EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPVAG00000007575 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 26347 bases
Position: chrscaffold_3223:33486-59832
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000007149	TruB_N	PF01509.18	9.3e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000007573	TRUB1-201	789	-	ENSPVAP00000007149	263 (aa)	-	UPI00018B2657

Gene Model

Click here to download ENSPVAG00000007575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000007575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPVAG00000007575	TRUB1	58	33.758	ENSPVAG00000001224	TRUB2	52	33.758

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000007575	TRUB1	100	92.045	ENSG00000165832	TRUB1	76	92.045	Homo_sapiens
ENSPVAG00000007575	TRUB1	76	69.154	ENSAPOG00000020565	trub1	73	68.812	Acanthochromis_polyacanthus
ENSPVAG00000007575	TRUB1	95	94.821	ENSAMEG00000014931	TRUB1	75	94.318	Ailuropoda_melanoleuca
ENSPVAG00000007575	TRUB1	77	62.376	ENSACIG00000003060	trub1	67	62.376	Amphilophus_citrinellus
ENSPVAG00000007575	TRUB1	76	68.657	ENSAOCG00000017188	trub1	73	68.317	Amphiprion_ocellaris
ENSPVAG00000007575	TRUB1	77	68.317	ENSAPEG00000015209	trub1	73	68.317	Amphiprion_percula
ENSPVAG00000007575	TRUB1	76	69.652	ENSATEG00000023291	trub1	72	69.652	Anabas_testudineus
ENSPVAG00000007575	TRUB1	79	77.990	ENSAPLG00000006808	TRUB1	75	77.990	Anas_platyrhynchos
ENSPVAG00000007575	TRUB1	78	71.707	ENSACAG00000009282	TRUB1	74	71.707	Anolis_carolinensis
ENSPVAG00000007575	TRUB1	95	94.400	ENSANAG00000022870	TRUB1	75	93.208	Aotus_nancymaae
ENSPVAG00000007575	TRUB1	77	68.317	ENSACLG00000000823	trub1	73	68.317	Astatotilapia_calliptera
ENSPVAG00000007575	TRUB1	77	69.802	ENSAMXG00000015845	trub1	68	69.802	Astyanax_mexicanus
ENSPVAG00000007575	TRUB1	98	92.607	ENSBTAG00000012955	TRUB1	76	92.105	Bos_taurus
ENSPVAG00000007575	TRUB1	100	92.453	ENSCJAG00000047815	TRUB1	75	92.453	Callithrix_jacchus
ENSPVAG00000007575	TRUB1	100	93.939	ENSCAFG00000011688	TRUB1	75	93.939	Canis_familiaris
ENSPVAG00000007575	TRUB1	100	94.318	ENSCAFG00020013237	TRUB1	75	94.318	Canis_lupus_dingo
ENSPVAG00000007575	TRUB1	98	92.607	ENSCHIG00000020884	TRUB1	75	92.453	Capra_hircus
ENSPVAG00000007575	TRUB1	100	90.943	ENSTSYG00000000446	TRUB1	75	90.189	Carlito_syrichta
ENSPVAG00000007575	TRUB1	57	94.631	ENSCAPG00000017088	TRUB1	63	94.631	Cavia_aperea
ENSPVAG00000007575	TRUB1	93	84.016	ENSCPOG00000040236	-	100	84.016	Cavia_porcellus
ENSPVAG00000007575	TRUB1	94	80.162	ENSCPOG00000030129	-	86	78.543	Cavia_porcellus
ENSPVAG00000007575	TRUB1	95	94.024	ENSCCAG00000028842	TRUB1	75	92.075	Cebus_capucinus
ENSPVAG00000007575	TRUB1	100	93.182	ENSCATG00000033431	TRUB1	75	93.182	Cercocebus_atys
ENSPVAG00000007575	TRUB1	93	88.115	ENSCLAG00000008664	TRUB1	100	88.115	Chinchilla_lanigera
ENSPVAG00000007575	TRUB1	100	93.182	ENSCSAG00000004891	TRUB1	75	93.182	Chlorocebus_sabaeus
ENSPVAG00000007575	TRUB1	100	81.061	ENSCHOG00000011931	TRUB1	78	81.061	Choloepus_hoffmanni
ENSPVAG00000007575	TRUB1	77	81.773	ENSCPBG00000003051	TRUB1	70	81.773	Chrysemys_picta_bellii
ENSPVAG00000007575	TRUB1	100	93.182	ENSCANG00000029445	TRUB1	75	93.182	Colobus_angolensis_palliatus
ENSPVAG00000007575	TRUB1	64	91.716	ENSCGRG00001016772	-	62	79.245	Cricetulus_griseus_chok1gshd
ENSPVAG00000007575	TRUB1	74	80.513	ENSCGRG00001010322	-	55	80.769	Cricetulus_griseus_chok1gshd
ENSPVAG00000007575	TRUB1	74	92.821	ENSCGRG00000010806	Trub1	65	91.509	Cricetulus_griseus_crigri
ENSPVAG00000007575	TRUB1	81	64.789	ENSCSEG00000011261	trub1	65	67.327	Cynoglossus_semilaevis
ENSPVAG00000007575	TRUB1	76	69.652	ENSCVAG00000008791	trub1	62	69.652	Cyprinodon_variegatus
ENSPVAG00000007575	TRUB1	77	69.307	ENSDARG00000053805	trub1	76	70.588	Danio_rerio
ENSPVAG00000007575	TRUB1	97	86.614	ENSDNOG00000001069	TRUB1	76	86.415	Dasypus_novemcinctus
ENSPVAG00000007575	TRUB1	100	87.879	ENSDORG00000010431	Trub1	75	85.606	Dipodomys_ordii
ENSPVAG00000007575	TRUB1	75	78.431	ENSETEG00000009183	TRUB1	57	77.451	Echinops_telfairi
ENSPVAG00000007575	TRUB1	95	94.422	ENSEASG00005014739	TRUB1	75	93.939	Equus_asinus_asinus
ENSPVAG00000007575	TRUB1	95	94.422	ENSECAG00000007177	TRUB1	75	93.939	Equus_caballus
ENSPVAG00000007575	TRUB1	100	73.260	ENSEEUG00000013993	TRUB1	76	73.993	Erinaceus_europaeus
ENSPVAG00000007575	TRUB1	77	72.772	ENSELUG00000000502	trub1	71	72.772	Esox_lucius
ENSPVAG00000007575	TRUB1	95	94.821	ENSFCAG00000031927	TRUB1	75	94.677	Felis_catus
ENSPVAG00000007575	TRUB1	65	79.651	ENSFALG00000002232	TRUB1	66	79.651	Ficedula_albicollis
ENSPVAG00000007575	TRUB1	93	87.295	ENSFDAG00000008140	TRUB1	100	87.295	Fukomys_damarensis
ENSPVAG00000007575	TRUB1	76	68.657	ENSFHEG00000004016	trub1	69	68.657	Fundulus_heteroclitus
ENSPVAG00000007575	TRUB1	77	77.833	ENSGALG00000009091	TRUB1	80	76.630	Gallus_gallus
ENSPVAG00000007575	TRUB1	81	65.888	ENSGAFG00000009193	trub1	74	66.038	Gambusia_affinis
ENSPVAG00000007575	TRUB1	57	69.536	ENSGACG00000015387	trub1	74	69.536	Gasterosteus_aculeatus
ENSPVAG00000007575	TRUB1	86	76.889	ENSGAGG00000009758	TRUB1	60	79.717	Gopherus_agassizii
ENSPVAG00000007575	TRUB1	100	92.424	ENSGGOG00000004583	TRUB1	76	92.424	Gorilla_gorilla
ENSPVAG00000007575	TRUB1	77	68.317	ENSHBUG00000016787	trub1	73	68.317	Haplochromis_burtoni
ENSPVAG00000007575	TRUB1	100	87.833	ENSHGLG00000015314	TRUB1	75	87.833	Heterocephalus_glaber_female
ENSPVAG00000007575	TRUB1	93	85.656	ENSHGLG00100009183	TRUB1	100	85.656	Heterocephalus_glaber_male
ENSPVAG00000007575	TRUB1	77	69.307	ENSHCOG00000017877	trub1	73	69.307	Hippocampus_comes
ENSPVAG00000007575	TRUB1	77	71.782	ENSIPUG00000017559	trub1	71	71.782	Ictalurus_punctatus
ENSPVAG00000007575	TRUB1	87	93.886	ENSSTOG00000003641	TRUB1	75	86.742	Ictidomys_tridecemlineatus
ENSPVAG00000007575	TRUB1	81	95.283	ENSJJAG00000011800	Trub1	62	95.283	Jaculus_jaculus
ENSPVAG00000007575	TRUB1	77	68.812	ENSKMAG00000006232	trub1	73	68.812	Kryptolebias_marmoratus
ENSPVAG00000007575	TRUB1	77	69.802	ENSLBEG00000026722	trub1	71	69.802	Labrus_bergylta
ENSPVAG00000007575	TRUB1	79	78.365	ENSLACG00000014885	TRUB1	69	78.365	Latimeria_chalumnae
ENSPVAG00000007575	TRUB1	78	73.301	ENSLOCG00000012979	trub1	70	73.301	Lepisosteus_oculatus
ENSPVAG00000007575	TRUB1	100	84.151	ENSLAFG00000015452	TRUB1	73	84.151	Loxodonta_africana
ENSPVAG00000007575	TRUB1	100	93.182	ENSMFAG00000031767	TRUB1	75	93.182	Macaca_fascicularis
ENSPVAG00000007575	TRUB1	100	93.182	ENSMMUG00000001902	TRUB1	75	93.182	Macaca_mulatta
ENSPVAG00000007575	TRUB1	100	87.500	ENSMNEG00000044646	TRUB1	75	87.500	Macaca_nemestrina
ENSPVAG00000007575	TRUB1	100	92.803	ENSMLEG00000042655	TRUB1	75	92.803	Mandrillus_leucophaeus
ENSPVAG00000007575	TRUB1	77	68.317	ENSMZEG00005024095	trub1	73	68.317	Maylandia_zebra
ENSPVAG00000007575	TRUB1	77	77.833	ENSMGAG00000011135	TRUB1	70	77.833	Meleagris_gallopavo
ENSPVAG00000007575	TRUB1	74	89.744	ENSMAUG00000011101	Trub1	62	88.679	Mesocricetus_auratus
ENSPVAG00000007575	TRUB1	100	93.536	ENSMICG00000016324	TRUB1	75	93.536	Microcebus_murinus
ENSPVAG00000007575	TRUB1	90	85.124	ENSMOCG00000017759	Trub1	64	91.943	Microtus_ochrogaster
ENSPVAG00000007575	TRUB1	76	90.547	ENSMODG00000009676	TRUB1	58	87.678	Monodelphis_domestica
ENSPVAG00000007575	TRUB1	100	84.791	MGP_CAROLIEiJ_G0023100	Trub1	80	90.355	Mus_caroli
ENSPVAG00000007575	TRUB1	100	83.650	ENSMUSG00000025086	Trub1	80	89.340	Mus_musculus
ENSPVAG00000007575	TRUB1	100	84.791	MGP_PahariEiJ_G0014588	Trub1	63	91.981	Mus_pahari
ENSPVAG00000007575	TRUB1	100	83.650	MGP_SPRETEiJ_G0024021	Trub1	80	89.340	Mus_spretus
ENSPVAG00000007575	TRUB1	95	96.414	ENSMPUG00000003556	TRUB1	75	95.833	Mustela_putorius_furo
ENSPVAG00000007575	TRUB1	95	88.755	ENSMLUG00000017686	TRUB1	75	86.038	Myotis_lucifugus
ENSPVAG00000007575	TRUB1	100	86.312	ENSNGAG00000018682	Trub1	75	86.312	Nannospalax_galili
ENSPVAG00000007575	TRUB1	77	68.317	ENSNBRG00000023393	trub1	72	68.317	Neolamprologus_brichardi
ENSPVAG00000007575	TRUB1	95	92.829	ENSNLEG00000016345	TRUB1	76	92.045	Nomascus_leucogenys
ENSPVAG00000007575	TRUB1	76	90.547	ENSMEUG00000006603	TRUB1	78	87.678	Notamacropus_eugenii
ENSPVAG00000007575	TRUB1	82	87.963	ENSOPRG00000009371	TRUB1	60	89.904	Ochotona_princeps
ENSPVAG00000007575	TRUB1	100	84.411	ENSODEG00000010854	TRUB1	75	84.411	Octodon_degus
ENSPVAG00000007575	TRUB1	77	67.822	ENSONIG00000007249	trub1	73	67.822	Oreochromis_niloticus
ENSPVAG00000007575	TRUB1	78	82.439	ENSOANG00000001556	TRUB1	69	81.340	Ornithorhynchus_anatinus
ENSPVAG00000007575	TRUB1	100	84.030	ENSOCUG00000009456	TRUB1	61	91.038	Oryctolagus_cuniculus
ENSPVAG00000007575	TRUB1	76	70.149	ENSORLG00000029719	trub1	72	70.149	Oryzias_latipes
ENSPVAG00000007575	TRUB1	76	69.652	ENSORLG00020016767	trub1	71	69.652	Oryzias_latipes_hni
ENSPVAG00000007575	TRUB1	76	69.652	ENSORLG00015014728	trub1	72	69.652	Oryzias_latipes_hsok
ENSPVAG00000007575	TRUB1	83	67.431	ENSOMEG00000014556	trub1	71	70.149	Oryzias_melastigma
ENSPVAG00000007575	TRUB1	100	92.803	ENSOGAG00000015895	TRUB1	75	92.803	Otolemur_garnettii
ENSPVAG00000007575	TRUB1	80	94.419	ENSOARG00000015591	TRUB1	75	88.104	Ovis_aries
ENSPVAG00000007575	TRUB1	100	92.424	ENSPPAG00000043645	TRUB1	76	92.424	Pan_paniscus
ENSPVAG00000007575	TRUB1	95	94.024	ENSPPRG00000007096	TRUB1	75	93.916	Panthera_pardus
ENSPVAG00000007575	TRUB1	95	94.422	ENSPTIG00000006378	TRUB1	75	94.297	Panthera_tigris_altaica
ENSPVAG00000007575	TRUB1	100	92.424	ENSPTRG00000002964	TRUB1	76	92.424	Pan_troglodytes
ENSPVAG00000007575	TRUB1	100	93.561	ENSPANG00000020712	TRUB1	75	93.561	Papio_anubis
ENSPVAG00000007575	TRUB1	77	80.296	ENSPSIG00000012877	TRUB1	70	80.296	Pelodiscus_sinensis
ENSPVAG00000007575	TRUB1	77	66.337	ENSPMGG00000000075	trub1	73	66.337	Periophthalmus_magnuspinnatus
ENSPVAG00000007575	TRUB1	82	89.767	ENSPEMG00000011156	Trub1	62	89.623	Peromyscus_maniculatus_bairdii
ENSPVAG00000007575	TRUB1	76	90.547	ENSPCIG00000009729	TRUB1	56	88.889	Phascolarctos_cinereus
ENSPVAG00000007575	TRUB1	77	68.812	ENSPFOG00000009950	trub1	74	68.812	Poecilia_formosa
ENSPVAG00000007575	TRUB1	77	68.812	ENSPLAG00000013855	trub1	71	68.812	Poecilia_latipinna
ENSPVAG00000007575	TRUB1	77	68.812	ENSPMEG00000009064	trub1	73	68.812	Poecilia_mexicana
ENSPVAG00000007575	TRUB1	77	69.307	ENSPREG00000003343	trub1	73	69.307	Poecilia_reticulata
ENSPVAG00000007575	TRUB1	95	92.430	ENSPPYG00000002676	TRUB1	76	91.667	Pongo_abelii
ENSPVAG00000007575	TRUB1	93	83.468	ENSPCAG00000008427	TRUB1	70	83.065	Procavia_capensis
ENSPVAG00000007575	TRUB1	100	85.932	ENSPCOG00000024360	TRUB1	74	85.932	Propithecus_coquereli
ENSPVAG00000007575	TRUB1	77	68.317	ENSPNYG00000018614	trub1	73	68.317	Pundamilia_nyererei
ENSPVAG00000007575	TRUB1	76	59.701	ENSPNAG00000006881	trub1	62	59.701	Pygocentrus_nattereri
ENSPVAG00000007575	TRUB1	100	84.791	ENSRNOG00000017321	Trub1	62	91.509	Rattus_norvegicus
ENSPVAG00000007575	TRUB1	100	79.924	ENSRBIG00000033423	TRUB1	73	79.924	Rhinopithecus_bieti
ENSPVAG00000007575	TRUB1	100	92.803	ENSRROG00000033902	TRUB1	75	92.803	Rhinopithecus_roxellana
ENSPVAG00000007575	TRUB1	95	94.821	ENSSBOG00000024237	TRUB1	75	92.830	Saimiri_boliviensis_boliviensis
ENSPVAG00000007575	TRUB1	64	89.941	ENSSHAG00000009346	TRUB1	57	89.941	Sarcophilus_harrisii
ENSPVAG00000007575	TRUB1	77	69.307	ENSSFOG00015022124	trub1	69	69.307	Scleropages_formosus
ENSPVAG00000007575	TRUB1	77	69.802	ENSSMAG00000001020	trub1	72	69.802	Scophthalmus_maximus
ENSPVAG00000007575	TRUB1	75	70.408	ENSSDUG00000016414	trub1	73	70.297	Seriola_dumerili
ENSPVAG00000007575	TRUB1	75	70.918	ENSSLDG00000015486	trub1	73	70.792	Seriola_lalandi_dorsalis
ENSPVAG00000007575	TRUB1	83	79.452	ENSSPUG00000001642	TRUB1	70	82.266	Sphenodon_punctatus
ENSPVAG00000007575	TRUB1	77	69.307	ENSSPAG00000001217	trub1	73	69.307	Stegastes_partitus
ENSPVAG00000007575	TRUB1	100	87.879	ENSSSCG00000010653	TRUB1	77	87.879	Sus_scrofa
ENSPVAG00000007575	TRUB1	76	78.109	ENSTGUG00000010971	TRUB1	72	77.833	Taeniopygia_guttata
ENSPVAG00000007575	TRUB1	64	77.381	ENSTBEG00000002880	TRUB1	66	77.381	Tupaia_belangeri
ENSPVAG00000007575	TRUB1	95	92.032	ENSTTRG00000005767	TRUB1	100	90.530	Tursiops_truncatus
ENSPVAG00000007575	TRUB1	95	96.016	ENSUAMG00000024876	TRUB1	75	95.455	Ursus_americanus
ENSPVAG00000007575	TRUB1	95	89.243	ENSUMAG00000002411	TRUB1	96	86.486	Ursus_maritimus
ENSPVAG00000007575	TRUB1	100	93.561	ENSVPAG00000005507	TRUB1	76	93.561	Vicugna_pacos
ENSPVAG00000007575	TRUB1	100	93.182	ENSVVUG00000010085	TRUB1	63	92.045	Vulpes_vulpes
ENSPVAG00000007575	TRUB1	77	70.936	ENSXETG00000023828	trub1	73	70.936	Xenopus_tropicalis
ENSPVAG00000007575	TRUB1	77	68.317	ENSXCOG00000017847	trub1	71	68.317	Xiphophorus_couchianus
ENSPVAG00000007575	TRUB1	77	68.317	ENSXMAG00000014701	trub1	73	68.317	Xiphophorus_maculatus