EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPVAG00000012405 (Gene tree)
Gene ID: -
Gene Symbol: LSM2
Alias: C6orf28|G7b|YBL026W
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 4025 bases
Position: chrGeneScaffold_3921:181005-185029
Accession: 105305303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000011694	LSM	PF01423.22	3.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000012404	LSM2-201	288	-	ENSPVAP00000011694	95 (aa)	XP_011378133	UPI00000E839D

Gene Model

Click here to download ENSPVAG00000012405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000012405's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPVAG00000012405	LSM2	74	30.000	ENSPVAG00000008644	LSM10	55	30.000
ENSPVAG00000012405	LSM2	82	35.000	ENSPVAG00000015383	LSM4	70	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000012405	LSM2	100	100.000	ENSG00000204392	LSM2	100	100.000	Homo_sapiens
ENSPVAG00000012405	LSM2	100	98.947	ENSAPOG00000017967	si:ch73-14h10.2	100	98.947	Acanthochromis_polyacanthus
ENSPVAG00000012405	LSM2	99	100.000	ENSAMEG00000006483	LSM2	100	100.000	Ailuropoda_melanoleuca
ENSPVAG00000012405	LSM2	99	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
ENSPVAG00000012405	LSM2	99	98.936	ENSAOCG00000006949	si:ch73-14h10.2	78	98.936	Amphiprion_ocellaris
ENSPVAG00000012405	LSM2	99	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
ENSPVAG00000012405	LSM2	100	98.947	ENSATEG00000011376	si:ch73-14h10.2	100	98.947	Anabas_testudineus
ENSPVAG00000012405	LSM2	99	100.000	ENSACAG00000017281	LSM2	90	100.000	Anolis_carolinensis
ENSPVAG00000012405	LSM2	96	81.319	ENSANAG00000028033	-	96	81.319	Aotus_nancymaae
ENSPVAG00000012405	LSM2	100	100.000	ENSANAG00000028372	LSM2	100	100.000	Aotus_nancymaae
ENSPVAG00000012405	LSM2	100	98.947	ENSACLG00000024717	smx5	100	98.947	Astatotilapia_calliptera
ENSPVAG00000012405	LSM2	100	98.947	ENSAMXG00000036868	si:ch73-14h10.2	100	98.947	Astyanax_mexicanus
ENSPVAG00000012405	LSM2	100	100.000	ENSBTAG00000005634	LSM2	100	100.000	Bos_taurus
ENSPVAG00000012405	LSM2	99	84.043	WBGene00001808	gut-2	97	84.043	Caenorhabditis_elegans
ENSPVAG00000012405	LSM2	100	100.000	ENSCJAG00000040899	LSM2	100	100.000	Callithrix_jacchus
ENSPVAG00000012405	LSM2	75	98.592	ENSCAFG00020016978	-	88	98.592	Canis_lupus_dingo
ENSPVAG00000012405	LSM2	99	100.000	ENSCHIG00000016153	LSM2	100	100.000	Capra_hircus
ENSPVAG00000012405	LSM2	100	100.000	ENSTSYG00000034844	LSM2	100	100.000	Carlito_syrichta
ENSPVAG00000012405	LSM2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSPVAG00000012405	LSM2	76	100.000	ENSCAPG00000009970	LSM2	92	100.000	Cavia_aperea
ENSPVAG00000012405	LSM2	100	100.000	ENSCPOG00000021053	LSM2	100	100.000	Cavia_porcellus
ENSPVAG00000012405	LSM2	100	100.000	ENSCCAG00000024276	LSM2	100	100.000	Cebus_capucinus
ENSPVAG00000012405	LSM2	100	100.000	ENSCATG00000013737	LSM2	100	100.000	Cercocebus_atys
ENSPVAG00000012405	LSM2	100	100.000	ENSCLAG00000008081	LSM2	100	100.000	Chinchilla_lanigera
ENSPVAG00000012405	LSM2	100	100.000	ENSCSAG00000008800	LSM2	100	100.000	Chlorocebus_sabaeus
ENSPVAG00000012405	LSM2	100	100.000	ENSCHOG00000007702	LSM2	100	100.000	Choloepus_hoffmanni
ENSPVAG00000012405	LSM2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
ENSPVAG00000012405	LSM2	100	100.000	ENSCANG00000039576	LSM2	100	100.000	Colobus_angolensis_palliatus
ENSPVAG00000012405	LSM2	100	100.000	ENSCGRG00001013932	Lsm2	100	100.000	Cricetulus_griseus_chok1gshd
ENSPVAG00000012405	LSM2	76	100.000	ENSCGRG00000013311	Lsm2	62	100.000	Cricetulus_griseus_crigri
ENSPVAG00000012405	LSM2	100	98.947	ENSCSEG00000002911	si:ch73-14h10.2	100	98.947	Cynoglossus_semilaevis
ENSPVAG00000012405	LSM2	99	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
ENSPVAG00000012405	LSM2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSPVAG00000012405	LSM2	99	100.000	ENSDNOG00000002633	LSM2	100	100.000	Dasypus_novemcinctus
ENSPVAG00000012405	LSM2	100	100.000	ENSDORG00000026571	Lsm2	100	100.000	Dipodomys_ordii
ENSPVAG00000012405	LSM2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
ENSPVAG00000012405	LSM2	99	100.000	ENSEASG00005015670	LSM2	79	100.000	Equus_asinus_asinus
ENSPVAG00000012405	LSM2	99	100.000	ENSECAG00000018791	LSM2	79	100.000	Equus_caballus
ENSPVAG00000012405	LSM2	100	100.000	ENSELUG00000008241	smx5	100	100.000	Esox_lucius
ENSPVAG00000012405	LSM2	100	100.000	ENSFCAG00000045887	LSM2	100	100.000	Felis_catus
ENSPVAG00000012405	LSM2	100	100.000	ENSFDAG00000000390	LSM2	100	100.000	Fukomys_damarensis
ENSPVAG00000012405	LSM2	99	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSPVAG00000012405	LSM2	99	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSPVAG00000012405	LSM2	100	98.947	ENSGAFG00000017286	si:ch73-14h10.2	100	98.947	Gambusia_affinis
ENSPVAG00000012405	LSM2	100	98.947	ENSGACG00000003827	si:ch73-14h10.2	100	98.947	Gasterosteus_aculeatus
ENSPVAG00000012405	LSM2	100	100.000	ENSGAGG00000012458	LSM2	100	100.000	Gopherus_agassizii
ENSPVAG00000012405	LSM2	100	100.000	ENSGGOG00000011383	LSM2	100	100.000	Gorilla_gorilla
ENSPVAG00000012405	LSM2	100	100.000	ENSHGLG00000011299	LSM2	100	100.000	Heterocephalus_glaber_female
ENSPVAG00000012405	LSM2	100	100.000	ENSHGLG00100017194	LSM2	100	100.000	Heterocephalus_glaber_male
ENSPVAG00000012405	LSM2	100	98.947	ENSHCOG00000014057	si:ch73-14h10.2	100	98.947	Hippocampus_comes
ENSPVAG00000012405	LSM2	100	98.947	ENSIPUG00000010539	lsm2	100	98.947	Ictalurus_punctatus
ENSPVAG00000012405	LSM2	100	100.000	ENSSTOG00000013144	LSM2	100	100.000	Ictidomys_tridecemlineatus
ENSPVAG00000012405	LSM2	94	77.528	ENSJJAG00000019477	-	100	77.528	Jaculus_jaculus
ENSPVAG00000012405	LSM2	100	98.947	ENSKMAG00000014909	si:ch73-14h10.2	100	98.947	Kryptolebias_marmoratus
ENSPVAG00000012405	LSM2	99	97.872	ENSLBEG00000025781	si:ch73-14h10.2	98	97.872	Labrus_bergylta
ENSPVAG00000012405	LSM2	100	98.947	ENSLACG00000015064	LSM2	100	98.947	Latimeria_chalumnae
ENSPVAG00000012405	LSM2	100	98.947	ENSLOCG00000005228	si:ch73-14h10.2	100	98.947	Lepisosteus_oculatus
ENSPVAG00000012405	LSM2	99	100.000	ENSLAFG00000016139	LSM2	100	100.000	Loxodonta_africana
ENSPVAG00000012405	LSM2	100	100.000	ENSMFAG00000001016	LSM2	100	100.000	Macaca_fascicularis
ENSPVAG00000012405	LSM2	99	81.915	ENSMMUG00000045473	-	97	81.915	Macaca_mulatta
ENSPVAG00000012405	LSM2	100	100.000	ENSMMUG00000006832	LSM2	100	100.000	Macaca_mulatta
ENSPVAG00000012405	LSM2	100	100.000	ENSMNEG00000045355	LSM2	100	100.000	Macaca_nemestrina
ENSPVAG00000012405	LSM2	79	85.333	ENSMNEG00000040973	-	91	85.333	Macaca_nemestrina
ENSPVAG00000012405	LSM2	99	80.851	ENSMLEG00000031181	-	97	80.851	Mandrillus_leucophaeus
ENSPVAG00000012405	LSM2	100	100.000	ENSMLEG00000037369	-	100	100.000	Mandrillus_leucophaeus
ENSPVAG00000012405	LSM2	100	98.947	ENSMAMG00000010053	si:ch73-14h10.2	73	98.947	Mastacembelus_armatus
ENSPVAG00000012405	LSM2	99	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSPVAG00000012405	LSM2	100	100.000	ENSMAUG00000021966	Lsm2	100	100.000	Mesocricetus_auratus
ENSPVAG00000012405	LSM2	76	79.167	ENSMICG00000046764	-	92	79.167	Microcebus_murinus
ENSPVAG00000012405	LSM2	100	100.000	ENSMOCG00000015306	Lsm2	100	100.000	Microtus_ochrogaster
ENSPVAG00000012405	LSM2	99	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSPVAG00000012405	LSM2	99	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
ENSPVAG00000012405	LSM2	100	98.947	ENSMALG00000016490	si:ch73-14h10.2	100	98.947	Monopterus_albus
ENSPVAG00000012405	LSM2	100	100.000	MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	Mus_caroli
ENSPVAG00000012405	LSM2	100	100.000	ENSMUSG00000007050	Lsm2	100	100.000	Mus_musculus
ENSPVAG00000012405	LSM2	100	100.000	MGP_PahariEiJ_G0020485	Lsm2	100	100.000	Mus_pahari
ENSPVAG00000012405	LSM2	100	100.000	MGP_SPRETEiJ_G0022395	Lsm2	100	100.000	Mus_spretus
ENSPVAG00000012405	LSM2	100	100.000	ENSNGAG00000003997	Lsm2	100	100.000	Nannospalax_galili
ENSPVAG00000012405	LSM2	99	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSPVAG00000012405	LSM2	100	100.000	ENSNLEG00000035542	LSM2	100	100.000	Nomascus_leucogenys
ENSPVAG00000012405	LSM2	75	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSPVAG00000012405	LSM2	100	100.000	ENSOPRG00000003668	LSM2	100	100.000	Ochotona_princeps
ENSPVAG00000012405	LSM2	100	100.000	ENSODEG00000017583	LSM2	100	100.000	Octodon_degus
ENSPVAG00000012405	LSM2	100	98.947	ENSONIG00000019321	si:ch73-14h10.2	100	98.947	Oreochromis_niloticus
ENSPVAG00000012405	LSM2	99	100.000	ENSOANG00000005398	LSM2	100	100.000	Ornithorhynchus_anatinus
ENSPVAG00000012405	LSM2	100	100.000	ENSOCUG00000002583	LSM2	100	100.000	Oryctolagus_cuniculus
ENSPVAG00000012405	LSM2	100	98.947	ENSORLG00000029858	si:ch73-14h10.2	100	98.947	Oryzias_latipes
ENSPVAG00000012405	LSM2	100	75.806	ENSORLG00015000465	si:ch73-14h10.2	100	75.806	Oryzias_latipes_hsok
ENSPVAG00000012405	LSM2	100	98.947	ENSOMEG00000002892	si:ch73-14h10.2	100	98.947	Oryzias_melastigma
ENSPVAG00000012405	LSM2	99	100.000	ENSOARG00000004575	LSM2	100	100.000	Ovis_aries
ENSPVAG00000012405	LSM2	100	100.000	ENSPPAG00000032431	LSM2	100	100.000	Pan_paniscus
ENSPVAG00000012405	LSM2	79	86.667	ENSPPAG00000043941	-	93	86.667	Pan_paniscus
ENSPVAG00000012405	LSM2	100	100.000	ENSPPRG00000015353	LSM2	100	100.000	Panthera_pardus
ENSPVAG00000012405	LSM2	99	100.000	ENSPTIG00000010303	LSM2	99	100.000	Panthera_tigris_altaica
ENSPVAG00000012405	LSM2	100	100.000	ENSPTRG00000017986	LSM2	100	100.000	Pan_troglodytes
ENSPVAG00000012405	LSM2	100	100.000	ENSPANG00000024577	LSM2	100	100.000	Papio_anubis
ENSPVAG00000012405	LSM2	100	98.947	ENSPKIG00000007028	si:ch73-14h10.2	100	98.947	Paramormyrops_kingsleyae
ENSPVAG00000012405	LSM2	99	100.000	ENSPSIG00000004458	LSM2	78	100.000	Pelodiscus_sinensis
ENSPVAG00000012405	LSM2	99	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSPVAG00000012405	LSM2	99	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSPVAG00000012405	LSM2	100	98.947	ENSPFOG00000001621	si:ch73-14h10.2	100	98.947	Poecilia_formosa
ENSPVAG00000012405	LSM2	100	98.947	ENSPLAG00000017165	si:ch73-14h10.2	100	98.947	Poecilia_latipinna
ENSPVAG00000012405	LSM2	100	98.947	ENSPMEG00000019574	si:ch73-14h10.2	100	98.947	Poecilia_mexicana
ENSPVAG00000012405	LSM2	99	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSPVAG00000012405	LSM2	100	100.000	ENSPPYG00000016461	-	54	100.000	Pongo_abelii
ENSPVAG00000012405	LSM2	100	100.000	ENSPCAG00000013737	LSM2	100	100.000	Procavia_capensis
ENSPVAG00000012405	LSM2	100	100.000	ENSPCOG00000020134	LSM2	100	100.000	Propithecus_coquereli
ENSPVAG00000012405	LSM2	100	98.947	ENSPNYG00000019298	smx5	100	98.947	Pundamilia_nyererei
ENSPVAG00000012405	LSM2	100	98.947	ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	Pygocentrus_nattereri
ENSPVAG00000012405	LSM2	100	100.000	ENSRNOG00000048725	Lsm2	100	100.000	Rattus_norvegicus
ENSPVAG00000012405	LSM2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSPVAG00000012405	LSM2	100	100.000	ENSRBIG00000010172	LSM2	100	100.000	Rhinopithecus_bieti
ENSPVAG00000012405	LSM2	79	86.667	ENSRBIG00000011356	-	91	86.667	Rhinopithecus_bieti
ENSPVAG00000012405	LSM2	79	86.667	ENSRROG00000030708	-	91	86.667	Rhinopithecus_roxellana
ENSPVAG00000012405	LSM2	100	100.000	ENSRROG00000030345	LSM2	100	100.000	Rhinopithecus_roxellana
ENSPVAG00000012405	LSM2	100	63.158	YBL026W	LSM2	100	63.158	Saccharomyces_cerevisiae
ENSPVAG00000012405	LSM2	100	100.000	ENSSBOG00000018943	LSM2	100	100.000	Saimiri_boliviensis_boliviensis
ENSPVAG00000012405	LSM2	100	98.947	ENSSFOG00015006734	lsm2	100	98.947	Scleropages_formosus
ENSPVAG00000012405	LSM2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
ENSPVAG00000012405	LSM2	100	98.947	ENSSDUG00000021605	smx5	100	98.947	Seriola_dumerili
ENSPVAG00000012405	LSM2	100	98.947	ENSSLDG00000002765	si:ch73-14h10.2	100	98.947	Seriola_lalandi_dorsalis
ENSPVAG00000012405	LSM2	100	98.947	ENSSPUG00000009631	LSM2	100	98.947	Sphenodon_punctatus
ENSPVAG00000012405	LSM2	100	98.947	ENSSPAG00000016904	si:ch73-14h10.2	100	98.947	Stegastes_partitus
ENSPVAG00000012405	LSM2	100	100.000	ENSSSCG00000039021	LSM2	100	100.000	Sus_scrofa
ENSPVAG00000012405	LSM2	99	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSPVAG00000012405	LSM2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSPVAG00000012405	LSM2	100	100.000	ENSTTRG00000014131	LSM2	100	100.000	Tursiops_truncatus
ENSPVAG00000012405	LSM2	99	100.000	ENSUMAG00000013425	LSM2	65	100.000	Ursus_maritimus
ENSPVAG00000012405	LSM2	99	100.000	ENSVPAG00000001761	LSM2	100	100.000	Vicugna_pacos
ENSPVAG00000012405	LSM2	79	98.667	ENSVVUG00000016264	-	93	98.667	Vulpes_vulpes
ENSPVAG00000012405	LSM2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
ENSPVAG00000012405	LSM2	99	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSPVAG00000012405	LSM2	99	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus