EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000002159 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 151731 bases
Position: chrGeneScaffold_2866:298745-450475
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000002040	EST1_DNA_bind	PF10373.9	3.2e-60	1	1
ENSPVAP00000002040	PIN_4	PF13638.6	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000002160	SMG6-201	4248	-	ENSPVAP00000002040	1415 (aa)	-	UPI00018B45A5

Gene Model

Click here to download ENSPVAG00000002159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000002159's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000002159	SMG6	86	100.000	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSPVAG00000002159	SMG6	72	55.393	ENSAPOG00000019448	smg6	70	63.077	Acanthochromis_polyacanthus
ENSPVAG00000002159	SMG6	86	96.552	ENSAMEG00000007632	SMG6	86	96.552	Ailuropoda_melanoleuca
ENSPVAG00000002159	SMG6	75	55.487	ENSACIG00000012997	smg6	74	63.958	Amphilophus_citrinellus
ENSPVAG00000002159	SMG6	72	55.179	ENSAOCG00000002630	smg6	70	62.692	Amphiprion_ocellaris
ENSPVAG00000002159	SMG6	72	55.270	ENSAPEG00000019101	smg6	70	62.692	Amphiprion_percula
ENSPVAG00000002159	SMG6	83	51.613	ENSATEG00000006483	smg6	73	51.006	Anabas_testudineus
ENSPVAG00000002159	SMG6	70	56.920	ENSACAG00000011783	SMG6	82	58.090	Anolis_carolinensis
ENSPVAG00000002159	SMG6	86	100.000	ENSANAG00000035760	SMG6	86	100.000	Aotus_nancymaae
ENSPVAG00000002159	SMG6	71	55.309	ENSACLG00000005288	smg6	76	62.968	Astatotilapia_calliptera
ENSPVAG00000002159	SMG6	68	59.536	ENSAMXG00000017326	smg6	81	53.978	Astyanax_mexicanus
ENSPVAG00000002159	SMG6	86	96.552	ENSBTAG00000000267	SMG6	86	96.552	Bos_taurus
ENSPVAG00000002159	SMG6	86	100.000	ENSCJAG00000001820	SMG6	86	100.000	Callithrix_jacchus
ENSPVAG00000002159	SMG6	86	96.552	ENSCAFG00000019260	SMG6	86	96.552	Canis_familiaris
ENSPVAG00000002159	SMG6	86	96.552	ENSCAFG00020009770	SMG6	86	96.552	Canis_lupus_dingo
ENSPVAG00000002159	SMG6	86	100.000	ENSCHIG00000021998	SMG6	86	100.000	Capra_hircus
ENSPVAG00000002159	SMG6	86	100.000	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSPVAG00000002159	SMG6	76	83.138	ENSCAPG00000016197	SMG6	76	91.787	Cavia_aperea
ENSPVAG00000002159	SMG6	86	100.000	ENSCPOG00000014878	SMG6	97	92.105	Cavia_porcellus
ENSPVAG00000002159	SMG6	86	100.000	ENSCCAG00000035801	SMG6	86	100.000	Cebus_capucinus
ENSPVAG00000002159	SMG6	86	100.000	ENSCATG00000031956	SMG6	86	100.000	Cercocebus_atys
ENSPVAG00000002159	SMG6	86	100.000	ENSCLAG00000006748	SMG6	94	94.643	Chinchilla_lanigera
ENSPVAG00000002159	SMG6	86	96.552	ENSCSAG00000013800	SMG6	86	96.552	Chlorocebus_sabaeus
ENSPVAG00000002159	SMG6	84	73.697	ENSCPBG00000020369	SMG6	83	74.286	Chrysemys_picta_bellii
ENSPVAG00000002159	SMG6	84	89.992	ENSCANG00000031764	SMG6	100	96.673	Colobus_angolensis_palliatus
ENSPVAG00000002159	SMG6	84	81.161	ENSCGRG00000007782	Smg6	85	81.329	Cricetulus_griseus_crigri
ENSPVAG00000002159	SMG6	83	51.846	ENSCSEG00000012757	smg6	78	50.703	Cynoglossus_semilaevis
ENSPVAG00000002159	SMG6	68	61.735	ENSCVAG00000012789	smg6	70	62.166	Cyprinodon_variegatus
ENSPVAG00000002159	SMG6	79	53.656	ENSDARG00000100481	smg6	76	53.269	Danio_rerio
ENSPVAG00000002159	SMG6	86	100.000	ENSDNOG00000048283	SMG6	86	100.000	Dasypus_novemcinctus
ENSPVAG00000002159	SMG6	86	100.000	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSPVAG00000002159	SMG6	79	100.000	ENSETEG00000016790	SMG6	79	100.000	Echinops_telfairi
ENSPVAG00000002159	SMG6	52	57.833	ENSEBUG00000005059	smg6	51	53.650	Eptatretus_burgeri
ENSPVAG00000002159	SMG6	86	100.000	ENSEASG00005009318	SMG6	85	100.000	Equus_asinus_asinus
ENSPVAG00000002159	SMG6	86	100.000	ENSECAG00000006519	SMG6	85	100.000	Equus_caballus
ENSPVAG00000002159	SMG6	84	79.023	ENSEEUG00000003493	SMG6	84	79.023	Erinaceus_europaeus
ENSPVAG00000002159	SMG6	72	56.481	ENSELUG00000005934	smg6	64	64.974	Esox_lucius
ENSPVAG00000002159	SMG6	86	96.552	ENSFCAG00000028817	SMG6	86	96.552	Felis_catus
ENSPVAG00000002159	SMG6	83	74.177	ENSFALG00000006538	SMG6	84	74.240	Ficedula_albicollis
ENSPVAG00000002159	SMG6	86	100.000	ENSFDAG00000015106	SMG6	95	92.478	Fukomys_damarensis
ENSPVAG00000002159	SMG6	76	60.870	ENSFHEG00000013282	smg6	71	61.175	Fundulus_heteroclitus
ENSPVAG00000002159	SMG6	53	54.479	ENSGMOG00000019077	smg6	58	54.479	Gadus_morhua
ENSPVAG00000002159	SMG6	84	74.286	ENSGALG00000003108	SMG6	81	74.202	Gallus_gallus
ENSPVAG00000002159	SMG6	79	51.535	ENSGAFG00000000379	smg6	70	61.529	Gambusia_affinis
ENSPVAG00000002159	SMG6	68	63.732	ENSGACG00000020521	smg6	87	63.469	Gasterosteus_aculeatus
ENSPVAG00000002159	SMG6	84	73.613	ENSGAGG00000025617	SMG6	85	74.202	Gopherus_agassizii
ENSPVAG00000002159	SMG6	86	100.000	ENSGGOG00000017156	SMG6	86	100.000	Gorilla_gorilla
ENSPVAG00000002159	SMG6	72	55.242	ENSHBUG00000021311	smg6	70	62.968	Haplochromis_burtoni
ENSPVAG00000002159	SMG6	86	100.000	ENSHGLG00000012882	SMG6	95	92.920	Heterocephalus_glaber_female
ENSPVAG00000002159	SMG6	86	100.000	ENSHGLG00100017815	SMG6	95	92.920	Heterocephalus_glaber_male
ENSPVAG00000002159	SMG6	67	61.660	ENSHCOG00000008761	smg6	91	61.974	Hippocampus_comes
ENSPVAG00000002159	SMG6	80	52.907	ENSIPUG00000012493	smg6	75	51.738	Ictalurus_punctatus
ENSPVAG00000002159	SMG6	86	100.000	ENSSTOG00000028127	SMG6	97	94.323	Ictidomys_tridecemlineatus
ENSPVAG00000002159	SMG6	65	100.000	ENSJJAG00000015367	Smg6	78	100.000	Jaculus_jaculus
ENSPVAG00000002159	SMG6	74	62.850	ENSKMAG00000000279	smg6	71	62.835	Kryptolebias_marmoratus
ENSPVAG00000002159	SMG6	68	61.125	ENSLBEG00000002184	smg6	70	61.480	Labrus_bergylta
ENSPVAG00000002159	SMG6	73	61.179	ENSLOCG00000006448	smg6	81	68.924	Lepisosteus_oculatus
ENSPVAG00000002159	SMG6	86	96.552	ENSLAFG00000001261	SMG6	86	96.552	Loxodonta_africana
ENSPVAG00000002159	SMG6	86	100.000	ENSMFAG00000003394	SMG6	86	100.000	Macaca_fascicularis
ENSPVAG00000002159	SMG6	86	100.000	ENSMMUG00000023161	SMG6	86	100.000	Macaca_mulatta
ENSPVAG00000002159	SMG6	86	100.000	ENSMNEG00000044592	SMG6	86	100.000	Macaca_nemestrina
ENSPVAG00000002159	SMG6	79	96.805	ENSMLEG00000029353	SMG6	85	96.805	Mandrillus_leucophaeus
ENSPVAG00000002159	SMG6	78	53.586	ENSMAMG00000020119	smg6	79	52.516	Mastacembelus_armatus
ENSPVAG00000002159	SMG6	71	55.331	ENSMZEG00005024736	smg6	70	62.968	Maylandia_zebra
ENSPVAG00000002159	SMG6	58	69.100	ENSMGAG00000005401	-	77	69.100	Meleagris_gallopavo
ENSPVAG00000002159	SMG6	86	100.000	ENSMICG00000012913	SMG6	86	100.000	Microcebus_murinus
ENSPVAG00000002159	SMG6	78	53.209	ENSMMOG00000010883	smg6	77	52.615	Mola_mola
ENSPVAG00000002159	SMG6	86	89.655	ENSMODG00000010622	SMG6	86	89.655	Monodelphis_domestica
ENSPVAG00000002159	SMG6	72	55.515	ENSMALG00000001106	smg6	70	62.500	Monopterus_albus
ENSPVAG00000002159	SMG6	86	100.000	MGP_CAROLIEiJ_G0016729	Smg6	95	93.363	Mus_caroli
ENSPVAG00000002159	SMG6	86	100.000	ENSMUSG00000038290	Smg6	95	93.805	Mus_musculus
ENSPVAG00000002159	SMG6	86	96.552	MGP_PahariEiJ_G0017866	Smg6	95	93.805	Mus_pahari
ENSPVAG00000002159	SMG6	86	100.000	MGP_SPRETEiJ_G0017572	Smg6	96	92.982	Mus_spretus
ENSPVAG00000002159	SMG6	86	96.552	ENSMPUG00000013046	SMG6	86	96.552	Mustela_putorius_furo
ENSPVAG00000002159	SMG6	86	91.323	ENSMLUG00000005739	SMG6	86	91.323	Myotis_lucifugus
ENSPVAG00000002159	SMG6	84	88.394	ENSNGAG00000007287	Smg6	99	89.316	Nannospalax_galili
ENSPVAG00000002159	SMG6	72	55.422	ENSNBRG00000009511	smg6	80	50.945	Neolamprologus_brichardi
ENSPVAG00000002159	SMG6	84	90.160	ENSNLEG00000017171	SMG6	100	97.065	Nomascus_leucogenys
ENSPVAG00000002159	SMG6	84	82.912	ENSMEUG00000015804	SMG6	86	82.912	Notamacropus_eugenii
ENSPVAG00000002159	SMG6	61	91.787	ENSOPRG00000000579	SMG6	83	97.368	Ochotona_princeps
ENSPVAG00000002159	SMG6	81	100.000	ENSODEG00000008038	SMG6	85	100.000	Octodon_degus
ENSPVAG00000002159	SMG6	72	56.554	ENSONIG00000005594	smg6	83	53.306	Oreochromis_niloticus
ENSPVAG00000002159	SMG6	86	100.000	ENSOCUG00000013018	SMG6	86	100.000	Oryctolagus_cuniculus
ENSPVAG00000002159	SMG6	69	60.997	ENSORLG00000003317	smg6	71	61.253	Oryzias_latipes
ENSPVAG00000002159	SMG6	69	61.104	ENSORLG00020015343	smg6	71	61.104	Oryzias_latipes_hni
ENSPVAG00000002159	SMG6	69	60.870	ENSORLG00015020454	smg6	71	61.125	Oryzias_latipes_hsok
ENSPVAG00000002159	SMG6	73	53.190	ENSOMEG00000010838	smg6	71	61.381	Oryzias_melastigma
ENSPVAG00000002159	SMG6	86	100.000	ENSOGAG00000004483	SMG6	86	100.000	Otolemur_garnettii
ENSPVAG00000002159	SMG6	84	90.564	ENSOARG00000015076	SMG6	86	90.564	Ovis_aries
ENSPVAG00000002159	SMG6	86	100.000	ENSPPAG00000043296	SMG6	86	100.000	Pan_paniscus
ENSPVAG00000002159	SMG6	86	96.552	ENSPPRG00000014581	SMG6	86	96.552	Panthera_pardus
ENSPVAG00000002159	SMG6	84	92.334	ENSPTIG00000008925	SMG6	100	98.630	Panthera_tigris_altaica
ENSPVAG00000002159	SMG6	86	100.000	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSPVAG00000002159	SMG6	86	100.000	ENSPANG00000024588	SMG6	86	100.000	Papio_anubis
ENSPVAG00000002159	SMG6	74	72.401	ENSPSIG00000006660	SMG6	80	72.495	Pelodiscus_sinensis
ENSPVAG00000002159	SMG6	83	51.592	ENSPMGG00000000844	smg6	75	62.853	Periophthalmus_magnuspinnatus
ENSPVAG00000002159	SMG6	86	100.000	ENSPEMG00000020707	Smg6	97	93.363	Peromyscus_maniculatus_bairdii
ENSPVAG00000002159	SMG6	73	62.324	ENSPFOG00000012035	smg6	83	51.981	Poecilia_formosa
ENSPVAG00000002159	SMG6	73	61.588	ENSPLAG00000017660	smg6	71	61.588	Poecilia_latipinna
ENSPVAG00000002159	SMG6	73	62.324	ENSPMEG00000000258	smg6	71	62.100	Poecilia_mexicana
ENSPVAG00000002159	SMG6	75	61.686	ENSPREG00000010066	smg6	71	61.588	Poecilia_reticulata
ENSPVAG00000002159	SMG6	86	100.000	ENSPPYG00000007790	SMG6	86	100.000	Pongo_abelii
ENSPVAG00000002159	SMG6	86	100.000	ENSPCAG00000000552	SMG6	86	100.000	Procavia_capensis
ENSPVAG00000002159	SMG6	86	100.000	ENSPCOG00000020925	SMG6	86	100.000	Propithecus_coquereli
ENSPVAG00000002159	SMG6	71	57.579	ENSPNYG00000024151	smg6	79	53.143	Pundamilia_nyererei
ENSPVAG00000002159	SMG6	83	49.287	ENSPNAG00000015480	smg6	73	63.016	Pygocentrus_nattereri
ENSPVAG00000002159	SMG6	86	100.000	ENSRNOG00000003041	Smg6	86	100.000	Rattus_norvegicus
ENSPVAG00000002159	SMG6	86	100.000	ENSRBIG00000024746	SMG6	86	100.000	Rhinopithecus_bieti
ENSPVAG00000002159	SMG6	86	100.000	ENSRROG00000030423	SMG6	100	96.282	Rhinopithecus_roxellana
ENSPVAG00000002159	SMG6	86	100.000	ENSSBOG00000022518	SMG6	86	100.000	Saimiri_boliviensis_boliviensis
ENSPVAG00000002159	SMG6	84	84.945	ENSSHAG00000010045	SMG6	84	84.945	Sarcophilus_harrisii
ENSPVAG00000002159	SMG6	72	58.279	ENSSFOG00015005436	smg6	70	53.797	Scleropages_formosus
ENSPVAG00000002159	SMG6	83	52.031	ENSSMAG00000019777	smg6	73	51.529	Scophthalmus_maximus
ENSPVAG00000002159	SMG6	78	53.222	ENSSDUG00000016412	smg6	70	62.675	Seriola_dumerili
ENSPVAG00000002159	SMG6	74	52.170	ENSSLDG00000020747	smg6	72	61.570	Seriola_lalandi_dorsalis
ENSPVAG00000002159	SMG6	84	71.464	ENSSPUG00000007152	SMG6	83	71.381	Sphenodon_punctatus
ENSPVAG00000002159	SMG6	67	62.131	ENSSPAG00000015633	smg6	70	62.388	Stegastes_partitus
ENSPVAG00000002159	SMG6	86	100.000	ENSSSCG00000017826	SMG6	86	100.000	Sus_scrofa
ENSPVAG00000002159	SMG6	83	73.502	ENSTGUG00000005836	SMG6	84	73.733	Taeniopygia_guttata
ENSPVAG00000002159	SMG6	83	51.288	ENSTRUG00000000358	smg6	81	51.613	Takifugu_rubripes
ENSPVAG00000002159	SMG6	72	55.842	ENSTNIG00000016164	smg6	83	52.150	Tetraodon_nigroviridis
ENSPVAG00000002159	SMG6	86	100.000	ENSTBEG00000011424	SMG6	86	100.000	Tupaia_belangeri
ENSPVAG00000002159	SMG6	76	100.000	ENSTTRG00000001175	SMG6	76	100.000	Tursiops_truncatus
ENSPVAG00000002159	SMG6	86	96.552	ENSUAMG00000025152	SMG6	86	96.552	Ursus_americanus
ENSPVAG00000002159	SMG6	84	91.912	ENSUMAG00000009306	SMG6	86	91.912	Ursus_maritimus
ENSPVAG00000002159	SMG6	66	100.000	ENSVPAG00000000225	SMG6	69	100.000	Vicugna_pacos
ENSPVAG00000002159	SMG6	86	96.552	ENSVVUG00000021727	SMG6	86	96.552	Vulpes_vulpes
ENSPVAG00000002159	SMG6	79	70.241	ENSXETG00000023799	SMG6	81	70.241	Xenopus_tropicalis
ENSPVAG00000002159	SMG6	79	52.578	ENSXCOG00000009867	smg6	74	50.799	Xiphophorus_couchianus
ENSPVAG00000002159	SMG6	79	51.950	ENSXMAG00000010321	smg6	70	61.686	Xiphophorus_maculatus