00000058677	Lsm8	89	98.824	Rattus_norvegicus
ENSPVAG00000000990	LSM8	100	98.824	ENSRBIG00000032851	LSM8	100	95.946	Rhinopithecus_bieti
ENSPVAG00000000990	LSM8	100	98.824	ENSRROG00000039618	LSM8	100	95.946	Rhinopithecus_roxellana
ENSPVAG00000000990	LSM8	100	98.824	ENSSBOG00000023223	LSM8	100	95.946	Saimiri_boliviensis_boliviensis
ENSPVAG00000000990	LSM8	100	98.824	ENSSHAG00000018435	-	89	98.824	Sarcophilus_harrisii
ENSPVAG00000000990	LSM8	100	92.941	ENSSFOG00015004412	lsm8	89	92.941	Scleropages_formosus
ENSPVAG00000000990	LSM8	88	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSPVAG00000000990	LSM8	100	94.118	ENSSDUG00000014702	lsm8	89	94.118	Seriola_dumerili
ENSPVAG00000000990	LSM8	88	96.000	ENSSLDG00000016870	lsm8	100	96.000	Seriola_lalandi_dorsalis
ENSPVAG00000000990	LSM8	85	98.611	ENSSARG00000009628	-	100	98.611	Sorex_araneus
ENSPVAG00000000990	LSM8	100	98.824	ENSSPUG00000017419	LSM8	89	98.824	Sphenodon_punctatus
ENSPVAG00000000990	LSM8	100	94.118	ENSSPAG00000021422	lsm8	89	94.118	Stegastes_partitus
ENSPVAG00000000990	LSM8	100	98.824	ENSSSCG00000021652	LSM8	89	98.824	Sus_scrofa
ENSPVAG00000000990	LSM8	100	97.647	ENSTGUG00000004730	-	89	97.647	Taeniopygia_guttata
ENSPVAG00000000990	LSM8	100	96.471	ENSTGUG00000016823	-	89	96.471	Taeniopygia_guttata
ENSPVAG00000000990	LSM8	100	94.118	ENSTRUG00000025192	lsm8	89	94.118	Takifugu_rubripes
ENSPVAG00000000990	LSM8	100	94.118	ENSTNIG00000002864	lsm8	89	94.118	Tetraodon_nigroviridis
ENSPVAG00000000990	LSM8	100	98.824	ENSTTRG00000001023	LSM8	89	98.824	Tursiops_truncatus
ENSPVAG00000000990	LSM8	100	98.824	ENSUAMG00000006943	-	89	98.824	Ursus_americanus
ENSPVAG00000000990	LSM8	100	98.824	ENSUMAG00000003073	LSM8	90	98.824	Ursus_maritimus
ENSPVAG00000000990	LSM8	100	98.824	ENSVPAG00000001530	LSM8	89	98.824	Vicugna_pacos
ENSPVAG00000000990	LSM8	88	96.000	ENSVVUG00000013248	-	82	96.000	Vulpes_vulpes
ENSPVAG00000000990	LSM8	100	96.471	ENSXETG00000021829	lsm8	88	96.471	Xenopus_tropicalis
ENSPVAG00000000990	LSM8	100	91.765	ENSXCOG00000012938	lsm8	89	91.765	Xiphophorus_couchianus
ENSPVAG00000000990	LSM8	100	92.941	ENSXMAG00000025919	lsm8	89	92.941	Xiphophorus_maculatus