EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000004368 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 8060 bases
Position: chrGeneScaffold_1173:4629-12688
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000004135	SMN	PF06003.12	6.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000004368	SMNDC1-201	717	-	ENSPVAP00000004135	238 (aa)	-	UPI00018B16C0

Gene Model

Click here to download ENSPVAG00000004368's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000004368's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000004368	SMNDC1	100	76.471	ENSG00000119953	SMNDC1	100	76.471	Homo_sapiens
ENSPVAG00000004368	SMNDC1	100	61.088	ENSAPOG00000021772	smndc1	100	61.088	Acanthochromis_polyacanthus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSPVAG00000004368	SMNDC1	100	61.088	ENSACIG00000004819	smndc1	100	61.088	Amphilophus_citrinellus
ENSPVAG00000004368	SMNDC1	100	61.088	ENSAOCG00000017869	smndc1	100	61.088	Amphiprion_ocellaris
ENSPVAG00000004368	SMNDC1	100	61.088	ENSAPEG00000007752	smndc1	100	61.088	Amphiprion_percula
ENSPVAG00000004368	SMNDC1	100	60.504	ENSATEG00000006830	smndc1	100	60.504	Anabas_testudineus
ENSPVAG00000004368	SMNDC1	83	68.687	ENSAPLG00000004322	SMNDC1	100	68.687	Anas_platyrhynchos
ENSPVAG00000004368	SMNDC1	100	73.109	ENSACAG00000005983	SMNDC1	100	73.109	Anolis_carolinensis
ENSPVAG00000004368	SMNDC1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSPVAG00000004368	SMNDC1	100	60.084	ENSACLG00000016360	smndc1	100	60.084	Astatotilapia_calliptera
ENSPVAG00000004368	SMNDC1	77	89.583	ENSAMXG00000020310	smndc1	77	89.583	Astyanax_mexicanus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSPVAG00000004368	SMNDC1	100	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSTSYG00000026454	SMNDC1	100	75.630	Carlito_syrichta
ENSPVAG00000004368	SMNDC1	100	61.667	ENSCAPG00000009132	SMNDC1	100	72.139	Cavia_aperea
ENSPVAG00000004368	SMNDC1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSPVAG00000004368	SMNDC1	81	69.948	ENSCHOG00000002936	SMNDC1	100	69.948	Choloepus_hoffmanni
ENSPVAG00000004368	SMNDC1	100	73.950	ENSCPBG00000012837	SMNDC1	100	73.950	Chrysemys_picta_bellii
ENSPVAG00000004368	SMNDC1	77	93.103	ENSCANG00000036994	-	85	93.103	Colobus_angolensis_palliatus
ENSPVAG00000004368	SMNDC1	76	94.792	ENSCANG00000034620	-	79	94.792	Colobus_angolensis_palliatus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSPVAG00000004368	SMNDC1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSPVAG00000004368	SMNDC1	77	89.583	ENSCSEG00000015621	smndc1	78	89.583	Cynoglossus_semilaevis
ENSPVAG00000004368	SMNDC1	100	60.924	ENSCVAG00000020432	smndc1	100	60.924	Cyprinodon_variegatus
ENSPVAG00000004368	SMNDC1	77	89.583	ENSDARG00000056235	smndc1	77	89.583	Danio_rerio
ENSPVAG00000004368	SMNDC1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSPVAG00000004368	SMNDC1	69	52.439	FBgn0039977	CG17454	76	56.098	Drosophila_melanogaster
ENSPVAG00000004368	SMNDC1	77	85.417	ENSEBUG00000010929	smndc1	76	85.417	Eptatretus_burgeri
ENSPVAG00000004368	SMNDC1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSPVAG00000004368	SMNDC1	83	96.970	ENSEEUG00000013407	-	100	96.970	Erinaceus_europaeus
ENSPVAG00000004368	SMNDC1	100	61.345	ENSELUG00000000227	smndc1	78	87.500	Esox_lucius
ENSPVAG00000004368	SMNDC1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSPVAG00000004368	SMNDC1	100	73.109	ENSFALG00000002306	SMNDC1	100	73.109	Ficedula_albicollis
ENSPVAG00000004368	SMNDC1	100	76.891	ENSFDAG00000006468	SMNDC1	100	76.891	Fukomys_damarensis
ENSPVAG00000004368	SMNDC1	100	60.504	ENSFHEG00000020150	smndc1	100	60.504	Fundulus_heteroclitus
ENSPVAG00000004368	SMNDC1	77	87.500	ENSGMOG00000016585	smndc1	78	87.500	Gadus_morhua
ENSPVAG00000004368	SMNDC1	100	73.109	ENSGALG00000008561	SMNDC1	100	73.109	Gallus_gallus
ENSPVAG00000004368	SMNDC1	100	59.664	ENSGAFG00000011582	smndc1	100	59.664	Gambusia_affinis
ENSPVAG00000004368	SMNDC1	100	59.244	ENSGACG00000009468	smndc1	100	59.244	Gasterosteus_aculeatus
ENSPVAG00000004368	SMNDC1	100	73.950	ENSGAGG00000024547	SMNDC1	100	73.950	Gopherus_agassizii
ENSPVAG00000004368	SMNDC1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSPVAG00000004368	SMNDC1	100	60.084	ENSHBUG00000017596	smndc1	100	60.084	Haplochromis_burtoni
ENSPVAG00000004368	SMNDC1	73	87.209	ENSHGLG00000001157	-	80	90.909	Heterocephalus_glaber_female
ENSPVAG00000004368	SMNDC1	100	76.891	ENSHGLG00000013390	-	100	76.891	Heterocephalus_glaber_female
ENSPVAG00000004368	SMNDC1	100	76.891	ENSHGLG00100004814	-	100	76.891	Heterocephalus_glaber_male
ENSPVAG00000004368	SMNDC1	73	87.209	ENSHGLG00100004278	-	74	90.909	Heterocephalus_glaber_male
ENSPVAG00000004368	SMNDC1	100	60.669	ENSHCOG00000000783	smndc1	77	89.583	Hippocampus_comes
ENSPVAG00000004368	SMNDC1	100	61.345	ENSIPUG00000004217	smndc1	100	61.345	Ictalurus_punctatus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSSTOG00000006088	SMNDC1	100	75.630	Ictidomys_tridecemlineatus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSPVAG00000004368	SMNDC1	100	59.244	ENSKMAG00000020134	smndc1	100	59.244	Kryptolebias_marmoratus
ENSPVAG00000004368	SMNDC1	100	57.143	ENSLBEG00000004598	smndc1	100	57.143	Labrus_bergylta
ENSPVAG00000004368	SMNDC1	100	67.227	ENSLACG00000007784	SMNDC1	100	67.227	Latimeria_chalumnae
ENSPVAG00000004368	SMNDC1	100	65.126	ENSLOCG00000012355	smndc1	100	65.126	Lepisosteus_oculatus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSPVAG00000004368	SMNDC1	100	51.681	ENSMFAG00000038381	-	76	94.792	Macaca_fascicularis
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSPVAG00000004368	SMNDC1	100	51.681	ENSMMUG00000045875	-	76	94.792	Macaca_mulatta
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSPVAG00000004368	SMNDC1	74	95.062	ENSMNEG00000033853	-	78	91.765	Macaca_nemestrina
ENSPVAG00000004368	SMNDC1	74	96.591	ENSMLEG00000040236	SMNDC1	76	96.591	Mandrillus_leucophaeus
ENSPVAG00000004368	SMNDC1	89	54.930	ENSMAMG00000018233	smndc1	87	54.930	Mastacembelus_armatus
ENSPVAG00000004368	SMNDC1	100	60.084	ENSMZEG00005027510	smndc1	100	60.084	Maylandia_zebra
ENSPVAG00000004368	SMNDC1	84	68.500	ENSMGAG00000010777	SMNDC1	84	68.500	Meleagris_gallopavo
ENSPVAG00000004368	SMNDC1	72	86.207	ENSMAUG00000005459	-	66	86.207	Mesocricetus_auratus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSPVAG00000004368	SMNDC1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSPVAG00000004368	SMNDC1	100	59.244	ENSMMOG00000008856	smndc1	100	59.244	Mola_mola
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSPVAG00000004368	SMNDC1	100	60.084	ENSMALG00000017598	smndc1	100	60.084	Monopterus_albus
ENSPVAG00000004368	SMNDC1	100	76.891	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.891	Mus_caroli
ENSPVAG00000004368	SMNDC1	100	76.471	ENSMUSG00000025024	Smndc1	100	76.471	Mus_musculus
ENSPVAG00000004368	SMNDC1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSPVAG00000004368	SMNDC1	100	76.471	MGP_SPRETEiJ_G0023993	Smndc1	100	76.471	Mus_spretus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSPVAG00000004368	SMNDC1	100	75.210	ENSMLUG00000016007	SMNDC1	100	75.210	Myotis_lucifugus
ENSPVAG00000004368	SMNDC1	100	75.210	ENSNGAG00000006833	Smndc1	100	75.210	Nannospalax_galili
ENSPVAG00000004368	SMNDC1	100	59.664	ENSNBRG00000017089	smndc1	100	59.664	Neolamprologus_brichardi
ENSPVAG00000004368	SMNDC1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSPVAG00000004368	SMNDC1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSPVAG00000004368	SMNDC1	75	73.494	ENSODEG00000007594	-	76	73.494	Octodon_degus
ENSPVAG00000004368	SMNDC1	100	59.664	ENSONIG00000000434	smndc1	100	59.664	Oreochromis_niloticus
ENSPVAG00000004368	SMNDC1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSPVAG00000004368	SMNDC1	77	82.759	ENSOCUG00000012274	-	76	82.759	Oryctolagus_cuniculus
ENSPVAG00000004368	SMNDC1	100	60.504	ENSORLG00000005934	smndc1	95	60.504	Oryzias_latipes
ENSPVAG00000004368	SMNDC1	100	60.504	ENSORLG00020008796	smndc1	95	60.504	Oryzias_latipes_hni
ENSPVAG00000004368	SMNDC1	100	60.504	ENSORLG00015013666	smndc1	100	60.504	Oryzias_latipes_hsok
ENSPVAG00000004368	SMNDC1	77	91.667	ENSOMEG00000007590	smndc1	77	91.667	Oryzias_melastigma
ENSPVAG00000004368	SMNDC1	100	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSPVAG00000004368	SMNDC1	100	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSPVAG00000004368	SMNDC1	77	97.701	ENSPANG00000031346	-	79	97.701	Papio_anubis
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSPVAG00000004368	SMNDC1	100	64.286	ENSPKIG00000017164	smndc1	77	91.667	Paramormyrops_kingsleyae
ENSPVAG00000004368	SMNDC1	100	74.370	ENSPSIG00000012257	SMNDC1	100	74.370	Pelodiscus_sinensis
ENSPVAG00000004368	SMNDC1	100	57.983	ENSPMGG00000015651	smndc1	77	86.458	Periophthalmus_magnuspinnatus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSPVAG00000004368	SMNDC1	77	79.167	ENSPMAG00000007705	smndc1	76	79.167	Petromyzon_marinus
ENSPVAG00000004368	SMNDC1	97	46.522	ENSPCIG00000009693	-	100	47.391	Phascolarctos_cinereus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSPVAG00000004368	SMNDC1	100	60.084	ENSPFOG00000017113	smndc1	100	60.084	Poecilia_formosa
ENSPVAG00000004368	SMNDC1	100	60.504	ENSPLAG00000010372	smndc1	100	60.504	Poecilia_latipinna
ENSPVAG00000004368	SMNDC1	100	60.504	ENSPMEG00000012288	smndc1	100	60.504	Poecilia_mexicana
ENSPVAG00000004368	SMNDC1	100	60.084	ENSPREG00000012279	smndc1	100	60.084	Poecilia_reticulata
ENSPVAG00000004368	SMNDC1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSPVAG00000004368	SMNDC1	81	69.948	ENSPCAG00000016183	SMNDC1	100	69.948	Procavia_capensis
ENSPVAG00000004368	SMNDC1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSPVAG00000004368	SMNDC1	92	52.889	ENSPNYG00000024093	smndc1	98	52.889	Pundamilia_nyererei
ENSPVAG00000004368	SMNDC1	100	60.924	ENSPNAG00000025285	smndc1	100	60.924	Pygocentrus_nattereri
ENSPVAG00000004368	SMNDC1	100	76.891	ENSRNOG00000014833	Smndc1	100	76.891	Rattus_norvegicus
ENSPVAG00000004368	SMNDC1	77	93.103	ENSRBIG00000032452	-	77	93.103	Rhinopithecus_bieti
ENSPVAG00000004368	SMNDC1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSPVAG00000004368	SMNDC1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSPVAG00000004368	SMNDC1	77	94.253	ENSRROG00000039125	-	77	94.253	Rhinopithecus_roxellana
ENSPVAG00000004368	SMNDC1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSPVAG00000004368	SMNDC1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSPVAG00000004368	SMNDC1	77	90.625	ENSSFOG00015008311	smndc1	77	90.625	Scleropages_formosus
ENSPVAG00000004368	SMNDC1	100	60.084	ENSSMAG00000020118	smndc1	100	60.084	Scophthalmus_maximus
ENSPVAG00000004368	SMNDC1	100	60.084	ENSSDUG00000015330	smndc1	100	60.084	Seriola_dumerili
ENSPVAG00000004368	SMNDC1	100	60.084	ENSSLDG00000017325	smndc1	100	60.084	Seriola_lalandi_dorsalis
ENSPVAG00000004368	SMNDC1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSPVAG00000004368	SMNDC1	100	73.109	ENSSPUG00000004574	SMNDC1	100	73.109	Sphenodon_punctatus
ENSPVAG00000004368	SMNDC1	100	61.088	ENSSPAG00000000338	smndc1	100	61.088	Stegastes_partitus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSPVAG00000004368	SMNDC1	100	73.109	ENSTGUG00000010599	SMNDC1	100	73.109	Taeniopygia_guttata
ENSPVAG00000004368	SMNDC1	100	58.824	ENSTRUG00000023281	smndc1	100	58.824	Takifugu_rubripes
ENSPVAG00000004368	SMNDC1	100	59.664	ENSTNIG00000013331	smndc1	100	59.664	Tetraodon_nigroviridis
ENSPVAG00000004368	SMNDC1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSPVAG00000004368	SMNDC1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSPVAG00000004368	SMNDC1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSPVAG00000004368	SMNDC1	83	70.707	ENSVPAG00000003402	SMNDC1	100	70.707	Vicugna_pacos
ENSPVAG00000004368	SMNDC1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSPVAG00000004368	SMNDC1	77	89.583	ENSXCOG00000009159	smndc1	78	89.583	Xiphophorus_couchianus
ENSPVAG00000004368	SMNDC1	100	59.664	ENSXMAG00000012755	smndc1	100	59.664	Xiphophorus_maculatus