EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPVAG00000005069 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 22230 bases
Position: chrGeneScaffold_1889:255299-277528
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000004796	RNA_pol_Rpb1_5	PF04998.17	1.1e-96	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	1	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	2	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	3	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	4	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	5	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	6	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	7	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	8	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	9	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	10	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	11	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	12	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	13	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	14	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	15	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	16	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	17	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	18	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	19	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	20	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	21	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	22	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	23	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	24	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	25	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	26	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	27	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	28	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	29	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	30	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	31	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	32	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	33	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	34	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	35	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	36	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	37	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	38	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	39	40
ENSPVAP00000004796	RNA_pol_Rpb1_R	PF05001.13	2.3e-27	40	40
ENSPVAP00000004796	RNA_pol_Rpb1_4	PF05000.17	2.6e-38	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_2	PF00623.20	8e-75	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_3	PF04983.18	6e-50	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_1	PF04997.12	3.8e-109	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_7	PF04990.12	1.4e-54	1	1
ENSPVAP00000004796	RNA_pol_Rpb1_6	PF04992.14	1e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000005069	-	5901	-	ENSPVAP00000004796	1966 (aa)	-	UPI00018B361A

Gene Model

Click here to download ENSPVAG00000005069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000005069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPVAG00000005069	-	51	51.899	ENSPVAG00000012674	POLR1A	66	33.636
ENSPVAG00000005069	-	66	38.791	ENSPVAG00000015553	POLR3A	90	38.646

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000005069	-	82	94.172	ENSAPOG00000006552	polr2a	91	94.165	Acanthochromis_polyacanthus
ENSPVAG00000005069	-	100	99.442	ENSAMEG00000016265	-	100	99.442	Ailuropoda_melanoleuca
ENSPVAG00000005069	-	82	92.188	ENSACIG00000015982	polr2a	81	92.179	Amphilophus_citrinellus
ENSPVAG00000005069	-	97	92.126	ENSAOCG00000004255	polr2a	96	92.117	Amphiprion_ocellaris
ENSPVAG00000005069	-	82	94.234	ENSAPEG00000012623	polr2a	82	94.227	Amphiprion_percula
ENSPVAG00000005069	-	82	94.110	ENSATEG00000019644	polr2a	82	94.103	Anabas_testudineus
ENSPVAG00000005069	-	100	98.223	ENSACAG00000014561	POLR2A	100	98.223	Anolis_carolinensis
ENSPVAG00000005069	-	100	99.746	ENSANAG00000020093	-	100	99.746	Aotus_nancymaae
ENSPVAG00000005069	-	82	93.924	ENSACLG00000006735	polr2a	82	93.917	Astatotilapia_calliptera
ENSPVAG00000005069	-	82	94.482	ENSAMXG00000020046	polr2a	82	94.475	Astyanax_mexicanus
ENSPVAG00000005069	-	100	99.695	ENSBTAG00000046765	POLR2A	100	99.695	Bos_taurus
ENSPVAG00000005069	-	94	69.840	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSPVAG00000005069	-	100	99.289	ENSCAFG00000016532	POLR2A	100	99.441	Canis_familiaris
ENSPVAG00000005069	-	100	98.782	ENSCAFG00020007929	-	100	98.782	Canis_lupus_dingo
ENSPVAG00000005069	-	100	99.695	ENSCHIG00000027173	-	100	99.695	Capra_hircus
ENSPVAG00000005069	-	100	97.259	ENSTSYG00000012803	-	100	97.766	Carlito_syrichta
ENSPVAG00000005069	-	98	95.386	ENSCAPG00000001882	-	98	98.290	Cavia_aperea
ENSPVAG00000005069	-	100	95.410	ENSCPOG00000014812	-	98	98.261	Cavia_porcellus
ENSPVAG00000005069	-	100	99.746	ENSCCAG00000020938	-	100	99.746	Cebus_capucinus
ENSPVAG00000005069	-	100	99.695	ENSCATG00000013680	-	100	99.695	Cercocebus_atys
ENSPVAG00000005069	-	100	99.594	ENSCLAG00000012196	-	100	99.594	Chinchilla_lanigera
ENSPVAG00000005069	-	82	90.438	ENSCSAG00000011644	-	82	90.500	Chlorocebus_sabaeus
ENSPVAG00000005069	-	100	93.902	ENSCPBG00000012697	POLR2A	100	93.902	Chrysemys_picta_bellii
ENSPVAG00000005069	-	99	76.306	ENSCING00000007884	-	99	76.565	Ciona_intestinalis
ENSPVAG00000005069	-	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSPVAG00000005069	-	100	99.036	ENSCANG00000010622	-	100	99.036	Colobus_angolensis_palliatus
ENSPVAG00000005069	-	100	94.109	ENSCGRG00001003538	Polr2a	100	94.411	Cricetulus_griseus_chok1gshd
ENSPVAG00000005069	-	96	95.231	ENSCGRG00000012105	Polr2a	95	95.767	Cricetulus_griseus_crigri
ENSPVAG00000005069	-	82	93.490	ENSCSEG00000002635	polr2a	82	93.482	Cynoglossus_semilaevis
ENSPVAG00000005069	-	82	94.358	ENSCVAG00000005156	polr2a	82	94.351	Cyprinodon_variegatus
ENSPVAG00000005069	-	82	94.176	ENSDARG00000099966	polr2a	82	94.169	Danio_rerio
ENSPVAG00000005069	-	100	96.751	ENSDNOG00000016482	-	100	96.751	Dasypus_novemcinctus
ENSPVAG00000005069	-	100	99.746	ENSDORG00000008667	Polr2a	100	99.746	Dipodomys_ordii
ENSPVAG00000005069	-	99	69.836	FBgn0003277	RpII215	99	74.641	Drosophila_melanogaster
ENSPVAG00000005069	-	94	87.820	ENSETEG00000002540	-	94	84.449	Echinops_telfairi
ENSPVAG00000005069	-	81	87.773	ENSEBUG00000013967	polr2a	82	87.181	Eptatretus_burgeri
ENSPVAG00000005069	-	100	96.701	ENSEASG00005019114	-	100	96.802	Equus_asinus_asinus
ENSPVAG00000005069	-	100	99.695	ENSECAG00000018485	POLR2A	100	99.695	Equus_caballus
ENSPVAG00000005069	-	87	99.466	ENSEEUG00000001154	-	95	99.466	Erinaceus_europaeus
ENSPVAG00000005069	-	89	89.710	ENSELUG00000014284	polr2a	84	90.376	Esox_lucius
ENSPVAG00000005069	-	100	99.695	ENSFDAG00000008287	-	100	99.695	Fukomys_damarensis
ENSPVAG00000005069	-	85	94.358	ENSFHEG00000001768	polr2a	98	94.351	Fundulus_heteroclitus
ENSPVAG00000005069	-	99	90.115	ENSGMOG00000007725	polr2a	99	90.170	Gadus_morhua
ENSPVAG00000005069	-	98	94.366	ENSGAFG00000005389	polr2a	99	92.117	Gambusia_affinis
ENSPVAG00000005069	-	99	90.502	ENSGACG00000019366	polr2a	99	88.005	Gasterosteus_aculeatus
ENSPVAG00000005069	-	100	97.923	ENSGGOG00000014800	-	100	97.923	Gorilla_gorilla
ENSPVAG00000005069	-	85	93.924	ENSHBUG00000018937	polr2a	99	93.917	Haplochromis_burtoni
ENSPVAG00000005069	-	100	99.695	ENSHGLG00000012381	POLR2A	100	99.695	Heterocephalus_glaber_female
ENSPVAG00000005069	-	100	99.695	ENSHGLG00100014843	POLR2A	100	99.695	Heterocephalus_glaber_male
ENSPVAG00000005069	-	82	93.614	ENSHCOG00000011874	polr2a	82	93.606	Hippocampus_comes
ENSPVAG00000005069	-	82	93.862	ENSIPUG00000002613	Polr2a	82	93.855	Ictalurus_punctatus
ENSPVAG00000005069	-	100	99.746	ENSSTOG00000001304	-	100	99.746	Ictidomys_tridecemlineatus
ENSPVAG00000005069	-	100	99.645	ENSJJAG00000013049	Polr2a	100	99.645	Jaculus_jaculus
ENSPVAG00000005069	-	80	93.678	ENSKMAG00000016343	polr2a	86	89.286	Kryptolebias_marmoratus
ENSPVAG00000005069	-	82	93.862	ENSLBEG00000027652	polr2a	82	93.855	Labrus_bergylta
ENSPVAG00000005069	-	80	86.844	ENSLACG00000012071	POLR2A	81	86.899	Latimeria_chalumnae
ENSPVAG00000005069	-	91	94.525	ENSLOCG00000013863	polr2a	99	94.224	Lepisosteus_oculatus
ENSPVAG00000005069	-	100	99.695	ENSLAFG00000008626	-	100	99.695	Loxodonta_africana
ENSPVAG00000005069	-	50	98.264	ENSMFAG00000007042	-	99	98.264	Macaca_fascicularis
ENSPVAG00000005069	-	100	99.695	ENSMMUG00000023620	-	100	99.695	Macaca_mulatta
ENSPVAG00000005069	-	100	98.988	ENSMNEG00000040407	-	100	98.988	Macaca_nemestrina
ENSPVAG00000005069	-	99	94.970	ENSMLEG00000030263	-	99	98.264	Mandrillus_leucophaeus
ENSPVAG00000005069	-	82	93.986	ENSMAMG00000003351	polr2a	82	93.979	Mastacembelus_armatus
ENSPVAG00000005069	-	82	93.924	ENSMZEG00005021429	polr2a	82	93.917	Maylandia_zebra
ENSPVAG00000005069	-	50	100.000	ENSMAUG00000021055	-	99	100.000	Mesocricetus_auratus
ENSPVAG00000005069	-	100	99.645	ENSMICG00000013372	-	100	99.645	Microcebus_murinus
ENSPVAG00000005069	-	100	92.974	ENSMOCG00000018279	Polr2a	100	93.080	Microtus_ochrogaster
ENSPVAG00000005069	-	87	93.490	ENSMMOG00000012515	polr2a	95	93.482	Mola_mola
ENSPVAG00000005069	-	100	99.289	ENSMODG00000007009	-	100	99.289	Monodelphis_domestica
ENSPVAG00000005069	-	94	91.399	ENSMALG00000008716	polr2a	99	92.055	Monopterus_albus
ENSPVAG00000005069	-	100	99.695	MGP_CAROLIEiJ_G0016587	Polr2a	100	99.695	Mus_caroli
ENSPVAG00000005069	-	100	99.695	ENSMUSG00000005198	Polr2a	100	99.695	Mus_musculus
ENSPVAG00000005069	-	100	97.926	MGP_PahariEiJ_G0017718	Polr2a	100	97.926	Mus_pahari
ENSPVAG00000005069	-	100	99.695	MGP_SPRETEiJ_G0017423	Polr2a	100	99.695	Mus_spretus
ENSPVAG00000005069	-	100	99.645	ENSMPUG00000009648	-	100	99.645	Mustela_putorius_furo
ENSPVAG00000005069	-	100	99.239	ENSMLUG00000009088	-	100	99.239	Myotis_lucifugus
ENSPVAG00000005069	-	100	99.746	ENSNGAG00000002543	Polr2a	100	99.746	Nannospalax_galili
ENSPVAG00000005069	-	82	91.878	ENSNBRG00000002005	polr2a	81	91.868	Neolamprologus_brichardi
ENSPVAG00000005069	-	100	98.531	ENSNLEG00000009460	-	100	98.531	Nomascus_leucogenys
ENSPVAG00000005069	-	94	99.346	ENSMEUG00000008611	-	93	99.346	Notamacropus_eugenii
ENSPVAG00000005069	-	80	99.684	ENSOPRG00000015116	-	99	99.684	Ochotona_princeps
ENSPVAG00000005069	-	100	92.043	ENSODEG00000017674	-	100	94.924	Octodon_degus
ENSPVAG00000005069	-	82	94.110	ENSONIG00000009231	polr2a	82	94.103	Oreochromis_niloticus
ENSPVAG00000005069	-	100	97.159	ENSOCUG00000017929	-	100	97.481	Oryctolagus_cuniculus
ENSPVAG00000005069	-	82	93.986	ENSORLG00000006431	polr2a	82	93.979	Oryzias_latipes
ENSPVAG00000005069	-	82	93.986	ENSORLG00020010235	polr2a	82	93.979	Oryzias_latipes_hni
ENSPVAG00000005069	-	82	93.986	ENSORLG00015007075	polr2a	82	93.979	Oryzias_latipes_hsok
ENSPVAG00000005069	-	96	95.161	ENSOMEG00000010713	polr2a	100	94.096	Oryzias_melastigma
ENSPVAG00000005069	-	100	99.594	ENSOGAG00000033608	-	100	99.594	Otolemur_garnettii
ENSPVAG00000005069	-	98	99.524	ENSOARG00000013874	-	100	99.524	Ovis_aries
ENSPVAG00000005069	-	93	96.939	ENSPPAG00000043734	-	100	97.157	Pan_paniscus
ENSPVAG00000005069	-	100	98.531	ENSPTRG00000008691	POLR2A	100	98.531	Pan_troglodytes
ENSPVAG00000005069	-	100	99.036	ENSPANG00000024099	-	100	99.036	Papio_anubis
ENSPVAG00000005069	-	77	92.528	ENSPKIG00000005727	polr2a	85	92.528	Paramormyrops_kingsleyae
ENSPVAG00000005069	-	98	96.175	ENSPSIG00000014006	POLR2A	100	96.175	Pelodiscus_sinensis
ENSPVAG00000005069	-	100	93.921	ENSPMGG00000019734	polr2a	99	94.351	Periophthalmus_magnuspinnatus
ENSPVAG00000005069	-	100	99.746	ENSPEMG00000012521	Polr2a	100	99.746	Peromyscus_maniculatus_bairdii
ENSPVAG00000005069	-	96	87.048	ENSPCIG00000028851	-	96	87.048	Phascolarctos_cinereus
ENSPVAG00000005069	-	85	94.296	ENSPFOG00000007890	polr2a	99	94.289	Poecilia_formosa
ENSPVAG00000005069	-	85	94.296	ENSPLAG00000007399	polr2a	99	94.289	Poecilia_latipinna
ENSPVAG00000005069	-	85	94.296	ENSPMEG00000002071	polr2a	99	94.289	Poecilia_mexicana
ENSPVAG00000005069	-	82	94.234	ENSPREG00000013122	polr2a	82	94.227	Poecilia_reticulata
ENSPVAG00000005069	-	100	96.552	ENSPPYG00000007924	-	100	98.682	Pongo_abelii
ENSPVAG00000005069	-	92	99.737	ENSPCAG00000006951	-	92	99.737	Procavia_capensis
ENSPVAG00000005069	-	100	98.539	ENSPCOG00000025260	-	100	98.539	Propithecus_coquereli
ENSPVAG00000005069	-	83	94.150	ENSPNYG00000022340	polr2a	82	93.979	Pundamilia_nyererei
ENSPVAG00000005069	-	82	94.296	ENSPNAG00000011237	polr2a	82	94.289	Pygocentrus_nattereri
ENSPVAG00000005069	-	100	99.645	ENSRNOG00000028834	Polr2a	100	99.645	Rattus_norvegicus
ENSPVAG00000005069	-	82	99.255	ENSRBIG00000002471	-	100	96.294	Rhinopithecus_bieti
ENSPVAG00000005069	-	100	99.340	ENSRROG00000029583	-	100	99.340	Rhinopithecus_roxellana
ENSPVAG00000005069	-	83	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSPVAG00000005069	-	100	99.746	ENSSBOG00000000808	-	100	99.746	Saimiri_boliviensis_boliviensis
ENSPVAG00000005069	-	92	99.131	ENSSHAG00000002858	-	84	99.131	Sarcophilus_harrisii
ENSPVAG00000005069	-	82	94.234	ENSSFOG00015023275	polr2a	82	94.227	Scleropages_formosus
ENSPVAG00000005069	-	82	93.614	ENSSMAG00000009137	polr2a	82	93.606	Scophthalmus_maximus
ENSPVAG00000005069	-	82	94.110	ENSSDUG00000020466	polr2a	82	94.103	Seriola_dumerili
ENSPVAG00000005069	-	82	94.110	ENSSLDG00000020613	polr2a	82	94.103	Seriola_lalandi_dorsalis
ENSPVAG00000005069	-	97	94.797	ENSSARG00000005875	-	99	94.797	Sorex_araneus
ENSPVAG00000005069	-	100	94.172	ENSSPAG00000016741	polr2a	94	94.165	Stegastes_partitus
ENSPVAG00000005069	-	100	98.985	ENSSSCG00000028278	-	100	98.985	Sus_scrofa
ENSPVAG00000005069	-	99	88.524	ENSTRUG00000012320	polr2a	81	88.509	Takifugu_rubripes
ENSPVAG00000005069	-	99	92.622	ENSTNIG00000010136	polr2a	100	92.613	Tetraodon_nigroviridis
ENSPVAG00000005069	-	75	99.869	ENSTBEG00000013294	-	58	99.869	Tupaia_belangeri
ENSPVAG00000005069	-	100	98.374	ENSTTRG00000014273	-	100	98.374	Tursiops_truncatus
ENSPVAG00000005069	-	96	96.594	ENSUAMG00000014866	-	100	99.257	Ursus_americanus
ENSPVAG00000005069	-	99	97.143	ENSUMAG00000015732	-	100	97.143	Ursus_maritimus
ENSPVAG00000005069	-	65	98.913	ENSVPAG00000008842	-	76	98.913	Vicugna_pacos
ENSPVAG00000005069	-	100	96.351	ENSVVUG00000027878	-	100	98.274	Vulpes_vulpes
ENSPVAG00000005069	-	99	96.766	ENSXETG00000012465	polr2a	100	96.766	Xenopus_tropicalis
ENSPVAG00000005069	-	89	92.105	ENSXCOG00000001804	polr2a	94	92.055	Xiphophorus_couchianus
ENSPVAG00000005069	-	82	94.234	ENSXMAG00000015687	polr2a	82	94.227	Xiphophorus_maculatus