EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000014075 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 12848 bases
Position: chrGeneScaffold_1312:16-12863
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000013272	Smg4_UPF3	PF03467.15	1.4e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000014074	UPF3B-201	1446	-	ENSPVAP00000013272	481 (aa)	-	UPI00018B0F7B

Gene Model

Click here to download ENSPVAG00000014075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000014075's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000014075	UPF3B	90	40.225	ENSG00000169062	UPF3A	85	40.271	Homo_sapiens
ENSPVAG00000014075	UPF3B	100	81.573	ENSG00000125351	UPF3B	100	81.573	Homo_sapiens
ENSPVAG00000014075	UPF3B	96	47.246	ENSAPOG00000012775	upf3b	96	47.468	Acanthochromis_polyacanthus
ENSPVAG00000014075	UPF3B	100	83.023	ENSAMEG00000000163	UPF3B	100	83.023	Ailuropoda_melanoleuca
ENSPVAG00000014075	UPF3B	94	43.534	ENSACIG00000013582	upf3b	94	47.447	Amphilophus_citrinellus
ENSPVAG00000014075	UPF3B	73	50.423	ENSAOCG00000000706	upf3b	96	46.835	Amphiprion_ocellaris
ENSPVAG00000014075	UPF3B	73	51.268	ENSAPEG00000005545	upf3b	96	47.679	Amphiprion_percula
ENSPVAG00000014075	UPF3B	94	47.527	ENSATEG00000018742	upf3b	94	48.718	Anabas_testudineus
ENSPVAG00000014075	UPF3B	90	57.500	ENSACAG00000003625	UPF3B	91	57.500	Anolis_carolinensis
ENSPVAG00000014075	UPF3B	100	81.366	ENSANAG00000021894	-	100	87.755	Aotus_nancymaae
ENSPVAG00000014075	UPF3B	100	73.292	ENSANAG00000025598	-	100	93.805	Aotus_nancymaae
ENSPVAG00000014075	UPF3B	61	55.593	ENSACLG00000001649	upf3b	97	47.689	Astatotilapia_calliptera
ENSPVAG00000014075	UPF3B	64	86.842	ENSBTAG00000035615	UPF3B	100	86.842	Bos_taurus
ENSPVAG00000014075	UPF3B	100	81.366	ENSCJAG00000004975	UPF3B	100	87.755	Callithrix_jacchus
ENSPVAG00000014075	UPF3B	100	82.195	ENSCAFG00000018426	UPF3B	100	82.195	Canis_familiaris
ENSPVAG00000014075	UPF3B	81	97.436	ENSCAFG00020004074	UPF3B	100	96.581	Canis_lupus_dingo
ENSPVAG00000014075	UPF3B	100	82.402	ENSCHIG00000000247	-	100	82.402	Capra_hircus
ENSPVAG00000014075	UPF3B	91	52.740	ENSCHIG00000011454	-	92	49.315	Capra_hircus
ENSPVAG00000014075	UPF3B	98	82.203	ENSCHIG00000018011	-	100	92.105	Capra_hircus
ENSPVAG00000014075	UPF3B	100	79.089	ENSTSYG00000014690	UPF3B	100	89.796	Carlito_syrichta
ENSPVAG00000014075	UPF3B	98	46.008	ENSCCAG00000029813	-	99	46.122	Cebus_capucinus
ENSPVAG00000014075	UPF3B	66	87.755	ENSCCAG00000021964	-	100	87.755	Cebus_capucinus
ENSPVAG00000014075	UPF3B	100	81.366	ENSCATG00000017506	UPF3B	100	87.755	Cercocebus_atys
ENSPVAG00000014075	UPF3B	100	77.226	ENSCLAG00000003260	UPF3B	100	77.226	Chinchilla_lanigera
ENSPVAG00000014075	UPF3B	100	81.573	ENSCSAG00000018348	UPF3B	100	81.573	Chlorocebus_sabaeus
ENSPVAG00000014075	UPF3B	78	70.064	ENSCPBG00000020685	UPF3B	74	82.759	Chrysemys_picta_bellii
ENSPVAG00000014075	UPF3B	66	87.755	ENSCANG00000029220	UPF3B	100	87.755	Colobus_angolensis_palliatus
ENSPVAG00000014075	UPF3B	100	69.278	ENSCGRG00001006858	-	100	71.134	Cricetulus_griseus_chok1gshd
ENSPVAG00000014075	UPF3B	76	70.879	ENSCGRG00001013643	-	95	68.407	Cricetulus_griseus_chok1gshd
ENSPVAG00000014075	UPF3B	89	69.053	ENSCGRG00000007627	Upf3b	100	71.132	Cricetulus_griseus_crigri
ENSPVAG00000014075	UPF3B	94	47.277	ENSCSEG00000002046	upf3b	90	48.373	Cynoglossus_semilaevis
ENSPVAG00000014075	UPF3B	98	47.433	ENSDARG00000000489	upf3b	99	47.454	Danio_rerio
ENSPVAG00000014075	UPF3B	100	80.952	ENSDNOG00000008665	UPF3B	100	80.952	Dasypus_novemcinctus
ENSPVAG00000014075	UPF3B	100	71.429	ENSDORG00000006077	Upf3b	100	71.429	Dipodomys_ordii
ENSPVAG00000014075	UPF3B	81	98.718	ENSEASG00005012919	UPF3B	100	97.345	Equus_asinus_asinus
ENSPVAG00000014075	UPF3B	81	98.718	ENSECAG00000016947	UPF3B	100	89.474	Equus_caballus
ENSPVAG00000014075	UPF3B	100	81.443	ENSFCAG00000004388	UPF3B	100	82.062	Felis_catus
ENSPVAG00000014075	UPF3B	98	56.653	ENSFALG00000001569	UPF3B	98	56.048	Ficedula_albicollis
ENSPVAG00000014075	UPF3B	100	78.054	ENSFDAG00000018869	UPF3B	100	78.054	Fukomys_damarensis
ENSPVAG00000014075	UPF3B	94	45.474	ENSGMOG00000001621	upf3b	87	48.095	Gadus_morhua
ENSPVAG00000014075	UPF3B	90	57.596	ENSGALG00000008618	UPF3B	98	57.526	Gallus_gallus
ENSPVAG00000014075	UPF3B	86	46.411	ENSGAFG00000000829	upf3b	96	46.170	Gambusia_affinis
ENSPVAG00000014075	UPF3B	92	46.930	ENSGACG00000017435	upf3b	100	46.856	Gasterosteus_aculeatus
ENSPVAG00000014075	UPF3B	98	56.108	ENSGAGG00000001219	UPF3B	91	58.145	Gopherus_agassizii
ENSPVAG00000014075	UPF3B	90	34.910	ENSGGOG00000043074	-	86	32.432	Gorilla_gorilla
ENSPVAG00000014075	UPF3B	100	81.573	ENSGGOG00000023995	UPF3B	100	87.755	Gorilla_gorilla
ENSPVAG00000014075	UPF3B	89	35.308	ENSGGOG00000041219	-	91	32.353	Gorilla_gorilla
ENSPVAG00000014075	UPF3B	61	55.932	ENSHBUG00000017393	upf3b	97	47.689	Haplochromis_burtoni
ENSPVAG00000014075	UPF3B	84	76.049	ENSHGLG00000011189	-	93	76.296	Heterocephalus_glaber_female
ENSPVAG00000014075	UPF3B	100	77.640	ENSHGLG00000019582	-	100	77.640	Heterocephalus_glaber_female
ENSPVAG00000014075	UPF3B	100	74.327	ENSHGLG00100002042	-	100	74.948	Heterocephalus_glaber_male
ENSPVAG00000014075	UPF3B	84	75.802	ENSHGLG00100001889	-	93	75.802	Heterocephalus_glaber_male
ENSPVAG00000014075	UPF3B	99	45.082	ENSHCOG00000017004	upf3b	98	45.918	Hippocampus_comes
ENSPVAG00000014075	UPF3B	89	48.513	ENSIPUG00000019249	upf3b	98	47.292	Ictalurus_punctatus
ENSPVAG00000014075	UPF3B	100	76.398	ENSSTOG00000001101	UPF3B	100	76.398	Ictidomys_tridecemlineatus
ENSPVAG00000014075	UPF3B	100	73.196	ENSJJAG00000000053	Upf3b	100	75.052	Jaculus_jaculus
ENSPVAG00000014075	UPF3B	96	43.404	ENSKMAG00000020300	upf3b	96	46.300	Kryptolebias_marmoratus
ENSPVAG00000014075	UPF3B	62	53.667	ENSLBEG00000028689	upf3b	59	53.667	Labrus_bergylta
ENSPVAG00000014075	UPF3B	90	49.778	ENSLACG00000008691	UPF3B	100	49.304	Latimeria_chalumnae
ENSPVAG00000014075	UPF3B	90	42.572	ENSLOCG00000002665	upf3a	91	38.926	Lepisosteus_oculatus
ENSPVAG00000014075	UPF3B	85	37.019	ENSLAFG00000023358	UPF3A	98	36.534	Loxodonta_africana
ENSPVAG00000014075	UPF3B	100	77.847	ENSLAFG00000001267	UPF3B	100	77.847	Loxodonta_africana
ENSPVAG00000014075	UPF3B	100	81.159	ENSMFAG00000045414	UPF3B	100	87.755	Macaca_fascicularis
ENSPVAG00000014075	UPF3B	100	81.159	ENSMMUG00000020222	UPF3B	100	87.755	Macaca_mulatta
ENSPVAG00000014075	UPF3B	100	81.159	ENSMNEG00000039794	UPF3B	100	87.755	Macaca_nemestrina
ENSPVAG00000014075	UPF3B	100	81.366	ENSMLEG00000010999	UPF3B	100	87.755	Mandrillus_leucophaeus
ENSPVAG00000014075	UPF3B	61	55.593	ENSMZEG00005007871	upf3b	97	47.689	Maylandia_zebra
ENSPVAG00000014075	UPF3B	85	40.047	ENSMGAG00000014837	UPF3A	98	39.953	Meleagris_gallopavo
ENSPVAG00000014075	UPF3B	80	55.076	ENSMGAG00000007728	UPF3B	97	56.345	Meleagris_gallopavo
ENSPVAG00000014075	UPF3B	100	71.340	ENSMAUG00000008705	Upf3b	100	73.196	Mesocricetus_auratus
ENSPVAG00000014075	UPF3B	66	87.755	ENSMICG00000001743	UPF3B	100	87.755	Microcebus_murinus
ENSPVAG00000014075	UPF3B	100	72.990	ENSMOCG00000017893	Upf3b	100	74.639	Microtus_ochrogaster
ENSPVAG00000014075	UPF3B	97	43.737	ENSMMOG00000004183	upf3b	96	44.703	Mola_mola
ENSPVAG00000014075	UPF3B	88	62.731	ENSMODG00000010232	UPF3B	98	62.877	Monodelphis_domestica
ENSPVAG00000014075	UPF3B	88	41.629	ENSMODG00000003159	UPF3A	96	41.986	Monodelphis_domestica
ENSPVAG00000014075	UPF3B	61	55.254	ENSMALG00000008042	upf3b	96	47.390	Monopterus_albus
ENSPVAG00000014075	UPF3B	100	68.660	MGP_CAROLIEiJ_G0032999	Upf3b	100	73.359	Mus_caroli
ENSPVAG00000014075	UPF3B	100	69.072	ENSMUSG00000036572	Upf3b	99	73.745	Mus_musculus
ENSPVAG00000014075	UPF3B	100	68.041	MGP_PahariEiJ_G0031543	Upf3b	100	72.587	Mus_pahari
ENSPVAG00000014075	UPF3B	100	69.072	MGP_SPRETEiJ_G0034152	Upf3b	100	73.745	Mus_spretus
ENSPVAG00000014075	UPF3B	98	79.237	ENSMPUG00000001531	UPF3B	100	79.237	Mustela_putorius_furo
ENSPVAG00000014075	UPF3B	100	79.296	ENSMLUG00000010821	UPF3B	100	79.296	Myotis_lucifugus
ENSPVAG00000014075	UPF3B	100	70.103	ENSNGAG00000008231	Upf3b	100	72.577	Nannospalax_galili
ENSPVAG00000014075	UPF3B	85	40.521	ENSNLEG00000007563	UPF3A	82	36.124	Nomascus_leucogenys
ENSPVAG00000014075	UPF3B	97	81.064	ENSNLEG00000014897	UPF3B	100	81.159	Nomascus_leucogenys
ENSPVAG00000014075	UPF3B	58	68.000	ENSMEUG00000015615	UPF3B	73	68.000	Notamacropus_eugenii
ENSPVAG00000014075	UPF3B	100	75.776	ENSODEG00000002186	-	100	75.776	Octodon_degus
ENSPVAG00000014075	UPF3B	61	56.610	ENSONIG00000002536	upf3b	99	47.571	Oreochromis_niloticus
ENSPVAG00000014075	UPF3B	88	52.535	ENSOANG00000002594	-	98	51.843	Ornithorhynchus_anatinus
ENSPVAG00000014075	UPF3B	100	81.159	ENSOCUG00000010213	UPF3B	100	81.159	Oryctolagus_cuniculus
ENSPVAG00000014075	UPF3B	84	49.279	ENSORLG00000001026	upf3b	95	47.527	Oryzias_latipes
ENSPVAG00000014075	UPF3B	87	37.079	ENSORLG00020014317	upf3a	84	35.831	Oryzias_latipes_hni
ENSPVAG00000014075	UPF3B	84	48.804	ENSORLG00020003758	upf3b	95	47.323	Oryzias_latipes_hni
ENSPVAG00000014075	UPF3B	84	49.038	ENSORLG00015012954	upf3b	95	47.312	Oryzias_latipes_hsok
ENSPVAG00000014075	UPF3B	100	78.054	ENSOGAG00000004643	-	100	78.054	Otolemur_garnettii
ENSPVAG00000014075	UPF3B	98	65.900	ENSOGAG00000033003	-	100	65.900	Otolemur_garnettii
ENSPVAG00000014075	UPF3B	90	56.651	ENSOARG00000007869	-	99	54.587	Ovis_aries
ENSPVAG00000014075	UPF3B	100	81.893	ENSOARG00000016051	-	100	81.893	Ovis_aries
ENSPVAG00000014075	UPF3B	100	81.573	ENSPPAG00000040390	UPF3B	100	87.755	Pan_paniscus
ENSPVAG00000014075	UPF3B	100	82.402	ENSPPRG00000023536	UPF3B	100	82.402	Panthera_pardus
ENSPVAG00000014075	UPF3B	100	78.270	ENSPTIG00000015264	UPF3B	100	85.714	Panthera_tigris_altaica
ENSPVAG00000014075	UPF3B	89	31.828	ENSPTRG00000041187	-	91	32.127	Pan_troglodytes
ENSPVAG00000014075	UPF3B	100	81.573	ENSPTRG00000022228	UPF3B	100	87.755	Pan_troglodytes
ENSPVAG00000014075	UPF3B	89	31.724	ENSPTRG00000041835	-	90	32.579	Pan_troglodytes
ENSPVAG00000014075	UPF3B	90	39.775	ENSPTRG00000006073	UPF3A	84	35.973	Pan_troglodytes
ENSPVAG00000014075	UPF3B	100	81.366	ENSPANG00000000900	UPF3B	100	87.755	Papio_anubis
ENSPVAG00000014075	UPF3B	100	44.332	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSPVAG00000014075	UPF3B	56	60.727	ENSPSIG00000005833	UPF3B	97	58.537	Pelodiscus_sinensis
ENSPVAG00000014075	UPF3B	85	42.130	ENSPSIG00000007468	UPF3A	98	42.130	Pelodiscus_sinensis
ENSPVAG00000014075	UPF3B	56	57.455	ENSPMGG00000016067	upf3b	93	57.455	Periophthalmus_magnuspinnatus
ENSPVAG00000014075	UPF3B	100	73.868	ENSPEMG00000012352	Upf3b	100	75.720	Peromyscus_maniculatus_bairdii
ENSPVAG00000014075	UPF3B	75	76.119	ENSPCIG00000028914	UPF3B	72	82.500	Phascolarctos_cinereus
ENSPVAG00000014075	UPF3B	96	45.824	ENSPLAG00000019922	upf3b	96	47.021	Poecilia_latipinna
ENSPVAG00000014075	UPF3B	96	45.824	ENSPLAG00000005105	upf3b	96	47.021	Poecilia_latipinna
ENSPVAG00000014075	UPF3B	96	45.824	ENSPMEG00000023532	upf3b	96	47.021	Poecilia_mexicana
ENSPVAG00000014075	UPF3B	68	85.714	ENSPPYG00000020675	-	100	85.714	Pongo_abelii
ENSPVAG00000014075	UPF3B	85	40.521	ENSPPYG00000005536	UPF3A	83	40.521	Pongo_abelii
ENSPVAG00000014075	UPF3B	100	80.124	ENSPCAG00000009464	UPF3B	100	80.124	Procavia_capensis
ENSPVAG00000014075	UPF3B	100	81.612	ENSPCOG00000021960	UPF3B	100	87.755	Propithecus_coquereli
ENSPVAG00000014075	UPF3B	96	46.709	ENSPNYG00000009846	upf3b	96	47.890	Pundamilia_nyererei
ENSPVAG00000014075	UPF3B	90	46.980	ENSPNAG00000021528	upf3b	94	48.546	Pygocentrus_nattereri
ENSPVAG00000014075	UPF3B	100	72.371	ENSRNOG00000039994	Upf3b	100	74.021	Rattus_norvegicus
ENSPVAG00000014075	UPF3B	82	76.071	ENSRBIG00000037219	UPF3B	100	76.071	Rhinopithecus_bieti
ENSPVAG00000014075	UPF3B	100	81.573	ENSRROG00000041031	UPF3B	100	87.755	Rhinopithecus_roxellana
ENSPVAG00000014075	UPF3B	100	80.952	ENSSBOG00000019740	UPF3B	100	87.755	Saimiri_boliviensis_boliviensis
ENSPVAG00000014075	UPF3B	89	62.385	ENSSHAG00000008634	UPF3B	99	58.980	Sarcophilus_harrisii
ENSPVAG00000014075	UPF3B	88	40.816	ENSSHAG00000009895	UPF3A	98	41.176	Sarcophilus_harrisii
ENSPVAG00000014075	UPF3B	71	53.179	ENSSFOG00015005614	upf3b	94	50.673	Scleropages_formosus
ENSPVAG00000014075	UPF3B	65	53.016	ENSSMAG00000012913	upf3b	84	56.934	Scophthalmus_maximus
ENSPVAG00000014075	UPF3B	50	58.607	ENSSDUG00000005682	upf3b	97	46.234	Seriola_dumerili
ENSPVAG00000014075	UPF3B	60	54.608	ENSSLDG00000003130	upf3b	97	46.234	Seriola_lalandi_dorsalis
ENSPVAG00000014075	UPF3B	73	34.262	ENSSARG00000007262	UPF3A	68	34.983	Sorex_araneus
ENSPVAG00000014075	UPF3B	89	70.737	ENSSARG00000004147	UPF3B	100	70.737	Sorex_araneus
ENSPVAG00000014075	UPF3B	79	74.214	ENSSPUG00000013082	UPF3B	80	73.418	Sphenodon_punctatus
ENSPVAG00000014075	UPF3B	73	49.148	ENSSPAG00000009989	upf3b	96	47.246	Stegastes_partitus
ENSPVAG00000014075	UPF3B	100	79.503	ENSSSCG00000012617	UPF3B	100	79.503	Sus_scrofa
ENSPVAG00000014075	UPF3B	84	44.019	ENSTGUG00000009493	UPF3A	99	43.914	Taeniopygia_guttata
ENSPVAG00000014075	UPF3B	88	57.870	ENSTGUG00000003413	UPF3B	98	58.102	Taeniopygia_guttata
ENSPVAG00000014075	UPF3B	87	46.714	ENSTRUG00000010645	upf3b	94	48.174	Takifugu_rubripes
ENSPVAG00000014075	UPF3B	90	44.875	ENSTNIG00000015763	upf3b	93	43.636	Tetraodon_nigroviridis
ENSPVAG00000014075	UPF3B	100	80.952	ENSTBEG00000003229	UPF3B	100	80.952	Tupaia_belangeri
ENSPVAG00000014075	UPF3B	82	97.436	ENSUAMG00000024565	UPF3B	100	94.690	Ursus_americanus
ENSPVAG00000014075	UPF3B	75	81.208	ENSUMAG00000002150	UPF3B	82	81.208	Ursus_maritimus
ENSPVAG00000014075	UPF3B	85	79.512	ENSVPAG00000009971	UPF3B	100	79.512	Vicugna_pacos
ENSPVAG00000014075	UPF3B	81	96.795	ENSVVUG00000011594	UPF3B	100	95.726	Vulpes_vulpes
ENSPVAG00000014075	UPF3B	88	44.804	ENSXETG00000007440	upf3b	95	45.475	Xenopus_tropicalis
ENSPVAG00000014075	UPF3B	84	36.867	ENSXETG00000002572	upf3a	90	36.779	Xenopus_tropicalis
ENSPVAG00000014075	UPF3B	58	54.770	ENSXCOG00000016586	upf3b	93	64.331	Xiphophorus_couchianus
ENSPVAG00000014075	UPF3B	94	46.507	ENSXMAG00000013680	upf3b	94	46.739	Xiphophorus_maculatus