EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000013945 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Plus strand
Length: 390072 bases
Position: chrGeneScaffold_182:187438-577509
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000013151	TUDOR	PF00567.24	8.9e-29	1	1
ENSPVAP00000013151	SNase	PF00565.17	1.5e-68	1	5
ENSPVAP00000013151	SNase	PF00565.17	1.5e-68	2	5
ENSPVAP00000013151	SNase	PF00565.17	1.5e-68	3	5
ENSPVAP00000013151	SNase	PF00565.17	1.5e-68	4	5
ENSPVAP00000013151	SNase	PF00565.17	1.5e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000013945	SND1-201	2718	-	ENSPVAP00000013151	905 (aa)	-	UPI00018B47E7

Gene Model

Click here to download ENSPVAG00000013945's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000013945's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000013945	SND1	100	96.923	ENSG00000197157	SND1	100	96.923	Homo_sapiens
ENSPVAG00000013945	SND1	100	81.798	ENSAPOG00000017599	snd1	99	82.647	Acanthochromis_polyacanthus
ENSPVAG00000013945	SND1	100	96.711	ENSAMEG00000004664	SND1	94	96.711	Ailuropoda_melanoleuca
ENSPVAG00000013945	SND1	98	79.955	ENSACIG00000003551	snd1	99	79.844	Amphilophus_citrinellus
ENSPVAG00000013945	SND1	100	81.579	ENSAOCG00000014166	snd1	99	82.425	Amphiprion_ocellaris
ENSPVAG00000013945	SND1	100	81.579	ENSAPEG00000007067	snd1	99	82.425	Amphiprion_percula
ENSPVAG00000013945	SND1	98	80.782	ENSATEG00000018475	snd1	88	81.984	Anabas_testudineus
ENSPVAG00000013945	SND1	100	97.143	ENSANAG00000034463	SND1	100	97.143	Aotus_nancymaae
ENSPVAG00000013945	SND1	99	81.429	ENSACLG00000022897	snd1	99	82.405	Astatotilapia_calliptera
ENSPVAG00000013945	SND1	99	82.178	ENSAMXG00000016318	snd1	98	82.739	Astyanax_mexicanus
ENSPVAG00000013945	SND1	100	96.703	ENSBTAG00000010692	SND1	100	96.703	Bos_taurus
ENSPVAG00000013945	SND1	98	45.504	WBGene00006626	tsn-1	98	46.103	Caenorhabditis_elegans
ENSPVAG00000013945	SND1	100	96.923	ENSCJAG00000017668	SND1	100	96.923	Callithrix_jacchus
ENSPVAG00000013945	SND1	100	97.143	ENSCAFG00000001700	SND1	100	97.143	Canis_familiaris
ENSPVAG00000013945	SND1	100	97.143	ENSCAFG00020021639	SND1	100	97.143	Canis_lupus_dingo
ENSPVAG00000013945	SND1	100	97.033	ENSCHIG00000023390	SND1	100	97.033	Capra_hircus
ENSPVAG00000013945	SND1	73	95.951	ENSTSYG00000004979	SND1	96	95.951	Carlito_syrichta
ENSPVAG00000013945	SND1	99	83.092	ENSCAPG00000010677	SND1	98	83.128	Cavia_aperea
ENSPVAG00000013945	SND1	100	96.154	ENSCPOG00000006251	SND1	100	96.154	Cavia_porcellus
ENSPVAG00000013945	SND1	100	97.363	ENSCCAG00000036847	SND1	100	97.363	Cebus_capucinus
ENSPVAG00000013945	SND1	100	97.143	ENSCATG00000035214	SND1	100	97.143	Cercocebus_atys
ENSPVAG00000013945	SND1	100	96.484	ENSCLAG00000011796	SND1	100	96.484	Chinchilla_lanigera
ENSPVAG00000013945	SND1	100	97.143	ENSCSAG00000010182	SND1	100	97.143	Chlorocebus_sabaeus
ENSPVAG00000013945	SND1	77	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSPVAG00000013945	SND1	100	89.890	ENSCPBG00000018094	SND1	98	90.807	Chrysemys_picta_bellii
ENSPVAG00000013945	SND1	98	55.703	ENSCING00000000524	-	98	55.703	Ciona_intestinalis
ENSPVAG00000013945	SND1	99	56.656	ENSCSAVG00000008807	-	99	56.796	Ciona_savignyi
ENSPVAG00000013945	SND1	100	97.143	ENSCANG00000035119	SND1	100	97.143	Colobus_angolensis_palliatus
ENSPVAG00000013945	SND1	100	95.385	ENSCGRG00001022514	Snd1	100	95.385	Cricetulus_griseus_chok1gshd
ENSPVAG00000013945	SND1	97	95.362	ENSCGRG00000012277	Snd1	99	95.362	Cricetulus_griseus_crigri
ENSPVAG00000013945	SND1	98	82.327	ENSCSEG00000008661	snd1	98	82.327	Cynoglossus_semilaevis
ENSPVAG00000013945	SND1	100	81.908	ENSCVAG00000010316	snd1	100	81.494	Cyprinodon_variegatus
ENSPVAG00000013945	SND1	100	82.475	ENSDARG00000006766	snd1	97	84.353	Danio_rerio
ENSPVAG00000013945	SND1	97	94.138	ENSDNOG00000006795	SND1	100	94.138	Dasypus_novemcinctus
ENSPVAG00000013945	SND1	100	96.813	ENSDORG00000000336	Snd1	100	96.813	Dipodomys_ordii
ENSPVAG00000013945	SND1	98	49.946	FBgn0035121	Tudor-SN	98	50.054	Drosophila_melanogaster
ENSPVAG00000013945	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSPVAG00000013945	SND1	57	62.467	ENSEBUG00000014201	-	84	75.410	Eptatretus_burgeri
ENSPVAG00000013945	SND1	100	95.680	ENSEASG00005008513	SND1	100	95.680	Equus_asinus_asinus
ENSPVAG00000013945	SND1	100	97.253	ENSECAG00000011451	SND1	100	97.253	Equus_caballus
ENSPVAG00000013945	SND1	100	85.055	ENSEEUG00000014737	SND1	99	84.950	Erinaceus_europaeus
ENSPVAG00000013945	SND1	99	80.263	ENSELUG00000001805	snd1	95	81.159	Esox_lucius
ENSPVAG00000013945	SND1	100	97.143	ENSFCAG00000008289	SND1	100	97.143	Felis_catus
ENSPVAG00000013945	SND1	100	96.484	ENSFDAG00000015881	SND1	100	96.484	Fukomys_damarensis
ENSPVAG00000013945	SND1	99	80.151	ENSFHEG00000004093	snd1	97	82.538	Fundulus_heteroclitus
ENSPVAG00000013945	SND1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSPVAG00000013945	SND1	100	82.127	ENSGAFG00000008421	snd1	99	82.981	Gambusia_affinis
ENSPVAG00000013945	SND1	100	53.203	ENSGACG00000019793	snd1	98	52.678	Gasterosteus_aculeatus
ENSPVAG00000013945	SND1	100	97.143	ENSGGOG00000009614	SND1	100	97.143	Gorilla_gorilla
ENSPVAG00000013945	SND1	99	81.938	ENSHBUG00000019135	snd1	99	82.405	Haplochromis_burtoni
ENSPVAG00000013945	SND1	100	96.154	ENSHGLG00000003618	SND1	100	96.154	Heterocephalus_glaber_female
ENSPVAG00000013945	SND1	99	95.691	ENSHGLG00100012449	SND1	100	95.691	Heterocephalus_glaber_male
ENSPVAG00000013945	SND1	100	80.702	ENSHCOG00000005266	snd1	98	81.879	Hippocampus_comes
ENSPVAG00000013945	SND1	100	80.963	ENSIPUG00000013279	snd1	98	81.869	Ictalurus_punctatus
ENSPVAG00000013945	SND1	100	96.813	ENSSTOG00000002140	SND1	100	96.813	Ictidomys_tridecemlineatus
ENSPVAG00000013945	SND1	100	96.923	ENSJJAG00000009561	Snd1	100	96.923	Jaculus_jaculus
ENSPVAG00000013945	SND1	100	81.908	ENSKMAG00000016997	snd1	98	82.886	Kryptolebias_marmoratus
ENSPVAG00000013945	SND1	100	80.592	ENSLBEG00000013563	snd1	99	81.313	Labrus_bergylta
ENSPVAG00000013945	SND1	99	83.352	ENSLOCG00000015537	snd1	98	83.352	Lepisosteus_oculatus
ENSPVAG00000013945	SND1	100	96.264	ENSLAFG00000009696	SND1	100	96.264	Loxodonta_africana
ENSPVAG00000013945	SND1	100	97.143	ENSMFAG00000038114	SND1	100	97.143	Macaca_fascicularis
ENSPVAG00000013945	SND1	100	97.143	ENSMMUG00000015432	SND1	100	97.143	Macaca_mulatta
ENSPVAG00000013945	SND1	100	97.143	ENSMNEG00000039808	SND1	100	97.143	Macaca_nemestrina
ENSPVAG00000013945	SND1	100	97.033	ENSMLEG00000029040	SND1	100	97.033	Mandrillus_leucophaeus
ENSPVAG00000013945	SND1	99	81.918	ENSMAMG00000011739	snd1	98	82.589	Mastacembelus_armatus
ENSPVAG00000013945	SND1	99	81.429	ENSMZEG00005005681	snd1	99	82.405	Maylandia_zebra
ENSPVAG00000013945	SND1	100	97.033	ENSMICG00000000097	SND1	100	97.033	Microcebus_murinus
ENSPVAG00000013945	SND1	100	96.264	ENSMOCG00000005040	Snd1	100	96.264	Microtus_ochrogaster
ENSPVAG00000013945	SND1	100	81.250	ENSMMOG00000001795	snd1	99	82.091	Mola_mola
ENSPVAG00000013945	SND1	99	93.868	ENSMODG00000015182	SND1	99	93.868	Monodelphis_domestica
ENSPVAG00000013945	SND1	100	81.140	ENSMALG00000012071	snd1	98	81.920	Monopterus_albus
ENSPVAG00000013945	SND1	100	95.824	MGP_CAROLIEiJ_G0028159	Snd1	100	95.824	Mus_caroli
ENSPVAG00000013945	SND1	100	95.604	ENSMUSG00000001424	Snd1	100	95.604	Mus_musculus
ENSPVAG00000013945	SND1	100	95.824	MGP_PahariEiJ_G0021917	Snd1	100	95.824	Mus_pahari
ENSPVAG00000013945	SND1	100	95.824	MGP_SPRETEiJ_G0029159	Snd1	100	95.824	Mus_spretus
ENSPVAG00000013945	SND1	100	96.484	ENSMPUG00000006545	SND1	100	96.484	Mustela_putorius_furo
ENSPVAG00000013945	SND1	97	95.196	ENSMLUG00000017130	SND1	99	95.196	Myotis_lucifugus
ENSPVAG00000013945	SND1	100	96.154	ENSNGAG00000011186	Snd1	100	96.154	Nannospalax_galili
ENSPVAG00000013945	SND1	99	81.319	ENSNBRG00000006681	snd1	99	82.294	Neolamprologus_brichardi
ENSPVAG00000013945	SND1	100	97.033	ENSNLEG00000012263	SND1	100	97.062	Nomascus_leucogenys
ENSPVAG00000013945	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSPVAG00000013945	SND1	100	96.593	ENSODEG00000011502	SND1	100	96.593	Octodon_degus
ENSPVAG00000013945	SND1	99	81.319	ENSONIG00000011481	snd1	96	82.294	Oreochromis_niloticus
ENSPVAG00000013945	SND1	98	92.455	ENSOANG00000000817	SND1	99	91.862	Ornithorhynchus_anatinus
ENSPVAG00000013945	SND1	100	95.495	ENSOCUG00000001620	SND1	100	95.495	Oryctolagus_cuniculus
ENSPVAG00000013945	SND1	98	81.788	ENSORLG00000015201	snd1	98	81.788	Oryzias_latipes
ENSPVAG00000013945	SND1	98	81.899	ENSORLG00020013991	snd1	98	81.899	Oryzias_latipes_hni
ENSPVAG00000013945	SND1	98	81.899	ENSORLG00015012436	snd1	98	81.899	Oryzias_latipes_hsok
ENSPVAG00000013945	SND1	100	81.250	ENSOMEG00000006406	snd1	98	82.438	Oryzias_melastigma
ENSPVAG00000013945	SND1	100	96.820	ENSOGAG00000013356	SND1	94	96.820	Otolemur_garnettii
ENSPVAG00000013945	SND1	97	94.011	ENSOARG00000002149	SND1	100	94.011	Ovis_aries
ENSPVAG00000013945	SND1	100	97.033	ENSPPAG00000042947	SND1	100	97.033	Pan_paniscus
ENSPVAG00000013945	SND1	100	97.143	ENSPPRG00000004494	SND1	100	97.143	Panthera_pardus
ENSPVAG00000013945	SND1	100	97.033	ENSPTIG00000014214	SND1	100	97.033	Panthera_tigris_altaica
ENSPVAG00000013945	SND1	100	97.033	ENSPTRG00000023911	SND1	100	97.033	Pan_troglodytes
ENSPVAG00000013945	SND1	97	97.059	ENSPANG00000011997	SND1	99	97.059	Papio_anubis
ENSPVAG00000013945	SND1	99	79.493	ENSPKIG00000023494	snd1	98	79.800	Paramormyrops_kingsleyae
ENSPVAG00000013945	SND1	92	80.719	ENSPMGG00000003629	snd1	100	80.719	Periophthalmus_magnuspinnatus
ENSPVAG00000013945	SND1	100	96.154	ENSPEMG00000010240	Snd1	100	96.154	Peromyscus_maniculatus_bairdii
ENSPVAG00000013945	SND1	97	71.864	ENSPMAG00000007915	-	99	71.864	Petromyzon_marinus
ENSPVAG00000013945	SND1	99	94.314	ENSPCIG00000011561	SND1	99	94.314	Phascolarctos_cinereus
ENSPVAG00000013945	SND1	100	81.579	ENSPFOG00000001557	snd1	99	82.425	Poecilia_formosa
ENSPVAG00000013945	SND1	100	81.579	ENSPLAG00000018459	snd1	96	82.425	Poecilia_latipinna
ENSPVAG00000013945	SND1	100	82.018	ENSPMEG00000006803	snd1	99	82.870	Poecilia_mexicana
ENSPVAG00000013945	SND1	100	81.908	ENSPREG00000002189	snd1	99	82.759	Poecilia_reticulata
ENSPVAG00000013945	SND1	93	96.650	ENSPPYG00000017972	SND1	100	96.650	Pongo_abelii
ENSPVAG00000013945	SND1	100	87.143	ENSPCAG00000011305	SND1	99	87.068	Procavia_capensis
ENSPVAG00000013945	SND1	100	96.923	ENSPCOG00000026791	SND1	100	96.923	Propithecus_coquereli
ENSPVAG00000013945	SND1	99	81.429	ENSPNYG00000000932	snd1	99	82.405	Pundamilia_nyererei
ENSPVAG00000013945	SND1	100	81.619	ENSPNAG00000001206	snd1	98	82.556	Pygocentrus_nattereri
ENSPVAG00000013945	SND1	99	95.485	ENSRNOG00000031173	Snd1	99	95.485	Rattus_norvegicus
ENSPVAG00000013945	SND1	76	92.101	ENSRBIG00000027782	-	93	96.008	Rhinopithecus_bieti
ENSPVAG00000013945	SND1	100	97.143	ENSRROG00000033020	SND1	100	97.143	Rhinopithecus_roxellana
ENSPVAG00000013945	SND1	100	97.143	ENSSBOG00000032461	SND1	100	97.143	Saimiri_boliviensis_boliviensis
ENSPVAG00000013945	SND1	98	90.766	ENSSHAG00000015359	SND1	100	90.766	Sarcophilus_harrisii
ENSPVAG00000013945	SND1	100	80.522	ENSSFOG00015001103	snd1	98	81.576	Scleropages_formosus
ENSPVAG00000013945	SND1	98	81.544	ENSSMAG00000001932	snd1	93	81.292	Scophthalmus_maximus
ENSPVAG00000013945	SND1	100	81.469	ENSSDUG00000002699	snd1	92	82.314	Seriola_dumerili
ENSPVAG00000013945	SND1	100	75.771	ENSSLDG00000001950	snd1	98	76.536	Seriola_lalandi_dorsalis
ENSPVAG00000013945	SND1	86	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSPVAG00000013945	SND1	73	85.565	ENSSPUG00000017586	SND1	96	85.565	Sphenodon_punctatus
ENSPVAG00000013945	SND1	72	81.557	ENSSPAG00000021398	snd1	96	83.595	Stegastes_partitus
ENSPVAG00000013945	SND1	100	97.033	ENSSSCG00000016590	SND1	100	97.033	Sus_scrofa
ENSPVAG00000013945	SND1	99	82.310	ENSTRUG00000014067	snd1	98	81.767	Takifugu_rubripes
ENSPVAG00000013945	SND1	100	81.360	ENSTNIG00000011019	snd1	98	82.327	Tetraodon_nigroviridis
ENSPVAG00000013945	SND1	93	93.750	ENSTBEG00000003999	SND1	100	93.750	Tupaia_belangeri
ENSPVAG00000013945	SND1	100	92.418	ENSTTRG00000006059	SND1	100	92.418	Tursiops_truncatus
ENSPVAG00000013945	SND1	91	96.198	ENSUAMG00000005604	-	93	96.198	Ursus_americanus
ENSPVAG00000013945	SND1	70	89.091	ENSUAMG00000002820	-	86	88.978	Ursus_americanus
ENSPVAG00000013945	SND1	100	96.923	ENSUMAG00000005960	SND1	100	96.923	Ursus_maritimus
ENSPVAG00000013945	SND1	73	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSPVAG00000013945	SND1	100	96.923	ENSVVUG00000007226	SND1	100	96.923	Vulpes_vulpes
ENSPVAG00000013945	SND1	97	82.825	ENSXETG00000023043	snd1	100	82.723	Xenopus_tropicalis
ENSPVAG00000013945	SND1	92	79.335	ENSXCOG00000013629	snd1	99	79.335	Xiphophorus_couchianus
ENSPVAG00000013945	SND1	100	82.127	ENSXMAG00000011469	snd1	99	82.981	Xiphophorus_maculatus