EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000007531 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 14284 bases
Position: chrGeneScaffold_8:158750-173033
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000007108	zf-CCCH	PF00642.24	1e-19	1	2
ENSPVAP00000007108	zf-CCCH	PF00642.24	1e-19	2	2
ENSPVAP00000007108	zf-CCHC	PF00098.23	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000007531	CPSF4-201	810	-	ENSPVAP00000007108	269 (aa)	-	UPI00018B2A6F

Gene Model

Click here to download ENSPVAG00000007531's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000007531's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000007531	CPSF4	100	92.565	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPVAG00000007531	CPSF4	67	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSPVAG00000007531	CPSF4	100	93.309	ENSAMEG00000006252	CPSF4	100	93.309	Ailuropoda_melanoleuca
ENSPVAG00000007531	CPSF4	100	74.349	ENSACIG00000009248	cpsf4	100	72.491	Amphilophus_citrinellus
ENSPVAG00000007531	CPSF4	100	80.000	ENSAOCG00000019616	cpsf4	100	80.000	Amphiprion_ocellaris
ENSPVAG00000007531	CPSF4	100	80.000	ENSAPEG00000011679	cpsf4	100	80.000	Amphiprion_percula
ENSPVAG00000007531	CPSF4	100	79.412	ENSATEG00000007010	cpsf4	100	79.412	Anabas_testudineus
ENSPVAG00000007531	CPSF4	100	86.989	ENSACAG00000012941	CPSF4	89	86.989	Anolis_carolinensis
ENSPVAG00000007531	CPSF4	100	92.565	ENSANAG00000021360	CPSF4	100	92.565	Aotus_nancymaae
ENSPVAG00000007531	CPSF4	100	78.519	ENSACLG00000010374	cpsf4	100	78.519	Astatotilapia_calliptera
ENSPVAG00000007531	CPSF4	100	79.336	ENSAMXG00000031647	cpsf4	100	80.074	Astyanax_mexicanus
ENSPVAG00000007531	CPSF4	100	82.900	ENSBTAG00000002090	CPSF4	100	82.900	Bos_taurus
ENSPVAG00000007531	CPSF4	100	92.565	ENSCJAG00000015826	CPSF4	100	92.565	Callithrix_jacchus
ENSPVAG00000007531	CPSF4	100	92.937	ENSCAFG00000015036	CPSF4	100	92.937	Canis_familiaris
ENSPVAG00000007531	CPSF4	100	92.937	ENSCAFG00020014462	CPSF4	100	92.937	Canis_lupus_dingo
ENSPVAG00000007531	CPSF4	100	92.565	ENSCHIG00000014313	CPSF4	100	92.565	Capra_hircus
ENSPVAG00000007531	CPSF4	100	83.271	ENSTSYG00000005712	-	100	83.271	Carlito_syrichta
ENSPVAG00000007531	CPSF4	89	75.934	ENSTSYG00000008195	-	99	72.800	Carlito_syrichta
ENSPVAG00000007531	CPSF4	100	75.926	ENSTSYG00000014604	-	100	72.963	Carlito_syrichta
ENSPVAG00000007531	CPSF4	81	100.000	ENSCAPG00000013881	CPSF4	86	100.000	Cavia_aperea
ENSPVAG00000007531	CPSF4	100	84.015	ENSCPOG00000001783	CPSF4	100	84.015	Cavia_porcellus
ENSPVAG00000007531	CPSF4	100	92.565	ENSCCAG00000028291	CPSF4	100	92.565	Cebus_capucinus
ENSPVAG00000007531	CPSF4	100	92.565	ENSCATG00000038440	CPSF4	100	92.565	Cercocebus_atys
ENSPVAG00000007531	CPSF4	100	92.937	ENSCLAG00000007050	CPSF4	100	92.937	Chinchilla_lanigera
ENSPVAG00000007531	CPSF4	100	92.565	ENSCSAG00000017795	CPSF4	100	92.565	Chlorocebus_sabaeus
ENSPVAG00000007531	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSPVAG00000007531	CPSF4	61	73.333	ENSCPBG00000010269	-	99	73.333	Chrysemys_picta_bellii
ENSPVAG00000007531	CPSF4	97	52.107	ENSCING00000021080	-	97	52.107	Ciona_intestinalis
ENSPVAG00000007531	CPSF4	96	49.823	ENSCSAVG00000011469	-	97	49.466	Ciona_savignyi
ENSPVAG00000007531	CPSF4	100	92.565	ENSCANG00000019384	CPSF4	100	92.565	Colobus_angolensis_palliatus
ENSPVAG00000007531	CPSF4	100	84.015	ENSCGRG00001024184	Cpsf4	100	84.015	Cricetulus_griseus_chok1gshd
ENSPVAG00000007531	CPSF4	100	93.309	ENSCGRG00000013892	Cpsf4	100	93.309	Cricetulus_griseus_crigri
ENSPVAG00000007531	CPSF4	100	78.889	ENSCSEG00000019055	cpsf4	100	78.889	Cynoglossus_semilaevis
ENSPVAG00000007531	CPSF4	100	78.519	ENSCVAG00000016528	cpsf4	100	78.519	Cyprinodon_variegatus
ENSPVAG00000007531	CPSF4	100	80.074	ENSDARG00000020217	cpsf4	100	80.074	Danio_rerio
ENSPVAG00000007531	CPSF4	100	92.937	ENSDNOG00000006344	CPSF4	100	92.937	Dasypus_novemcinctus
ENSPVAG00000007531	CPSF4	81	99.539	ENSDORG00000000742	Cpsf4	100	99.539	Dipodomys_ordii
ENSPVAG00000007531	CPSF4	100	51.020	FBgn0015621	Clp	99	50.685	Drosophila_melanogaster
ENSPVAG00000007531	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSPVAG00000007531	CPSF4	99	60.300	ENSEBUG00000012552	cpsf4	98	60.300	Eptatretus_burgeri
ENSPVAG00000007531	CPSF4	100	84.015	ENSEASG00005002487	CPSF4	100	84.015	Equus_asinus_asinus
ENSPVAG00000007531	CPSF4	100	93.309	ENSECAG00000007525	CPSF4	100	93.309	Equus_caballus
ENSPVAG00000007531	CPSF4	57	100.000	ENSEEUG00000002158	CPSF4	65	100.000	Erinaceus_europaeus
ENSPVAG00000007531	CPSF4	100	77.372	ENSELUG00000011481	cpsf4	100	75.182	Esox_lucius
ENSPVAG00000007531	CPSF4	100	93.309	ENSFCAG00000015070	CPSF4	100	93.309	Felis_catus
ENSPVAG00000007531	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSPVAG00000007531	CPSF4	100	79.182	ENSFALG00000013799	CPSF4	100	77.695	Ficedula_albicollis
ENSPVAG00000007531	CPSF4	90	91.770	ENSFDAG00000014092	CPSF4	100	91.770	Fukomys_damarensis
ENSPVAG00000007531	CPSF4	100	78.519	ENSFHEG00000010880	cpsf4	100	78.519	Fundulus_heteroclitus
ENSPVAG00000007531	CPSF4	100	71.956	ENSGMOG00000002330	cpsf4	100	70.480	Gadus_morhua
ENSPVAG00000007531	CPSF4	100	79.182	ENSGALG00000004714	CPSF4	100	78.067	Gallus_gallus
ENSPVAG00000007531	CPSF4	68	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSPVAG00000007531	CPSF4	100	78.148	ENSGAFG00000010580	cpsf4	100	78.148	Gambusia_affinis
ENSPVAG00000007531	CPSF4	100	72.325	ENSGACG00000007792	cpsf4	100	71.218	Gasterosteus_aculeatus
ENSPVAG00000007531	CPSF4	68	69.780	ENSGAGG00000020579	-	92	73.333	Gopherus_agassizii
ENSPVAG00000007531	CPSF4	100	89.219	ENSGAGG00000021835	CPSF4	100	89.219	Gopherus_agassizii
ENSPVAG00000007531	CPSF4	100	92.565	ENSGGOG00000015131	CPSF4	100	92.565	Gorilla_gorilla
ENSPVAG00000007531	CPSF4	100	78.519	ENSHBUG00000013699	cpsf4	100	78.519	Haplochromis_burtoni
ENSPVAG00000007531	CPSF4	100	91.513	ENSHGLG00000017150	CPSF4	100	91.513	Heterocephalus_glaber_female
ENSPVAG00000007531	CPSF4	81	96.804	ENSHGLG00100009215	-	94	96.804	Heterocephalus_glaber_male
ENSPVAG00000007531	CPSF4	78	54.545	ENSHGLG00100017302	-	100	47.212	Heterocephalus_glaber_male
ENSPVAG00000007531	CPSF4	100	75.926	ENSHCOG00000004397	cpsf4	100	73.333	Hippocampus_comes
ENSPVAG00000007531	CPSF4	100	78.967	ENSIPUG00000017147	cpsf4	100	80.147	Ictalurus_punctatus
ENSPVAG00000007531	CPSF4	100	93.309	ENSSTOG00000001688	CPSF4	100	93.309	Ictidomys_tridecemlineatus
ENSPVAG00000007531	CPSF4	100	92.937	ENSJJAG00000019426	Cpsf4	100	92.937	Jaculus_jaculus
ENSPVAG00000007531	CPSF4	100	77.778	ENSKMAG00000015642	cpsf4	100	77.778	Kryptolebias_marmoratus
ENSPVAG00000007531	CPSF4	100	56.667	ENSLACG00000018470	-	100	56.667	Latimeria_chalumnae
ENSPVAG00000007531	CPSF4	100	82.593	ENSLACG00000010938	CPSF4	100	82.593	Latimeria_chalumnae
ENSPVAG00000007531	CPSF4	100	83.271	ENSLOCG00000004814	cpsf4	100	83.271	Lepisosteus_oculatus
ENSPVAG00000007531	CPSF4	100	92.937	ENSLAFG00000000159	CPSF4	100	92.937	Loxodonta_africana
ENSPVAG00000007531	CPSF4	100	92.565	ENSMFAG00000001462	CPSF4	100	92.565	Macaca_fascicularis
ENSPVAG00000007531	CPSF4	100	92.565	ENSMMUG00000019191	CPSF4	100	92.565	Macaca_mulatta
ENSPVAG00000007531	CPSF4	100	92.565	ENSMNEG00000032306	CPSF4	100	92.565	Macaca_nemestrina
ENSPVAG00000007531	CPSF4	100	92.565	ENSMLEG00000034721	CPSF4	100	92.565	Mandrillus_leucophaeus
ENSPVAG00000007531	CPSF4	100	78.889	ENSMAMG00000006244	cpsf4	100	78.388	Mastacembelus_armatus
ENSPVAG00000007531	CPSF4	100	78.519	ENSMZEG00005007515	cpsf4	100	78.519	Maylandia_zebra
ENSPVAG00000007531	CPSF4	81	83.410	ENSMGAG00000004235	CPSF4	91	82.028	Meleagris_gallopavo
ENSPVAG00000007531	CPSF4	100	93.309	ENSMAUG00000021253	Cpsf4	100	93.309	Mesocricetus_auratus
ENSPVAG00000007531	CPSF4	100	92.565	ENSMICG00000017429	CPSF4	100	92.565	Microcebus_murinus
ENSPVAG00000007531	CPSF4	100	93.309	ENSMOCG00000014901	Cpsf4	100	93.309	Microtus_ochrogaster
ENSPVAG00000007531	CPSF4	100	78.519	ENSMMOG00000001813	cpsf4	95	84.848	Mola_mola
ENSPVAG00000007531	CPSF4	100	90.335	ENSMODG00000001367	CPSF4	100	90.335	Monodelphis_domestica
ENSPVAG00000007531	CPSF4	100	77.778	ENSMALG00000012611	cpsf4	100	77.778	Monopterus_albus
ENSPVAG00000007531	CPSF4	100	93.309	MGP_CAROLIEiJ_G0028012	Cpsf4	100	93.309	Mus_caroli
ENSPVAG00000007531	CPSF4	100	93.309	ENSMUSG00000029625	Cpsf4	100	93.309	Mus_musculus
ENSPVAG00000007531	CPSF4	100	93.309	MGP_PahariEiJ_G0024581	Cpsf4	100	93.309	Mus_pahari
ENSPVAG00000007531	CPSF4	100	92.937	MGP_SPRETEiJ_G0029013	Cpsf4	100	92.937	Mus_spretus
ENSPVAG00000007531	CPSF4	100	93.309	ENSMPUG00000016508	CPSF4	100	93.309	Mustela_putorius_furo
ENSPVAG00000007531	CPSF4	81	87.558	ENSMLUG00000010980	CPSF4	91	87.558	Myotis_lucifugus
ENSPVAG00000007531	CPSF4	100	92.937	ENSNGAG00000001567	Cpsf4	100	92.937	Nannospalax_galili
ENSPVAG00000007531	CPSF4	91	77.642	ENSNBRG00000003943	cpsf4	98	77.642	Neolamprologus_brichardi
ENSPVAG00000007531	CPSF4	100	89.591	ENSNLEG00000011074	CPSF4	100	89.591	Nomascus_leucogenys
ENSPVAG00000007531	CPSF4	100	90.335	ENSMEUG00000006955	CPSF4	100	90.335	Notamacropus_eugenii
ENSPVAG00000007531	CPSF4	100	92.565	ENSOPRG00000013663	CPSF4	100	92.565	Ochotona_princeps
ENSPVAG00000007531	CPSF4	99	74.717	ENSODEG00000018283	-	91	72.453	Octodon_degus
ENSPVAG00000007531	CPSF4	100	93.309	ENSODEG00000011181	-	100	93.309	Octodon_degus
ENSPVAG00000007531	CPSF4	100	69.597	ENSODEG00000009779	-	100	69.597	Octodon_degus
ENSPVAG00000007531	CPSF4	100	78.519	ENSONIG00000008495	cpsf4	100	78.519	Oreochromis_niloticus
ENSPVAG00000007531	CPSF4	100	54.152	ENSOANG00000009568	-	100	51.625	Ornithorhynchus_anatinus
ENSPVAG00000007531	CPSF4	81	95.392	ENSOANG00000007729	CPSF4	92	95.392	Ornithorhynchus_anatinus
ENSPVAG00000007531	CPSF4	100	92.565	ENSOCUG00000002437	CPSF4	70	92.565	Oryctolagus_cuniculus
ENSPVAG00000007531	CPSF4	100	78.439	ENSORLG00000022798	cpsf4	100	78.439	Oryzias_latipes
ENSPVAG00000007531	CPSF4	100	78.439	ENSORLG00020008548	cpsf4	100	78.439	Oryzias_latipes_hni
ENSPVAG00000007531	CPSF4	100	78.067	ENSORLG00015019575	cpsf4	100	78.067	Oryzias_latipes_hsok
ENSPVAG00000007531	CPSF4	100	76.952	ENSOMEG00000005176	cpsf4	100	76.952	Oryzias_melastigma
ENSPVAG00000007531	CPSF4	100	92.937	ENSOGAG00000010884	CPSF4	100	92.937	Otolemur_garnettii
ENSPVAG00000007531	CPSF4	100	81.685	ENSOARG00000018668	CPSF4	100	80.952	Ovis_aries
ENSPVAG00000007531	CPSF4	100	92.193	ENSPPAG00000043355	CPSF4	100	92.193	Pan_paniscus
ENSPVAG00000007531	CPSF4	100	93.309	ENSPPRG00000003134	CPSF4	100	93.309	Panthera_pardus
ENSPVAG00000007531	CPSF4	90	92.149	ENSPTIG00000005604	CPSF4	90	92.149	Panthera_tigris_altaica
ENSPVAG00000007531	CPSF4	100	92.193	ENSPTRG00000019453	CPSF4	100	92.193	Pan_troglodytes
ENSPVAG00000007531	CPSF4	100	92.565	ENSPANG00000023123	CPSF4	100	92.565	Papio_anubis
ENSPVAG00000007531	CPSF4	100	78.102	ENSPKIG00000014278	cpsf4	100	78.102	Paramormyrops_kingsleyae
ENSPVAG00000007531	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSPVAG00000007531	CPSF4	80	58.986	ENSPSIG00000018198	-	99	57.870	Pelodiscus_sinensis
ENSPVAG00000007531	CPSF4	100	72.119	ENSPMGG00000017735	cpsf4	100	71.004	Periophthalmus_magnuspinnatus
ENSPVAG00000007531	CPSF4	100	93.309	ENSPEMG00000004508	Cpsf4	100	93.309	Peromyscus_maniculatus_bairdii
ENSPVAG00000007531	CPSF4	100	90.335	ENSPCIG00000024776	CPSF4	100	90.335	Phascolarctos_cinereus
ENSPVAG00000007531	CPSF4	100	78.148	ENSPFOG00000014912	cpsf4	100	78.148	Poecilia_formosa
ENSPVAG00000007531	CPSF4	100	70.632	ENSPLAG00000009599	cpsf4	100	70.632	Poecilia_latipinna
ENSPVAG00000007531	CPSF4	100	78.148	ENSPMEG00000009790	cpsf4	100	78.148	Poecilia_mexicana
ENSPVAG00000007531	CPSF4	100	77.407	ENSPREG00000018166	cpsf4	100	74.444	Poecilia_reticulata
ENSPVAG00000007531	CPSF4	81	98.157	ENSPPYG00000017378	CPSF4	93	98.157	Pongo_abelii
ENSPVAG00000007531	CPSF4	100	92.565	ENSPCAG00000001892	CPSF4	100	92.565	Procavia_capensis
ENSPVAG00000007531	CPSF4	100	92.937	ENSPCOG00000012771	CPSF4	100	92.937	Propithecus_coquereli
ENSPVAG00000007531	CPSF4	100	78.519	ENSPNYG00000018559	cpsf4	100	78.519	Pundamilia_nyererei
ENSPVAG00000007531	CPSF4	100	80.812	ENSPNAG00000003736	cpsf4	100	81.550	Pygocentrus_nattereri
ENSPVAG00000007531	CPSF4	100	83.643	ENSRNOG00000000985	Cpsf4	100	83.643	Rattus_norvegicus
ENSPVAG00000007531	CPSF4	81	99.078	ENSRBIG00000033886	CPSF4	93	99.078	Rhinopithecus_bieti
ENSPVAG00000007531	CPSF4	100	83.271	ENSRROG00000040431	CPSF4	100	83.271	Rhinopithecus_roxellana
ENSPVAG00000007531	CPSF4	100	92.565	ENSSBOG00000020493	CPSF4	100	92.565	Saimiri_boliviensis_boliviensis
ENSPVAG00000007531	CPSF4	100	90.335	ENSSHAG00000011533	CPSF4	100	90.335	Sarcophilus_harrisii
ENSPVAG00000007531	CPSF4	100	79.348	ENSSFOG00015007883	cpsf4	100	80.072	Scleropages_formosus
ENSPVAG00000007531	CPSF4	100	73.978	ENSSMAG00000006374	cpsf4	100	72.491	Scophthalmus_maximus
ENSPVAG00000007531	CPSF4	100	78.519	ENSSDUG00000018887	cpsf4	100	78.519	Seriola_dumerili
ENSPVAG00000007531	CPSF4	100	78.519	ENSSLDG00000019078	cpsf4	100	78.519	Seriola_lalandi_dorsalis
ENSPVAG00000007531	CPSF4	81	99.539	ENSSARG00000012416	CPSF4	93	99.539	Sorex_araneus
ENSPVAG00000007531	CPSF4	96	53.101	ENSSPUG00000014803	-	97	53.876	Sphenodon_punctatus
ENSPVAG00000007531	CPSF4	100	87.361	ENSSPUG00000003549	CPSF4	100	87.361	Sphenodon_punctatus
ENSPVAG00000007531	CPSF4	100	74.721	ENSSPAG00000006174	cpsf4	100	71.747	Stegastes_partitus
ENSPVAG00000007531	CPSF4	100	83.643	ENSSSCG00000026896	CPSF4	100	83.643	Sus_scrofa
ENSPVAG00000007531	CPSF4	100	78.229	ENSTGUG00000007552	CPSF4	100	76.753	Taeniopygia_guttata
ENSPVAG00000007531	CPSF4	100	75.824	ENSTRUG00000024220	cpsf4	100	75.824	Takifugu_rubripes
ENSPVAG00000007531	CPSF4	100	74.815	ENSTNIG00000006265	cpsf4	100	76.296	Tetraodon_nigroviridis
ENSPVAG00000007531	CPSF4	81	88.940	ENSTBEG00000011406	CPSF4	93	88.940	Tupaia_belangeri
ENSPVAG00000007531	CPSF4	100	71.747	ENSTTRG00000003007	CPSF4	100	71.747	Tursiops_truncatus
ENSPVAG00000007531	CPSF4	92	82.186	ENSUAMG00000008051	CPSF4	85	82.186	Ursus_americanus
ENSPVAG00000007531	CPSF4	100	83.643	ENSUMAG00000009474	CPSF4	100	83.643	Ursus_maritimus
ENSPVAG00000007531	CPSF4	100	83.643	ENSVVUG00000008824	CPSF4	100	83.643	Vulpes_vulpes
ENSPVAG00000007531	CPSF4	99	56.343	ENSXETG00000004641	cpsf4l	99	56.343	Xenopus_tropicalis
ENSPVAG00000007531	CPSF4	100	82.079	ENSXETG00000009892	cpsf4	100	82.079	Xenopus_tropicalis
ENSPVAG00000007531	CPSF4	100	78.148	ENSXCOG00000016040	cpsf4	100	77.778	Xiphophorus_couchianus
ENSPVAG00000007531	CPSF4	100	78.148	ENSXMAG00000024670	cpsf4	100	78.148	Xiphophorus_maculatus