EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000004613 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 11199 bases
Position: chrGeneScaffold_307:95679-106877
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000004365	HVSL	PF09749.9	1.5e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000004612	USB1-201	780	-	ENSPVAP00000004365	259 (aa)	-	UPI00018B3186

Gene Model

Click here to download ENSPVAG00000004613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000004613's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000004613	USB1	100	79.623	ENSG00000103005	USB1	100	83.178	Homo_sapiens
ENSPVAG00000004613	USB1	98	46.237	ENSAPOG00000011942	usb1	99	46.237	Acanthochromis_polyacanthus
ENSPVAG00000004613	USB1	100	81.041	ENSAMEG00000017205	USB1	100	81.784	Ailuropoda_melanoleuca
ENSPVAG00000004613	USB1	88	51.754	ENSACIG00000012234	usb1	99	47.619	Amphilophus_citrinellus
ENSPVAG00000004613	USB1	86	52.232	ENSAOCG00000014831	usb1	99	47.331	Amphiprion_ocellaris
ENSPVAG00000004613	USB1	86	52.679	ENSAPEG00000000296	usb1	99	47.687	Amphiprion_percula
ENSPVAG00000004613	USB1	95	49.798	ENSATEG00000009348	usb1	99	47.500	Anabas_testudineus
ENSPVAG00000004613	USB1	86	67.401	ENSAPLG00000002756	USB1	100	67.257	Anas_platyrhynchos
ENSPVAG00000004613	USB1	86	61.504	ENSACAG00000015481	USB1	99	61.504	Anolis_carolinensis
ENSPVAG00000004613	USB1	100	80.377	ENSANAG00000035640	USB1	100	80.377	Aotus_nancymaae
ENSPVAG00000004613	USB1	92	50.420	ENSACLG00000020586	usb1	99	47.143	Astatotilapia_calliptera
ENSPVAG00000004613	USB1	89	50.644	ENSAMXG00000040146	usb1	77	50.644	Astyanax_mexicanus
ENSPVAG00000004613	USB1	100	84.528	ENSBTAG00000015758	USB1	100	84.528	Bos_taurus
ENSPVAG00000004613	USB1	100	81.509	ENSCJAG00000011733	USB1	100	81.509	Callithrix_jacchus
ENSPVAG00000004613	USB1	99	79.779	ENSCAFG00000008556	USB1	73	80.515	Canis_familiaris
ENSPVAG00000004613	USB1	99	80.000	ENSCAFG00020009263	USB1	99	80.000	Canis_lupus_dingo
ENSPVAG00000004613	USB1	100	82.264	ENSCHIG00000024290	USB1	100	82.264	Capra_hircus
ENSPVAG00000004613	USB1	100	83.396	ENSTSYG00000006997	USB1	100	83.396	Carlito_syrichta
ENSPVAG00000004613	USB1	87	68.584	ENSCAPG00000009057	USB1	97	68.584	Cavia_aperea
ENSPVAG00000004613	USB1	100	79.104	ENSCPOG00000014325	USB1	100	79.104	Cavia_porcellus
ENSPVAG00000004613	USB1	100	81.132	ENSCCAG00000022132	USB1	100	81.132	Cebus_capucinus
ENSPVAG00000004613	USB1	100	81.509	ENSCATG00000032174	USB1	100	81.509	Cercocebus_atys
ENSPVAG00000004613	USB1	68	86.364	ENSCLAG00000007363	USB1	100	86.364	Chinchilla_lanigera
ENSPVAG00000004613	USB1	100	81.887	ENSCSAG00000004783	USB1	100	81.887	Chlorocebus_sabaeus
ENSPVAG00000004613	USB1	92	63.223	ENSCPBG00000026943	USB1	100	60.573	Chrysemys_picta_bellii
ENSPVAG00000004613	USB1	100	80.755	ENSCANG00000037135	USB1	100	80.755	Colobus_angolensis_palliatus
ENSPVAG00000004613	USB1	100	79.478	ENSCGRG00001011243	USB1	100	79.478	Cricetulus_griseus_chok1gshd
ENSPVAG00000004613	USB1	100	79.478	ENSCGRG00000013252	USB1	100	79.478	Cricetulus_griseus_crigri
ENSPVAG00000004613	USB1	99	48.249	ENSCSEG00000013881	usb1	92	48.249	Cynoglossus_semilaevis
ENSPVAG00000004613	USB1	86	48.261	ENSCVAG00000009252	usb1	97	49.561	Cyprinodon_variegatus
ENSPVAG00000004613	USB1	92	46.444	ENSDARG00000003841	usb1	99	43.682	Danio_rerio
ENSPVAG00000004613	USB1	100	78.868	ENSDORG00000001888	Usb1	100	78.868	Dipodomys_ordii
ENSPVAG00000004613	USB1	87	36.957	FBgn0037713	CG16790	97	37.308	Drosophila_melanogaster
ENSPVAG00000004613	USB1	100	70.037	ENSETEG00000019682	USB1	100	70.037	Echinops_telfairi
ENSPVAG00000004613	USB1	86	50.450	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSPVAG00000004613	USB1	100	84.151	ENSEASG00005005484	USB1	100	84.151	Equus_asinus_asinus
ENSPVAG00000004613	USB1	100	83.774	ENSECAG00000019493	USB1	91	83.774	Equus_caballus
ENSPVAG00000004613	USB1	68	75.000	ENSEEUG00000000154	USB1	79	75.000	Erinaceus_europaeus
ENSPVAG00000004613	USB1	94	43.852	ENSELUG00000010974	usb1	99	41.912	Esox_lucius
ENSPVAG00000004613	USB1	100	83.146	ENSFCAG00000002693	USB1	100	83.146	Felis_catus
ENSPVAG00000004613	USB1	100	58.889	ENSFALG00000006876	USB1	99	60.370	Ficedula_albicollis
ENSPVAG00000004613	USB1	100	82.772	ENSFDAG00000010052	USB1	100	82.772	Fukomys_damarensis
ENSPVAG00000004613	USB1	92	45.977	ENSFHEG00000012334	usb1	99	46.360	Fundulus_heteroclitus
ENSPVAG00000004613	USB1	86	49.327	ENSGMOG00000004228	usb1	99	49.327	Gadus_morhua
ENSPVAG00000004613	USB1	86	65.179	ENSGALG00000035604	USB1	100	62.692	Gallus_gallus
ENSPVAG00000004613	USB1	98	46.909	ENSGAFG00000021890	usb1	99	46.909	Gambusia_affinis
ENSPVAG00000004613	USB1	86	51.339	ENSGACG00000003257	usb1	99	46.739	Gasterosteus_aculeatus
ENSPVAG00000004613	USB1	100	60.584	ENSGAGG00000022572	USB1	100	60.584	Gopherus_agassizii
ENSPVAG00000004613	USB1	100	80.377	ENSGGOG00000017147	USB1	100	80.377	Gorilla_gorilla
ENSPVAG00000004613	USB1	92	50.420	ENSHBUG00000009823	usb1	99	47.312	Haplochromis_burtoni
ENSPVAG00000004613	USB1	100	82.022	ENSHGLG00000016078	USB1	98	82.022	Heterocephalus_glaber_female
ENSPVAG00000004613	USB1	100	82.022	ENSHGLG00100005562	USB1	98	82.022	Heterocephalus_glaber_male
ENSPVAG00000004613	USB1	98	50.000	ENSHCOG00000015633	usb1	99	50.000	Hippocampus_comes
ENSPVAG00000004613	USB1	86	53.571	ENSIPUG00000008601	usb1	78	53.571	Ictalurus_punctatus
ENSPVAG00000004613	USB1	100	81.685	ENSSTOG00000007548	USB1	100	81.685	Ictidomys_tridecemlineatus
ENSPVAG00000004613	USB1	100	82.022	ENSJJAG00000021859	Usb1	100	82.022	Jaculus_jaculus
ENSPVAG00000004613	USB1	86	50.446	ENSKMAG00000007200	usb1	99	46.071	Kryptolebias_marmoratus
ENSPVAG00000004613	USB1	79	49.756	ENSLBEG00000008452	usb1	65	49.756	Labrus_bergylta
ENSPVAG00000004613	USB1	85	57.207	ENSLACG00000000105	USB1	92	51.698	Latimeria_chalumnae
ENSPVAG00000004613	USB1	95	51.383	ENSLOCG00000000465	usb1	99	49.110	Lepisosteus_oculatus
ENSPVAG00000004613	USB1	100	62.222	ENSLAFG00000002267	USB1	100	62.222	Loxodonta_africana
ENSPVAG00000004613	USB1	100	81.509	ENSMFAG00000003926	USB1	100	81.509	Macaca_fascicularis
ENSPVAG00000004613	USB1	100	81.509	ENSMMUG00000022669	USB1	100	81.509	Macaca_mulatta
ENSPVAG00000004613	USB1	100	81.132	ENSMNEG00000042487	USB1	100	81.132	Macaca_nemestrina
ENSPVAG00000004613	USB1	100	81.509	ENSMLEG00000028756	USB1	100	81.509	Mandrillus_leucophaeus
ENSPVAG00000004613	USB1	98	48.746	ENSMAMG00000015092	usb1	99	48.746	Mastacembelus_armatus
ENSPVAG00000004613	USB1	92	50.420	ENSMZEG00005010008	usb1	99	47.312	Maylandia_zebra
ENSPVAG00000004613	USB1	100	78.277	ENSMAUG00000007832	Usb1	100	78.277	Mesocricetus_auratus
ENSPVAG00000004613	USB1	100	83.019	ENSMICG00000004900	USB1	100	83.396	Microcebus_murinus
ENSPVAG00000004613	USB1	100	76.404	ENSMOCG00000022647	Usb1	100	76.404	Microtus_ochrogaster
ENSPVAG00000004613	USB1	98	49.805	ENSMMOG00000000490	usb1	99	49.805	Mola_mola
ENSPVAG00000004613	USB1	100	64.925	ENSMODG00000014067	USB1	100	64.925	Monodelphis_domestica
ENSPVAG00000004613	USB1	95	50.607	ENSMALG00000005930	usb1	99	48.754	Monopterus_albus
ENSPVAG00000004613	USB1	100	78.652	MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	Mus_caroli
ENSPVAG00000004613	USB1	100	78.652	ENSMUSG00000031792	Usb1	100	83.186	Mus_musculus
ENSPVAG00000004613	USB1	100	78.277	MGP_PahariEiJ_G0023019	Usb1	100	82.906	Mus_pahari
ENSPVAG00000004613	USB1	100	77.903	MGP_SPRETEiJ_G0032540	Usb1	100	77.903	Mus_spretus
ENSPVAG00000004613	USB1	100	80.669	ENSMPUG00000004684	USB1	96	80.669	Mustela_putorius_furo
ENSPVAG00000004613	USB1	87	87.611	ENSMLUG00000007400	USB1	98	87.611	Myotis_lucifugus
ENSPVAG00000004613	USB1	100	81.041	ENSNGAG00000009703	Usb1	100	81.413	Nannospalax_galili
ENSPVAG00000004613	USB1	87	47.556	ENSNBRG00000008747	usb1	99	50.935	Neolamprologus_brichardi
ENSPVAG00000004613	USB1	94	80.400	ENSNLEG00000003340	USB1	100	80.400	Nomascus_leucogenys
ENSPVAG00000004613	USB1	55	58.824	ENSMEUG00000003328	-	100	60.784	Notamacropus_eugenii
ENSPVAG00000004613	USB1	62	88.235	ENSOPRG00000011803	USB1	69	88.235	Ochotona_princeps
ENSPVAG00000004613	USB1	100	77.528	ENSODEG00000016214	USB1	100	77.528	Octodon_degus
ENSPVAG00000004613	USB1	98	47.312	ENSONIG00000011063	usb1	99	47.312	Oreochromis_niloticus
ENSPVAG00000004613	USB1	86	69.333	ENSOANG00000012118	USB1	94	69.333	Ornithorhynchus_anatinus
ENSPVAG00000004613	USB1	86	49.107	ENSORLG00000012479	usb1	99	45.756	Oryzias_latipes
ENSPVAG00000004613	USB1	86	49.107	ENSORLG00020018671	usb1	99	45.926	Oryzias_latipes_hni
ENSPVAG00000004613	USB1	86	49.107	ENSORLG00015009679	usb1	99	45.185	Oryzias_latipes_hsok
ENSPVAG00000004613	USB1	86	50.000	ENSOMEG00000012930	usb1	99	46.545	Oryzias_melastigma
ENSPVAG00000004613	USB1	100	76.981	ENSOGAG00000003273	USB1	100	76.981	Otolemur_garnettii
ENSPVAG00000004613	USB1	95	81.028	ENSOARG00000001107	USB1	97	81.028	Ovis_aries
ENSPVAG00000004613	USB1	100	80.000	ENSPPAG00000042137	USB1	100	80.000	Pan_paniscus
ENSPVAG00000004613	USB1	100	83.146	ENSPPRG00000024797	USB1	100	83.146	Panthera_pardus
ENSPVAG00000004613	USB1	100	83.521	ENSPTIG00000007506	USB1	100	83.521	Panthera_tigris_altaica
ENSPVAG00000004613	USB1	100	73.962	ENSPTRG00000008172	USB1	100	84.112	Pan_troglodytes
ENSPVAG00000004613	USB1	100	81.509	ENSPANG00000025138	USB1	100	81.509	Papio_anubis
ENSPVAG00000004613	USB1	96	50.000	ENSPKIG00000015109	usb1	84	50.000	Paramormyrops_kingsleyae
ENSPVAG00000004613	USB1	86	48.945	ENSPSIG00000004305	USB1	100	48.945	Pelodiscus_sinensis
ENSPVAG00000004613	USB1	86	50.673	ENSPMGG00000017725	usb1	98	47.710	Periophthalmus_magnuspinnatus
ENSPVAG00000004613	USB1	100	77.941	ENSPEMG00000016183	Usb1	100	78.755	Peromyscus_maniculatus_bairdii
ENSPVAG00000004613	USB1	88	52.814	ENSPMAG00000000462	usb1	97	52.814	Petromyzon_marinus
ENSPVAG00000004613	USB1	98	46.931	ENSPFOG00000011130	usb1	99	46.931	Poecilia_formosa
ENSPVAG00000004613	USB1	98	46.931	ENSPLAG00000009820	usb1	99	46.931	Poecilia_latipinna
ENSPVAG00000004613	USB1	98	46.931	ENSPMEG00000006402	usb1	99	46.931	Poecilia_mexicana
ENSPVAG00000004613	USB1	88	46.800	ENSPREG00000001047	usb1	98	47.600	Poecilia_reticulata
ENSPVAG00000004613	USB1	95	76.984	ENSPPYG00000007401	USB1	100	76.984	Pongo_abelii
ENSPVAG00000004613	USB1	100	83.019	ENSPCOG00000022612	USB1	100	83.019	Propithecus_coquereli
ENSPVAG00000004613	USB1	92	50.420	ENSPNYG00000022262	usb1	99	47.312	Pundamilia_nyererei
ENSPVAG00000004613	USB1	86	50.000	ENSPNAG00000011736	usb1	76	50.000	Pygocentrus_nattereri
ENSPVAG00000004613	USB1	100	78.277	ENSRNOG00000013216	Usb1	100	78.277	Rattus_norvegicus
ENSPVAG00000004613	USB1	100	75.472	ENSRBIG00000044466	USB1	100	85.514	Rhinopithecus_bieti
ENSPVAG00000004613	USB1	100	81.509	ENSRROG00000029211	USB1	100	81.509	Rhinopithecus_roxellana
ENSPVAG00000004613	USB1	100	81.887	ENSSBOG00000029362	USB1	100	81.887	Saimiri_boliviensis_boliviensis
ENSPVAG00000004613	USB1	85	70.776	ENSSHAG00000006993	USB1	100	66.798	Sarcophilus_harrisii
ENSPVAG00000004613	USB1	85	56.164	ENSSFOG00015023663	usb1	69	56.164	Scleropages_formosus
ENSPVAG00000004613	USB1	98	48.188	ENSSMAG00000015834	usb1	99	46.939	Scophthalmus_maximus
ENSPVAG00000004613	USB1	86	53.571	ENSSDUG00000002949	usb1	99	48.529	Seriola_dumerili
ENSPVAG00000004613	USB1	95	49.796	ENSSLDG00000014174	usb1	99	47.670	Seriola_lalandi_dorsalis
ENSPVAG00000004613	USB1	83	64.019	ENSSPUG00000006741	USB1	100	64.019	Sphenodon_punctatus
ENSPVAG00000004613	USB1	86	51.339	ENSSPAG00000007484	usb1	99	46.290	Stegastes_partitus
ENSPVAG00000004613	USB1	100	83.271	ENSSSCG00000002807	USB1	100	83.271	Sus_scrofa
ENSPVAG00000004613	USB1	82	65.566	ENSTGUG00000004792	USB1	99	61.776	Taeniopygia_guttata
ENSPVAG00000004613	USB1	98	46.642	ENSTRUG00000021069	usb1	99	46.642	Takifugu_rubripes
ENSPVAG00000004613	USB1	98	48.077	ENSTNIG00000000626	usb1	98	48.077	Tetraodon_nigroviridis
ENSPVAG00000004613	USB1	88	59.649	ENSTBEG00000001507	USB1	98	59.649	Tupaia_belangeri
ENSPVAG00000004613	USB1	59	87.500	ENSTTRG00000008429	-	58	87.500	Tursiops_truncatus
ENSPVAG00000004613	USB1	100	79.926	ENSUAMG00000016823	USB1	100	81.041	Ursus_americanus
ENSPVAG00000004613	USB1	83	83.178	ENSUMAG00000021369	USB1	100	83.178	Ursus_maritimus
ENSPVAG00000004613	USB1	76	61.765	ENSVPAG00000009834	-	100	61.765	Vicugna_pacos
ENSPVAG00000004613	USB1	99	80.597	ENSVVUG00000023700	USB1	90	83.333	Vulpes_vulpes
ENSPVAG00000004613	USB1	98	51.373	ENSXETG00000013795	usb1	99	53.150	Xenopus_tropicalis
ENSPVAG00000004613	USB1	86	51.111	ENSXMAG00000024687	usb1	83	46.538	Xiphophorus_maculatus