EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPVAG00000005324 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Pteropus_vampyrus
Status
putative
Strand
Plus strand
Length
32471 bases
Position
chrGeneScaffold_2233:124608-157078
Accession
105295435
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPVAP00000005041CPSF73-100_CPF11718.81.2e-5511
ENSPVAP00000005041Beta-CaspPF10996.82.9e-3411
ENSPVAP00000005041Lactamase_BPF00753.276.7e-1911
ENSPVAP00000005041RMMBLPF07521.129e-2211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPVAT00000005325CPSF3-2012055-ENSPVAP00000005041684 (aa)XP_011363416UPI00018B3381
Gene Model
Click here to download ENSPVAG00000005324's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000005324's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPVAG00000005324CPSF37138.340ENSPVAG00000001017INTS118238.340
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPVAG00000005324CPSF39999.413ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPVAG00000005324CPSF39985.441ENSAPOG00000022087cpsf39885.441Acanthochromis_polyacanthus
ENSPVAG00000005324CPSF37396.994ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSPVAG00000005324CPSF39999.560ENSAMEG00000008493CPSF39999.560Ailuropoda_melanoleuca
ENSPVAG00000005324CPSF39286.486ENSACIG00000023663CPSF39986.486Amphilophus_citrinellus
ENSPVAG00000005324CPSF39282.830ENSACIG00000009846cpsf39982.830Amphilophus_citrinellus
ENSPVAG00000005324CPSF39988.071ENSAOCG00000010077CPSF39888.071Amphiprion_ocellaris
ENSPVAG00000005324CPSF39985.441ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSPVAG00000005324CPSF39988.071ENSAPEG00000021167CPSF39888.071Amphiprion_percula
ENSPVAG00000005324CPSF39985.588ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSPVAG00000005324CPSF39983.358ENSATEG00000014525CPSF39883.358Anabas_testudineus
ENSPVAG00000005324CPSF39985.316ENSATEG00000003959cpsf39985.316Anabas_testudineus
ENSPVAG00000005324CPSF39895.224ENSAPLG00000006941CPSF39895.224Anas_platyrhynchos
ENSPVAG00000005324CPSF39392.744ENSACAG00000001759CPSF39992.744Anolis_carolinensis
ENSPVAG00000005324CPSF39992.815ENSANAG00000031254CPSF39993.243Aotus_nancymaae
ENSPVAG00000005324CPSF39286.328ENSACLG00000018846CPSF39986.328Astatotilapia_calliptera
ENSPVAG00000005324CPSF39785.736ENSACLG00000014484cpsf39985.736Astatotilapia_calliptera
ENSPVAG00000005324CPSF39988.218ENSAMXG00000004786cpsf39888.218Astyanax_mexicanus
ENSPVAG00000005324CPSF39999.560ENSBTAG00000019735CPSF39999.560Bos_taurus
ENSPVAG00000005324CPSF39258.605WBGene00013460cpsf-39158.605Caenorhabditis_elegans
ENSPVAG00000005324CPSF39999.267ENSCJAG00000006276CPSF39999.267Callithrix_jacchus
ENSPVAG00000005324CPSF39999.560ENSCAFG00000003375CPSF39599.560Canis_familiaris
ENSPVAG00000005324CPSF390100.000ENSCAFG00020026799CPSF3100100.000Canis_lupus_dingo
ENSPVAG00000005324CPSF39999.560ENSCHIG00000013973CPSF39999.560Capra_hircus
ENSPVAG00000005324CPSF39999.413ENSTSYG00000002967CPSF39999.413Carlito_syrichta
ENSPVAG00000005324CPSF39797.744ENSCAPG00000013851CPSF39997.744Cavia_aperea
ENSPVAG00000005324CPSF39997.801ENSCPOG00000011299CPSF39997.801Cavia_porcellus
ENSPVAG00000005324CPSF39999.267ENSCCAG00000036730CPSF39999.267Cebus_capucinus
ENSPVAG00000005324CPSF39996.779ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSPVAG00000005324CPSF39997.507ENSCLAG00000002727CPSF39997.507Chinchilla_lanigera
ENSPVAG00000005324CPSF39991.642ENSCSAG00000007125CPSF39991.642Chlorocebus_sabaeus
ENSPVAG00000005324CPSF386100.000ENSCHOG00000000180CPSF38572.183Choloepus_hoffmanni
ENSPVAG00000005324CPSF39995.461ENSCPBG00000014074CPSF39995.461Chrysemys_picta_bellii
ENSPVAG00000005324CPSF39968.129ENSCING00000007214-9768.129Ciona_intestinalis
ENSPVAG00000005324CPSF39986.091ENSCANG00000034435CPSF39986.091Colobus_angolensis_palliatus
ENSPVAG00000005324CPSF39999.120ENSCGRG00001013134Cpsf39999.120Cricetulus_griseus_chok1gshd
ENSPVAG00000005324CPSF39999.120ENSCGRG00000018319Cpsf39999.120Cricetulus_griseus_crigri
ENSPVAG00000005324CPSF39986.912ENSCSEG00000002021CPSF39986.687Cynoglossus_semilaevis
ENSPVAG00000005324CPSF39988.365ENSCVAG00000015067CPSF39888.365Cyprinodon_variegatus
ENSPVAG00000005324CPSF39988.954ENSDARG00000027649cpsf39888.954Danio_rerio
ENSPVAG00000005324CPSF39997.804ENSDNOG00000008940CPSF39597.804Dasypus_novemcinctus
ENSPVAG00000005324CPSF39599.232ENSDORG00000014263Cpsf310099.232Dipodomys_ordii
ENSPVAG00000005324CPSF39967.449FBgn0261065Cpsf739967.449Drosophila_melanogaster
ENSPVAG00000005324CPSF39585.868ENSETEG00000003893CPSF310085.868Echinops_telfairi
ENSPVAG00000005324CPSF39978.623ENSEBUG00000009018cpsf39878.766Eptatretus_burgeri
ENSPVAG00000005324CPSF39999.560ENSEASG00005003970CPSF39999.560Equus_asinus_asinus
ENSPVAG00000005324CPSF39999.560ENSECAG00000019911CPSF39999.560Equus_caballus
ENSPVAG00000005324CPSF39984.164ENSEEUG00000015422CPSF39984.164Erinaceus_europaeus
ENSPVAG00000005324CPSF39988.106ENSELUG00000013775cpsf39988.106Esox_lucius
ENSPVAG00000005324CPSF39999.560ENSFCAG00000007852CPSF39999.560Felis_catus
ENSPVAG00000005324CPSF39495.504ENSFALG00000006572CPSF39995.504Ficedula_albicollis
ENSPVAG00000005324CPSF39997.072ENSFDAG00000006317CPSF39997.072Fukomys_damarensis
ENSPVAG00000005324CPSF35968.704ENSFHEG00000012186CPSF39968.704Fundulus_heteroclitus
ENSPVAG00000005324CPSF39985.147ENSFHEG00000014774cpsf39885.147Fundulus_heteroclitus
ENSPVAG00000005324CPSF39986.892ENSGMOG00000003157cpsf39886.892Gadus_morhua
ENSPVAG00000005324CPSF39994.845ENSGALG00000016424CPSF39994.471Gallus_gallus
ENSPVAG00000005324CPSF39283.121ENSGAFG00000019449cpsf39983.121Gambusia_affinis
ENSPVAG00000005324CPSF39988.235ENSGAFG00000008016CPSF39888.235Gambusia_affinis
ENSPVAG00000005324CPSF36893.576ENSGAGG00000025583CPSF39393.576Gopherus_agassizii
ENSPVAG00000005324CPSF39997.131ENSGGOG00000001757CPSF39999.526Gorilla_gorilla
ENSPVAG00000005324CPSF35981.436ENSHBUG00000014332CPSF39981.436Haplochromis_burtoni
ENSPVAG00000005324CPSF39985.630ENSHBUG00000001188cpsf39985.630Haplochromis_burtoni
ENSPVAG00000005324CPSF39997.067ENSHGLG00000000666CPSF39997.067Heterocephalus_glaber_female
ENSPVAG00000005324CPSF39997.067ENSHGLG00100007765CPSF39997.067Heterocephalus_glaber_male
ENSPVAG00000005324CPSF39984.875ENSHCOG00000007251cpsf39984.875Hippocampus_comes
ENSPVAG00000005324CPSF39986.598ENSHCOG00000015957CPSF39786.598Hippocampus_comes
ENSPVAG00000005324CPSF39987.040ENSIPUG00000023488cpsf39887.040Ictalurus_punctatus
ENSPVAG00000005324CPSF39998.974ENSSTOG00000004476CPSF39998.974Ictidomys_tridecemlineatus
ENSPVAG00000005324CPSF39998.094ENSJJAG00000023415Cpsf39998.094Jaculus_jaculus
ENSPVAG00000005324CPSF39987.629ENSKMAG00000007317CPSF39887.629Kryptolebias_marmoratus
ENSPVAG00000005324CPSF39984.728ENSKMAG00000002806cpsf39984.728Kryptolebias_marmoratus
ENSPVAG00000005324CPSF35579.893ENSLBEG00000015018-9979.893Labrus_bergylta
ENSPVAG00000005324CPSF39979.001ENSLBEG00000020569cpsf39479.001Labrus_bergylta
ENSPVAG00000005324CPSF39589.198ENSLBEG00000013492CPSF39889.198Labrus_bergylta
ENSPVAG00000005324CPSF39983.676ENSLACG00000008308CPSF39883.676Latimeria_chalumnae
ENSPVAG00000005324CPSF39989.296ENSLOCG00000016823cpsf39889.296Lepisosteus_oculatus
ENSPVAG00000005324CPSF39997.640ENSLAFG00000009467CPSF39997.640Loxodonta_africana
ENSPVAG00000005324CPSF39999.413ENSMFAG00000001339CPSF39999.413Macaca_fascicularis
ENSPVAG00000005324CPSF39499.380ENSMMUG00000018038CPSF39999.380Macaca_mulatta
ENSPVAG00000005324CPSF39986.657ENSMNEG00000039447CPSF39986.657Macaca_nemestrina
ENSPVAG00000005324CPSF39999.560ENSMLEG00000026825CPSF39999.560Mandrillus_leucophaeus
ENSPVAG00000005324CPSF39285.420ENSMAMG00000008835CPSF39985.420Mastacembelus_armatus
ENSPVAG00000005324CPSF39985.735ENSMAMG00000003076cpsf39885.735Mastacembelus_armatus
ENSPVAG00000005324CPSF39988.513ENSMZEG00005006258CPSF39888.513Maylandia_zebra
ENSPVAG00000005324CPSF39985.630ENSMZEG00005014358cpsf39985.630Maylandia_zebra
ENSPVAG00000005324CPSF39794.887ENSMGAG00000013995CPSF39994.887Meleagris_gallopavo
ENSPVAG00000005324CPSF35597.594ENSMAUG00000000166Cpsf39997.594Mesocricetus_auratus
ENSPVAG00000005324CPSF39993.695ENSMICG00000002363CPSF39993.695Microcebus_murinus
ENSPVAG00000005324CPSF39994.282ENSMOCG00000020067Cpsf39994.282Microtus_ochrogaster
ENSPVAG00000005324CPSF39482.663ENSMMOG00000018212CPSF39882.663Mola_mola
ENSPVAG00000005324CPSF37377.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSPVAG00000005324CPSF39995.936ENSMODG00000014703CPSF39995.936Monodelphis_domestica
ENSPVAG00000005324CPSF39383.412ENSMALG00000011474CPSF39983.412Monopterus_albus
ENSPVAG00000005324CPSF39986.070ENSMALG00000016416cpsf39986.070Monopterus_albus
ENSPVAG00000005324CPSF39998.974MGP_CAROLIEiJ_G0017640Cpsf39998.974Mus_caroli
ENSPVAG00000005324CPSF39998.974ENSMUSG00000054309Cpsf39998.974Mus_musculus
ENSPVAG00000005324CPSF39998.827MGP_PahariEiJ_G0029397Cpsf39998.827Mus_pahari
ENSPVAG00000005324CPSF39998.974MGP_SPRETEiJ_G0018481Cpsf39998.974Mus_spretus
ENSPVAG00000005324CPSF39998.975ENSMPUG00000013213CPSF39998.975Mustela_putorius_furo
ENSPVAG00000005324CPSF39998.389ENSMLUG00000010636CPSF39998.389Myotis_lucifugus
ENSPVAG00000005324CPSF39998.974ENSNGAG00000019836Cpsf39998.974Nannospalax_galili
ENSPVAG00000005324CPSF39286.328ENSNBRG00000010525CPSF39986.328Neolamprologus_brichardi
ENSPVAG00000005324CPSF39985.191ENSNBRG00000004770cpsf39985.191Neolamprologus_brichardi
ENSPVAG00000005324CPSF39999.413ENSNLEG00000013359CPSF39999.413Nomascus_leucogenys
ENSPVAG00000005324CPSF39965.154ENSMEUG00000013117-9965.154Notamacropus_eugenii
ENSPVAG00000005324CPSF39989.898ENSOPRG00000008902CPSF39989.898Ochotona_princeps
ENSPVAG00000005324CPSF39997.067ENSODEG00000003129CPSF39997.067Octodon_degus
ENSPVAG00000005324CPSF39985.777ENSONIG00000018812cpsf39985.777Oreochromis_niloticus
ENSPVAG00000005324CPSF38296.263ENSOANG00000008577CPSF39996.263Ornithorhynchus_anatinus
ENSPVAG00000005324CPSF39999.120ENSOCUG00000003728CPSF39999.120Oryctolagus_cuniculus
ENSPVAG00000005324CPSF39983.871ENSORLG00000018854cpsf39983.871Oryzias_latipes
ENSPVAG00000005324CPSF39983.724ENSORLG00020013331cpsf39983.724Oryzias_latipes_hni
ENSPVAG00000005324CPSF39983.871ENSORLG00015011017cpsf39983.871Oryzias_latipes_hsok
ENSPVAG00000005324CPSF39984.018ENSOMEG00000010647cpsf39484.018Oryzias_melastigma
ENSPVAG00000005324CPSF39989.443ENSOGAG00000001680CPSF39989.443Otolemur_garnettii
ENSPVAG00000005324CPSF39999.560ENSOARG00000015073CPSF39999.560Ovis_aries
ENSPVAG00000005324CPSF39999.560ENSPPAG00000042457CPSF39999.560Pan_paniscus
ENSPVAG00000005324CPSF39999.267ENSPPRG00000016790CPSF39999.267Panthera_pardus
ENSPVAG00000005324CPSF39999.263ENSPTIG00000003920CPSF39999.263Panthera_tigris_altaica
ENSPVAG00000005324CPSF39999.560ENSPTRG00000011638CPSF39999.560Pan_troglodytes
ENSPVAG00000005324CPSF39999.267ENSPANG00000016798CPSF39999.267Papio_anubis
ENSPVAG00000005324CPSF39989.574ENSPKIG00000023646cpsf39989.574Paramormyrops_kingsleyae
ENSPVAG00000005324CPSF39993.979ENSPSIG00000016144CPSF39993.979Pelodiscus_sinensis
ENSPVAG00000005324CPSF35978.765ENSPMGG00000015311CPSF39978.765Periophthalmus_magnuspinnatus
ENSPVAG00000005324CPSF38385.340ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSPVAG00000005324CPSF39998.387ENSPEMG00000017668Cpsf39998.387Peromyscus_maniculatus_bairdii
ENSPVAG00000005324CPSF37890.317ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSPVAG00000005324CPSF39797.444ENSPCIG00000009823CPSF39897.546Phascolarctos_cinereus
ENSPVAG00000005324CPSF39985.022ENSPFOG00000015922cpsf39985.022Poecilia_formosa
ENSPVAG00000005324CPSF39987.941ENSPFOG00000010418-9887.941Poecilia_formosa
ENSPVAG00000005324CPSF39985.022ENSPLAG00000000882cpsf39985.022Poecilia_latipinna
ENSPVAG00000005324CPSF35980.988ENSPLAG00000021300-9980.988Poecilia_latipinna
ENSPVAG00000005324CPSF39985.169ENSPMEG00000018309cpsf39985.169Poecilia_mexicana
ENSPVAG00000005324CPSF39282.962ENSPREG00000014875cpsf39982.962Poecilia_reticulata
ENSPVAG00000005324CPSF39982.622ENSPREG00000004482CPSF39882.622Poecilia_reticulata
ENSPVAG00000005324CPSF39995.015ENSPPYG00000012666CPSF39995.015Pongo_abelii
ENSPVAG00000005324CPSF39564.055ENSPCAG00000015042CPSF310064.055Procavia_capensis
ENSPVAG00000005324CPSF38892.199ENSPCOG00000023016CPSF39892.199Propithecus_coquereli
ENSPVAG00000005324CPSF37991.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSPVAG00000005324CPSF39985.630ENSPNYG00000004405cpsf39985.630Pundamilia_nyererei
ENSPVAG00000005324CPSF39987.629ENSPNAG00000023060cpsf39887.629Pygocentrus_nattereri
ENSPVAG00000005324CPSF39998.974ENSRNOG00000052418Cpsf39998.974Rattus_norvegicus
ENSPVAG00000005324CPSF39993.548ENSRBIG00000041615CPSF39994.884Rhinopithecus_bieti
ENSPVAG00000005324CPSF39999.560ENSRROG00000033792CPSF39999.560Rhinopithecus_roxellana
ENSPVAG00000005324CPSF38443.683YLR277CYSH18443.683Saccharomyces_cerevisiae
ENSPVAG00000005324CPSF39993.169ENSSBOG00000027263CPSF39993.169Saimiri_boliviensis_boliviensis
ENSPVAG00000005324CPSF39997.654ENSSHAG00000007024CPSF39997.654Sarcophilus_harrisii
ENSPVAG00000005324CPSF39989.589ENSSFOG00015002108cpsf39989.589Scleropages_formosus
ENSPVAG00000005324CPSF39587.538ENSSMAG00000020534CPSF39687.538Scophthalmus_maximus
ENSPVAG00000005324CPSF39988.218ENSSDUG00000018498CPSF39888.218Seriola_dumerili
ENSPVAG00000005324CPSF39985.777ENSSDUG00000002828cpsf39685.777Seriola_dumerili
ENSPVAG00000005324CPSF39988.218ENSSLDG00000005234CPSF39888.218Seriola_lalandi_dorsalis
ENSPVAG00000005324CPSF39985.777ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSPVAG00000005324CPSF39981.232ENSSARG00000005186CPSF39981.232Sorex_araneus
ENSPVAG00000005324CPSF39792.526ENSSPUG00000015525CPSF39792.526Sphenodon_punctatus
ENSPVAG00000005324CPSF39987.923ENSSPAG00000002906CPSF39887.923Stegastes_partitus
ENSPVAG00000005324CPSF39985.588ENSSPAG00000018579cpsf39885.588Stegastes_partitus
ENSPVAG00000005324CPSF39999.413ENSSSCG00000020799CPSF39999.413Sus_scrofa
ENSPVAG00000005324CPSF39995.582ENSTGUG00000013016CPSF39995.582Taeniopygia_guttata
ENSPVAG00000005324CPSF39985.022ENSTRUG00000007030cpsf39785.022Takifugu_rubripes
ENSPVAG00000005324CPSF35973.529ENSTRUG00000013905CPSF39973.529Takifugu_rubripes
ENSPVAG00000005324CPSF38593.699ENSTBEG00000002707CPSF38493.699Tupaia_belangeri
ENSPVAG00000005324CPSF38798.370ENSTTRG00000000861CPSF38798.370Tursiops_truncatus
ENSPVAG00000005324CPSF39996.481ENSUAMG00000007535CPSF39896.481Ursus_americanus
ENSPVAG00000005324CPSF39499.535ENSUMAG00000003676CPSF39999.535Ursus_maritimus
ENSPVAG00000005324CPSF39395.899ENSVPAG00000008041CPSF310095.899Vicugna_pacos
ENSPVAG00000005324CPSF39999.560ENSVVUG00000002194CPSF39999.560Vulpes_vulpes
ENSPVAG00000005324CPSF39990.029ENSXETG00000008263cpsf39990.029Xenopus_tropicalis
ENSPVAG00000005324CPSF35479.839ENSXCOG00000000957-8779.839Xiphophorus_couchianus
ENSPVAG00000005324CPSF39985.316ENSXCOG00000019695cpsf39985.316Xiphophorus_couchianus
ENSPVAG00000005324CPSF39988.235ENSXMAG00000027291CPSF39888.235Xiphophorus_maculatus
ENSPVAG00000005324CPSF39985.022ENSXMAG00000009784cpsf39985.022Xiphophorus_maculatus

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