EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000011732 (Gene tree)
Gene ID: -
Gene Symbol: PRDM1
Alias: BLIMP1|PRDI-BF1
Full Name: PR/SET domain 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 18156 bases
Position: chrscaffold_163:133920-152075
Accession: 9346
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000011060	zf-C2H2	PF00096.26	4.3e-18	1	3
ENSPVAP00000011060	zf-C2H2	PF00096.26	4.3e-18	2	3
ENSPVAP00000011060	zf-C2H2	PF00096.26	4.3e-18	3	3
ENSPVAP00000011060	zf-met	PF12874.7	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000011732	PRDM1-201	2361	-	ENSPVAP00000011060	786 (aa)	-	UPI00018B43B2

Gene Model

Click here to download ENSPVAG00000011732's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000011732's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000011732	PRDM1	99	41.836	ENSAPOG00000014135	-	94	41.597	Acanthochromis_polyacanthus
ENSPVAG00000011732	PRDM1	96	42.787	ENSACIG00000009747	-	93	42.717	Amphilophus_citrinellus
ENSPVAG00000011732	PRDM1	58	66.667	ENSACIG00000014426	prdm1b	70	66.667	Amphilophus_citrinellus
ENSPVAG00000011732	PRDM1	80	40.061	ENSAOCG00000002230	prdm1b	95	39.426	Amphiprion_ocellaris
ENSPVAG00000011732	PRDM1	99	53.406	ENSATEG00000021017	prdm1a	100	53.791	Anabas_testudineus
ENSPVAG00000011732	PRDM1	60	64.789	ENSATEG00000006924	prdm1b	74	64.789	Anabas_testudineus
ENSPVAG00000011732	PRDM1	99	43.558	ENSATEG00000014034	-	96	43.313	Anabas_testudineus
ENSPVAG00000011732	PRDM1	82	40.303	ENSACLG00000005487	prdm1b	88	40.303	Astatotilapia_calliptera
ENSPVAG00000011732	PRDM1	99	53.528	ENSCSEG00000009707	prdm1a	99	53.511	Cynoglossus_semilaevis
ENSPVAG00000011732	PRDM1	99	53.742	ENSCVAG00000019081	prdm1a	99	53.511	Cyprinodon_variegatus
ENSPVAG00000011732	PRDM1	93	42.154	ENSCVAG00000016746	prdm1b	92	42.272	Cyprinodon_variegatus
ENSPVAG00000011732	PRDM1	80	39.816	ENSFHEG00000019848	prdm1b	90	39.816	Fundulus_heteroclitus
ENSPVAG00000011732	PRDM1	93	42.989	ENSGAFG00000013012	-	67	57.762	Gambusia_affinis
ENSPVAG00000011732	PRDM1	69	59.394	ENSGAFG00000016191	prdm1b	90	40.393	Gambusia_affinis
ENSPVAG00000011732	PRDM1	94	40.814	ENSGACG00000002716	prdm1b	100	41.613	Gasterosteus_aculeatus
ENSPVAG00000011732	PRDM1	81	40.512	ENSHBUG00000001475	prdm1b	94	39.759	Haplochromis_burtoni
ENSPVAG00000011732	PRDM1	57	66.197	ENSHCOG00000003617	prdm1b	67	66.197	Hippocampus_comes
ENSPVAG00000011732	PRDM1	92	40.242	ENSIPUG00000013740	prdm1b	94	41.319	Ictalurus_punctatus
ENSPVAG00000011732	PRDM1	59	68.919	ENSKMAG00000011218	prdm1b	73	68.919	Kryptolebias_marmoratus
ENSPVAG00000011732	PRDM1	99	51.377	ENSKMAG00000017597	prdm1a	97	51.555	Kryptolebias_marmoratus
ENSPVAG00000011732	PRDM1	99	42.893	ENSKMAG00000016247	-	94	42.857	Kryptolebias_marmoratus
ENSPVAG00000011732	PRDM1	94	40.287	ENSLBEG00000020955	prdm1b	67	59.884	Labrus_bergylta
ENSPVAG00000011732	PRDM1	94	47.237	ENSLOCG00000004978	prdm1b	95	47.098	Lepisosteus_oculatus
ENSPVAG00000011732	PRDM1	80	40.422	ENSMZEG00005026361	prdm1b	89	39.642	Maylandia_zebra
ENSPVAG00000011732	PRDM1	80	40.429	ENSMMOG00000013458	prdm1b	93	40.276	Mola_mola
ENSPVAG00000011732	PRDM1	99	42.497	ENSMALG00000000462	-	96	42.377	Monopterus_albus
ENSPVAG00000011732	PRDM1	75	53.824	ENSONIG00000014709	-	99	42.188	Oreochromis_niloticus
ENSPVAG00000011732	PRDM1	93	43.043	ENSONIG00000013583	prdm1b	100	43.043	Oreochromis_niloticus
ENSPVAG00000011732	PRDM1	58	64.179	ENSORLG00000010025	prdm1b	69	64.179	Oryzias_latipes
ENSPVAG00000011732	PRDM1	80	39.110	ENSORLG00015009022	prdm1b	91	38.450	Oryzias_latipes_hsok
ENSPVAG00000011732	PRDM1	50	60.360	ENSPKIG00000022335	prdm1b	78	53.488	Paramormyrops_kingsleyae
ENSPVAG00000011732	PRDM1	90	42.954	ENSPFOG00000003103	prdm1b	100	42.954	Poecilia_formosa
ENSPVAG00000011732	PRDM1	80	41.006	ENSPLAG00000018491	prdm1b	90	40.483	Poecilia_latipinna
ENSPVAG00000011732	PRDM1	80	41.159	ENSPMEG00000007869	prdm1b	90	40.979	Poecilia_mexicana
ENSPVAG00000011732	PRDM1	75	58.140	ENSPREG00000011327	prdm1b	74	66.667	Poecilia_reticulata
ENSPVAG00000011732	PRDM1	99	55.779	ENSPNAG00000028442	prdm1a	96	55.528	Pygocentrus_nattereri
ENSPVAG00000011732	PRDM1	58	55.676	ENSSFOG00015021896	prdm1b	66	55.676	Scleropages_formosus
ENSPVAG00000011732	PRDM1	69	58.721	ENSSMAG00000020467	prdm1b	69	70.000	Scophthalmus_maximus
ENSPVAG00000011732	PRDM1	81	39.426	ENSSDUG00000020610	prdm1b	70	66.197	Seriola_dumerili
ENSPVAG00000011732	PRDM1	94	41.276	ENSSLDG00000021973	prdm1b	74	60.465	Seriola_lalandi_dorsalis
ENSPVAG00000011732	PRDM1	56	64.789	ENSSPAG00000000803	prdm1b	76	64.789	Stegastes_partitus
ENSPVAG00000011732	PRDM1	99	42.193	ENSSPAG00000009830	-	95	42.074	Stegastes_partitus
ENSPVAG00000011732	PRDM1	77	51.858	ENSTNIG00000003926	prdm1a	91	52.558	Tetraodon_nigroviridis
ENSPVAG00000011732	PRDM1	93	42.933	ENSXCOG00000018920	prdm1b	94	42.933	Xiphophorus_couchianus
ENSPVAG00000011732	PRDM1	70	57.225	ENSXMAG00000016765	prdm1b	95	39.381	Xiphophorus_maculatus