EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPVAG00000005036 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 52971 bases
Position: chrGeneScaffold_3705:39291-92261
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000004765	RRM_1	PF00076.22	8.8e-33	1	2
ENSPVAP00000004765	RRM_1	PF00076.22	8.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000005037	PSPC1-201	1560	-	ENSPVAP00000004765	519 (aa)	-	UPI00018B2553

Gene Model

Click here to download ENSPVAG00000005036's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000005036's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPVAG00000005036	PSPC1	91	57.620	ENSPVAG00000001865	SFPQ	51	67.213
ENSPVAG00000005036	PSPC1	91	58.861	ENSPVAG00000016503	NONO	77	68.975

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000005036	PSPC1	100	94.455	ENSG00000121390	PSPC1	98	97.150	Homo_sapiens
ENSPVAG00000005036	PSPC1	92	68.347	ENSAPOG00000015946	pspc1	88	69.520	Acanthochromis_polyacanthus
ENSPVAG00000005036	PSPC1	100	95.202	ENSAMEG00000017420	PSPC1	100	95.010	Ailuropoda_melanoleuca
ENSPVAG00000005036	PSPC1	99	56.983	ENSACIG00000018695	pspc1	87	59.322	Amphilophus_citrinellus
ENSPVAG00000005036	PSPC1	92	67.068	ENSAOCG00000005279	pspc1	88	68.815	Amphiprion_ocellaris
ENSPVAG00000005036	PSPC1	92	68.098	ENSAPEG00000015927	pspc1	88	69.280	Amphiprion_percula
ENSPVAG00000005036	PSPC1	92	56.619	ENSATEG00000004878	pspc1	87	58.439	Anabas_testudineus
ENSPVAG00000005036	PSPC1	89	61.028	ENSAPLG00000003643	SFPQ	83	58.761	Anas_platyrhynchos
ENSPVAG00000005036	PSPC1	78	91.584	ENSAPLG00000006246	PSPC1	100	91.584	Anas_platyrhynchos
ENSPVAG00000005036	PSPC1	99	83.810	ENSACAG00000002093	PSPC1	88	90.578	Anolis_carolinensis
ENSPVAG00000005036	PSPC1	89	53.066	ENSACAG00000013307	-	67	55.460	Anolis_carolinensis
ENSPVAG00000005036	PSPC1	100	95.010	ENSANAG00000000059	PSPC1	100	94.626	Aotus_nancymaae
ENSPVAG00000005036	PSPC1	99	57.993	ENSACLG00000027220	pspc1	87	59.062	Astatotilapia_calliptera
ENSPVAG00000005036	PSPC1	99	63.904	ENSAMXG00000036881	pspc1	88	69.602	Astyanax_mexicanus
ENSPVAG00000005036	PSPC1	100	93.858	ENSBTAG00000003934	PSPC1	100	92.500	Bos_taurus
ENSPVAG00000005036	PSPC1	100	95.393	ENSCJAG00000004554	PSPC1	100	95.010	Callithrix_jacchus
ENSPVAG00000005036	PSPC1	100	95.010	ENSCAFG00020002009	PSPC1	98	97.656	Canis_lupus_dingo
ENSPVAG00000005036	PSPC1	100	93.858	ENSCHIG00000016708	PSPC1	100	92.500	Capra_hircus
ENSPVAG00000005036	PSPC1	77	89.055	ENSTSYG00000032882	PSPC1	93	82.898	Carlito_syrichta
ENSPVAG00000005036	PSPC1	100	94.434	ENSCPOG00000000395	PSPC1	98	97.917	Cavia_porcellus
ENSPVAG00000005036	PSPC1	100	95.010	ENSCCAG00000033498	PSPC1	100	94.626	Cebus_capucinus
ENSPVAG00000005036	PSPC1	100	93.117	ENSCATG00000036434	PSPC1	97	97.714	Cercocebus_atys
ENSPVAG00000005036	PSPC1	89	85.961	ENSCLAG00000005241	PSPC1	99	85.961	Chinchilla_lanigera
ENSPVAG00000005036	PSPC1	100	88.528	ENSCHOG00000008913	PSPC1	100	86.998	Choloepus_hoffmanni
ENSPVAG00000005036	PSPC1	99	86.667	ENSCPBG00000020859	PSPC1	99	85.880	Chrysemys_picta_bellii
ENSPVAG00000005036	PSPC1	59	58.442	ENSCSAVG00000003533	-	53	61.429	Ciona_savignyi
ENSPVAG00000005036	PSPC1	78	82.222	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSPVAG00000005036	PSPC1	100	94.253	ENSCGRG00001018368	Pspc1	100	92.529	Cricetulus_griseus_chok1gshd
ENSPVAG00000005036	PSPC1	100	94.253	ENSCGRG00000011724	Pspc1	100	92.529	Cricetulus_griseus_crigri
ENSPVAG00000005036	PSPC1	91	64.375	ENSCVAG00000007679	-	86	64.579	Cyprinodon_variegatus
ENSPVAG00000005036	PSPC1	99	66.165	ENSDARG00000006621	pspc1	100	67.703	Danio_rerio
ENSPVAG00000005036	PSPC1	100	94.073	ENSDNOG00000011078	PSPC1	100	93.308	Dasypus_novemcinctus
ENSPVAG00000005036	PSPC1	100	91.396	ENSDORG00000016050	Pspc1	100	89.866	Dipodomys_ordii
ENSPVAG00000005036	PSPC1	55	99.010	ENSETEG00000000502	-	72	99.010	Echinops_telfairi
ENSPVAG00000005036	PSPC1	88	58.969	ENSEBUG00000003964	-	62	72.174	Eptatretus_burgeri
ENSPVAG00000005036	PSPC1	61	45.087	ENSEBUG00000010133	pspc1	72	50.909	Eptatretus_burgeri
ENSPVAG00000005036	PSPC1	100	95.183	ENSEASG00005000119	PSPC1	99	96.883	Equus_asinus_asinus
ENSPVAG00000005036	PSPC1	100	95.183	ENSECAG00000017286	PSPC1	99	96.883	Equus_caballus
ENSPVAG00000005036	PSPC1	88	84.591	ENSEEUG00000011288	-	88	83.333	Erinaceus_europaeus
ENSPVAG00000005036	PSPC1	92	70.265	ENSELUG00000003746	pspc1	78	81.846	Esox_lucius
ENSPVAG00000005036	PSPC1	100	95.202	ENSFCAG00000027841	PSPC1	98	97.396	Felis_catus
ENSPVAG00000005036	PSPC1	90	92.719	ENSFALG00000008750	PSPC1	99	86.424	Ficedula_albicollis
ENSPVAG00000005036	PSPC1	100	92.678	ENSFDAG00000002617	PSPC1	100	91.908	Fukomys_damarensis
ENSPVAG00000005036	PSPC1	89	65.517	ENSGMOG00000015074	pspc1	86	65.032	Gadus_morhua
ENSPVAG00000005036	PSPC1	99	85.714	ENSGALG00000017142	PSPC1	99	86.486	Gallus_gallus
ENSPVAG00000005036	PSPC1	65	74.855	ENSGAFG00000006327	pspc1	68	77.134	Gambusia_affinis
ENSPVAG00000005036	PSPC1	89	64.655	ENSGACG00000014901	pspc1	92	73.089	Gasterosteus_aculeatus
ENSPVAG00000005036	PSPC1	99	86.476	ENSGAGG00000019164	PSPC1	99	85.880	Gopherus_agassizii
ENSPVAG00000005036	PSPC1	89	59.871	ENSGAGG00000017325	-	67	58.244	Gopherus_agassizii
ENSPVAG00000005036	PSPC1	100	94.264	ENSGGOG00000003414	PSPC1	98	97.150	Gorilla_gorilla
ENSPVAG00000005036	PSPC1	99	64.880	ENSHBUG00000001139	pspc1	87	69.872	Haplochromis_burtoni
ENSPVAG00000005036	PSPC1	100	94.626	ENSHGLG00000018811	PSPC1	100	92.308	Heterocephalus_glaber_female
ENSPVAG00000005036	PSPC1	67	93.064	ENSHGLG00100007962	PSPC1	100	93.064	Heterocephalus_glaber_male
ENSPVAG00000005036	PSPC1	77	66.908	ENSHCOG00000013251	pspc1	80	71.309	Hippocampus_comes
ENSPVAG00000005036	PSPC1	99	66.792	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSPVAG00000005036	PSPC1	100	93.690	ENSSTOG00000026833	PSPC1	98	96.632	Ictidomys_tridecemlineatus
ENSPVAG00000005036	PSPC1	100	93.295	ENSJJAG00000018334	Pspc1	100	92.912	Jaculus_jaculus
ENSPVAG00000005036	PSPC1	89	54.428	ENSKMAG00000013525	-	84	52.916	Kryptolebias_marmoratus
ENSPVAG00000005036	PSPC1	92	65.010	ENSLBEG00000004474	pspc1	72	75.219	Labrus_bergylta
ENSPVAG00000005036	PSPC1	99	75.560	ENSLACG00000010762	PSPC1	88	83.801	Latimeria_chalumnae
ENSPVAG00000005036	PSPC1	89	82.430	ENSLOCG00000010832	pspc1	91	82.430	Lepisosteus_oculatus
ENSPVAG00000005036	PSPC1	100	93.678	ENSLAFG00000010968	PSPC1	100	92.912	Loxodonta_africana
ENSPVAG00000005036	PSPC1	100	93.308	ENSMFAG00000032728	PSPC1	98	98.006	Macaca_fascicularis
ENSPVAG00000005036	PSPC1	100	93.308	ENSMMUG00000020262	PSPC1	100	93.117	Macaca_mulatta
ENSPVAG00000005036	PSPC1	100	93.308	ENSMNEG00000027401	PSPC1	100	93.117	Macaca_nemestrina
ENSPVAG00000005036	PSPC1	100	95.489	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSPVAG00000005036	PSPC1	89	66.392	ENSMAMG00000004333	pspc1	88	66.392	Mastacembelus_armatus
ENSPVAG00000005036	PSPC1	99	57.993	ENSMZEG00005005726	pspc1	87	59.062	Maylandia_zebra
ENSPVAG00000005036	PSPC1	78	91.379	ENSMGAG00000015134	PSPC1	100	91.379	Meleagris_gallopavo
ENSPVAG00000005036	PSPC1	88	89.588	ENSMAUG00000021067	Pspc1	99	87.636	Mesocricetus_auratus
ENSPVAG00000005036	PSPC1	100	94.626	ENSMICG00000013970	PSPC1	98	97.396	Microcebus_murinus
ENSPVAG00000005036	PSPC1	100	93.295	ENSMOCG00000006060	Pspc1	100	92.720	Microtus_ochrogaster
ENSPVAG00000005036	PSPC1	66	54.971	ENSMMOG00000004352	pspc1	58	52.439	Mola_mola
ENSPVAG00000005036	PSPC1	93	92.371	ENSMODG00000008029	PSPC1	78	91.959	Monodelphis_domestica
ENSPVAG00000005036	PSPC1	89	68.240	ENSMALG00000008914	pspc1	88	68.162	Monopterus_albus
ENSPVAG00000005036	PSPC1	100	93.499	MGP_CAROLIEiJ_G0019341	Pspc1	100	92.543	Mus_caroli
ENSPVAG00000005036	PSPC1	100	93.690	ENSMUSG00000021938	Pspc1	100	92.734	Mus_musculus
ENSPVAG00000005036	PSPC1	100	93.499	MGP_PahariEiJ_G0030359	Pspc1	100	92.543	Mus_pahari
ENSPVAG00000005036	PSPC1	100	93.690	MGP_SPRETEiJ_G0020232	Pspc1	100	92.734	Mus_spretus
ENSPVAG00000005036	PSPC1	100	95.010	ENSMPUG00000013347	PSPC1	100	94.434	Mustela_putorius_furo
ENSPVAG00000005036	PSPC1	100	93.893	ENSMLUG00000017663	PSPC1	100	94.084	Myotis_lucifugus
ENSPVAG00000005036	PSPC1	100	94.253	ENSNGAG00000011271	Pspc1	100	93.295	Nannospalax_galili
ENSPVAG00000005036	PSPC1	73	64.646	ENSNBRG00000014059	pspc1	76	68.902	Neolamprologus_brichardi
ENSPVAG00000005036	PSPC1	100	93.117	ENSNLEG00000001294	PSPC1	100	93.308	Nomascus_leucogenys
ENSPVAG00000005036	PSPC1	84	91.797	ENSMEUG00000000476	PSPC1	84	91.016	Notamacropus_eugenii
ENSPVAG00000005036	PSPC1	100	81.190	ENSODEG00000019012	-	100	81.749	Octodon_degus
ENSPVAG00000005036	PSPC1	100	83.109	ENSODEG00000007817	-	100	77.376	Octodon_degus
ENSPVAG00000005036	PSPC1	99	64.338	ENSONIG00000012010	pspc1	87	69.133	Oreochromis_niloticus
ENSPVAG00000005036	PSPC1	77	94.737	ENSOANG00000009017	-	100	94.737	Ornithorhynchus_anatinus
ENSPVAG00000005036	PSPC1	99	64.423	ENSOANG00000011381	-	99	62.500	Ornithorhynchus_anatinus
ENSPVAG00000005036	PSPC1	100	93.117	ENSOCUG00000006153	PSPC1	100	92.925	Oryctolagus_cuniculus
ENSPVAG00000005036	PSPC1	89	69.787	ENSORLG00000004232	-	87	66.316	Oryzias_latipes
ENSPVAG00000005036	PSPC1	89	68.230	ENSORLG00020000578	PSPC1	87	65.199	Oryzias_latipes_hni
ENSPVAG00000005036	PSPC1	89	69.296	ENSORLG00015017480	pspc1	87	65.618	Oryzias_latipes_hsok
ENSPVAG00000005036	PSPC1	100	94.084	ENSOGAG00000012643	PSPC1	100	93.690	Otolemur_garnettii
ENSPVAG00000005036	PSPC1	100	89.060	ENSOARG00000014163	PSPC1	100	89.060	Ovis_aries
ENSPVAG00000005036	PSPC1	90	89.032	ENSPPAG00000009836	PSPC1	93	99.085	Pan_paniscus
ENSPVAG00000005036	PSPC1	100	95.202	ENSPPRG00000008833	PSPC1	100	95.202	Panthera_pardus
ENSPVAG00000005036	PSPC1	100	80.925	ENSPTIG00000016917	PSPC1	100	80.154	Panthera_tigris_altaica
ENSPVAG00000005036	PSPC1	93	95.062	ENSPTRG00000005677	PSPC1	98	97.150	Pan_troglodytes
ENSPVAG00000005036	PSPC1	100	93.308	ENSPANG00000001992	PSPC1	96	98.006	Papio_anubis
ENSPVAG00000005036	PSPC1	82	77.882	ENSPKIG00000003578	pspc1	89	73.840	Paramormyrops_kingsleyae
ENSPVAG00000005036	PSPC1	99	85.958	ENSPSIG00000005168	PSPC1	99	86.127	Pelodiscus_sinensis
ENSPVAG00000005036	PSPC1	59	70.064	ENSPMGG00000015135	pspc1	80	73.264	Periophthalmus_magnuspinnatus
ENSPVAG00000005036	PSPC1	100	94.061	ENSPEMG00000015214	Pspc1	100	93.103	Peromyscus_maniculatus_bairdii
ENSPVAG00000005036	PSPC1	53	45.105	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPVAG00000005036	PSPC1	99	92.529	ENSPCIG00000017680	PSPC1	100	92.146	Phascolarctos_cinereus
ENSPVAG00000005036	PSPC1	93	66.004	ENSPFOG00000003362	pspc1	88	67.941	Poecilia_formosa
ENSPVAG00000005036	PSPC1	69	65.097	ENSPLAG00000004407	-	51	61.035	Poecilia_latipinna
ENSPVAG00000005036	PSPC1	93	66.004	ENSPLAG00000011540	pspc1	87	67.941	Poecilia_latipinna
ENSPVAG00000005036	PSPC1	93	65.606	ENSPMEG00000008322	pspc1	87	67.516	Poecilia_mexicana
ENSPVAG00000005036	PSPC1	70	64.402	ENSPMEG00000001025	-	51	61.035	Poecilia_mexicana
ENSPVAG00000005036	PSPC1	93	65.606	ENSPREG00000007786	pspc1	87	67.516	Poecilia_reticulata
ENSPVAG00000005036	PSPC1	100	94.242	ENSPPYG00000005186	PSPC1	100	93.282	Pongo_abelii
ENSPVAG00000005036	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPVAG00000005036	PSPC1	100	89.695	ENSPCOG00000014364	PSPC1	100	89.293	Propithecus_coquereli
ENSPVAG00000005036	PSPC1	99	57.993	ENSPNYG00000008893	pspc1	87	59.062	Pundamilia_nyererei
ENSPVAG00000005036	PSPC1	99	67.542	ENSPNAG00000016511	pspc1	89	72.611	Pygocentrus_nattereri
ENSPVAG00000005036	PSPC1	100	93.295	ENSRNOG00000020782	Pspc1	100	92.912	Rattus_norvegicus
ENSPVAG00000005036	PSPC1	93	95.277	ENSRBIG00000036057	PSPC1	100	95.330	Rhinopithecus_bieti
ENSPVAG00000005036	PSPC1	100	94.073	ENSRROG00000036334	PSPC1	100	94.750	Rhinopithecus_roxellana
ENSPVAG00000005036	PSPC1	80	84.988	ENSSBOG00000028172	PSPC1	90	94.928	Saimiri_boliviensis_boliviensis
ENSPVAG00000005036	PSPC1	100	87.238	ENSSHAG00000004696	PSPC1	100	86.857	Sarcophilus_harrisii
ENSPVAG00000005036	PSPC1	82	78.824	ENSSFOG00015001395	pspc1	99	74.370	Scleropages_formosus
ENSPVAG00000005036	PSPC1	94	64.497	ENSSMAG00000001761	pspc1	82	76.667	Scophthalmus_maximus
ENSPVAG00000005036	PSPC1	89	67.879	ENSSDUG00000010651	pspc1	76	73.611	Seriola_dumerili
ENSPVAG00000005036	PSPC1	89	63.656	ENSSLDG00000004284	pspc1	87	60.341	Seriola_lalandi_dorsalis
ENSPVAG00000005036	PSPC1	100	89.017	ENSSARG00000000888	PSPC1	100	89.017	Sorex_araneus
ENSPVAG00000005036	PSPC1	90	54.545	ENSSPUG00000001136	-	53	61.173	Sphenodon_punctatus
ENSPVAG00000005036	PSPC1	99	74.053	ENSSPUG00000008550	PSPC1	99	74.423	Sphenodon_punctatus
ENSPVAG00000005036	PSPC1	92	66.270	ENSSPAG00000001921	pspc1	88	67.556	Stegastes_partitus
ENSPVAG00000005036	PSPC1	100	94.061	ENSSSCG00000009569	PSPC1	99	96.883	Sus_scrofa
ENSPVAG00000005036	PSPC1	90	92.719	ENSTGUG00000011295	PSPC1	100	92.719	Taeniopygia_guttata
ENSPVAG00000005036	PSPC1	89	62.420	ENSTRUG00000011335	pspc1	87	61.359	Takifugu_rubripes
ENSPVAG00000005036	PSPC1	89	64.530	ENSTNIG00000010358	pspc1	88	63.812	Tetraodon_nigroviridis
ENSPVAG00000005036	PSPC1	100	75.769	ENSTBEG00000002361	PSPC1	100	74.808	Tupaia_belangeri
ENSPVAG00000005036	PSPC1	100	94.808	ENSTTRG00000003343	PSPC1	100	93.642	Tursiops_truncatus
ENSPVAG00000005036	PSPC1	67	97.421	ENSUAMG00000012309	PSPC1	100	97.421	Ursus_americanus
ENSPVAG00000005036	PSPC1	93	95.072	ENSUMAG00000013993	PSPC1	98	97.714	Ursus_maritimus
ENSPVAG00000005036	PSPC1	77	95.489	ENSVPAG00000010029	PSPC1	100	95.489	Vicugna_pacos
ENSPVAG00000005036	PSPC1	100	95.010	ENSVVUG00000006414	PSPC1	100	97.656	Vulpes_vulpes
ENSPVAG00000005036	PSPC1	66	72.905	ENSXCOG00000017438	pspc1	77	76.687	Xiphophorus_couchianus
ENSPVAG00000005036	PSPC1	66	73.184	ENSXMAG00000007929	pspc1	78	76.524	Xiphophorus_maculatus