EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPVAG00000016748 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pteropus_vampyrus
Status: putative
Strand: Minus strand
Length: 20327 bases
Position: chrGeneScaffold_2532:101629-121955
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPVAP00000015804	EST1	PF10374.9	6.9e-12	1	1
ENSPVAP00000015804	EST1_DNA_bind	PF10373.9	6.7e-40	1	2
ENSPVAP00000015804	EST1_DNA_bind	PF10373.9	6.7e-40	2	2
ENSPVAP00000015804	PIN_4	PF13638.6	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPVAT00000016751	SMG5-201	3051	-	ENSPVAP00000015804	1016 (aa)	-	UPI00018B2A5F

Gene Model

Click here to download ENSPVAG00000016748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPVAG00000016748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPVAG00000016748	SMG5	100	86.122	ENSG00000198952	SMG5	100	86.122	Homo_sapiens
ENSPVAG00000016748	SMG5	99	59.941	ENSAPOG00000019690	smg5	99	59.433	Acanthochromis_polyacanthus
ENSPVAG00000016748	SMG5	98	84.290	ENSAMEG00000014458	SMG5	100	84.290	Ailuropoda_melanoleuca
ENSPVAG00000016748	SMG5	99	58.863	ENSACIG00000001353	smg5	99	59.249	Amphilophus_citrinellus
ENSPVAG00000016748	SMG5	98	58.119	ENSAOCG00000019483	smg5	93	65.566	Amphiprion_ocellaris
ENSPVAG00000016748	SMG5	98	59.422	ENSAPEG00000022949	smg5	93	65.330	Amphiprion_percula
ENSPVAG00000016748	SMG5	99	58.756	ENSATEG00000005348	smg5	99	60.621	Anabas_testudineus
ENSPVAG00000016748	SMG5	98	70.049	ENSAPLG00000010263	SMG5	100	70.049	Anas_platyrhynchos
ENSPVAG00000016748	SMG5	100	85.728	ENSANAG00000032899	SMG5	100	85.728	Aotus_nancymaae
ENSPVAG00000016748	SMG5	99	58.784	ENSACLG00000009311	smg5	99	58.784	Astatotilapia_calliptera
ENSPVAG00000016748	SMG5	92	65.721	ENSAMXG00000024616	smg5	99	56.073	Astyanax_mexicanus
ENSPVAG00000016748	SMG5	100	85.531	ENSBTAG00000009435	SMG5	100	85.531	Bos_taurus
ENSPVAG00000016748	SMG5	99	40.802	ENSBTAG00000021747	-	99	40.646	Bos_taurus
ENSPVAG00000016748	SMG5	100	85.728	ENSCJAG00000005684	SMG5	100	85.728	Callithrix_jacchus
ENSPVAG00000016748	SMG5	100	84.843	ENSCAFG00000016839	SMG5	100	84.843	Canis_familiaris
ENSPVAG00000016748	SMG5	100	84.843	ENSCAFG00020006061	SMG5	100	84.843	Canis_lupus_dingo
ENSPVAG00000016748	SMG5	94	51.087	ENSCHIG00000006323	-	94	51.087	Capra_hircus
ENSPVAG00000016748	SMG5	100	85.531	ENSCHIG00000007709	SMG5	100	85.531	Capra_hircus
ENSPVAG00000016748	SMG5	100	85.939	ENSTSYG00000004099	SMG5	100	85.939	Carlito_syrichta
ENSPVAG00000016748	SMG5	83	100.000	ENSCAPG00000003631	SMG5	92	100.000	Cavia_aperea
ENSPVAG00000016748	SMG5	100	85.560	ENSCPOG00000015696	SMG5	100	84.479	Cavia_porcellus
ENSPVAG00000016748	SMG5	100	86.024	ENSCCAG00000027409	SMG5	100	86.024	Cebus_capucinus
ENSPVAG00000016748	SMG5	100	86.122	ENSCATG00000030539	SMG5	100	86.122	Cercocebus_atys
ENSPVAG00000016748	SMG5	100	86.542	ENSCLAG00000003983	SMG5	100	85.363	Chinchilla_lanigera
ENSPVAG00000016748	SMG5	100	86.024	ENSCSAG00000002120	SMG5	100	86.024	Chlorocebus_sabaeus
ENSPVAG00000016748	SMG5	54	85.766	ENSCHOG00000008741	-	57	85.766	Choloepus_hoffmanni
ENSPVAG00000016748	SMG5	94	68.731	ENSCPBG00000025848	SMG5	100	69.675	Chrysemys_picta_bellii
ENSPVAG00000016748	SMG5	87	53.191	ENSCING00000008706	-	92	53.191	Ciona_intestinalis
ENSPVAG00000016748	SMG5	100	82.480	ENSCANG00000029208	SMG5	100	82.480	Colobus_angolensis_palliatus
ENSPVAG00000016748	SMG5	100	82.515	ENSCGRG00001006336	Smg5	100	82.203	Cricetulus_griseus_chok1gshd
ENSPVAG00000016748	SMG5	98	82.495	ENSCGRG00000005111	Smg5	100	82.157	Cricetulus_griseus_crigri
ENSPVAG00000016748	SMG5	99	58.317	ENSCSEG00000014220	smg5	99	58.668	Cynoglossus_semilaevis
ENSPVAG00000016748	SMG5	89	82.292	ENSCVAG00000000529	smg5	90	82.292	Cyprinodon_variegatus
ENSPVAG00000016748	SMG5	93	66.430	ENSDARG00000041481	smg5	99	56.715	Danio_rerio
ENSPVAG00000016748	SMG5	100	82.307	ENSDNOG00000000051	SMG5	100	82.307	Dasypus_novemcinctus
ENSPVAG00000016748	SMG5	84	60.000	ENSDNOG00000039862	-	93	60.000	Dasypus_novemcinctus
ENSPVAG00000016748	SMG5	100	84.971	ENSDORG00000010382	Smg5	100	84.071	Dipodomys_ordii
ENSPVAG00000016748	SMG5	58	35.897	FBgn0019890	Smg5	56	35.897	Drosophila_melanogaster
ENSPVAG00000016748	SMG5	82	96.117	ENSETEG00000010336	SMG5	91	96.117	Echinops_telfairi
ENSPVAG00000016748	SMG5	85	72.000	ENSEBUG00000003739	smg5	92	72.000	Eptatretus_burgeri
ENSPVAG00000016748	SMG5	100	86.614	ENSEASG00005019122	SMG5	100	86.614	Equus_asinus_asinus
ENSPVAG00000016748	SMG5	92	94.949	ENSECAG00000001389	SMG5	95	94.949	Equus_caballus
ENSPVAG00000016748	SMG5	72	91.645	ENSEEUG00000012690	SMG5	73	91.601	Erinaceus_europaeus
ENSPVAG00000016748	SMG5	99	59.306	ENSELUG00000012585	smg5	99	59.016	Esox_lucius
ENSPVAG00000016748	SMG5	100	85.039	ENSFCAG00000011783	SMG5	100	85.039	Felis_catus
ENSPVAG00000016748	SMG5	53	96.000	ENSFALG00000001166	-	90	96.000	Ficedula_albicollis
ENSPVAG00000016748	SMG5	98	84.391	ENSFDAG00000017388	SMG5	100	84.491	Fukomys_damarensis
ENSPVAG00000016748	SMG5	97	54.728	ENSFHEG00000013939	smg5	95	65.176	Fundulus_heteroclitus
ENSPVAG00000016748	SMG5	99	55.869	ENSGMOG00000007310	smg5	93	63.514	Gadus_morhua
ENSPVAG00000016748	SMG5	99	69.913	ENSGALG00000029918	-	100	69.429	Gallus_gallus
ENSPVAG00000016748	SMG5	83	64.856	ENSGAFG00000021691	smg5	88	64.884	Gambusia_affinis
ENSPVAG00000016748	SMG5	91	64.637	ENSGACG00000013142	smg5	99	55.747	Gasterosteus_aculeatus
ENSPVAG00000016748	SMG5	100	71.130	ENSGAGG00000016131	SMG5	100	71.035	Gopherus_agassizii
ENSPVAG00000016748	SMG5	100	86.024	ENSGGOG00000010932	SMG5	100	86.024	Gorilla_gorilla
ENSPVAG00000016748	SMG5	99	58.654	ENSHBUG00000008654	smg5	93	64.336	Haplochromis_burtoni
ENSPVAG00000016748	SMG5	100	84.578	ENSHGLG00000019152	SMG5	100	84.676	Heterocephalus_glaber_female
ENSPVAG00000016748	SMG5	90	84.228	ENSHGLG00100015948	SMG5	99	84.337	Heterocephalus_glaber_male
ENSPVAG00000016748	SMG5	86	62.745	ENSHCOG00000010229	smg5	92	62.745	Hippocampus_comes
ENSPVAG00000016748	SMG5	99	55.687	ENSIPUG00000006624	Smg5	99	55.383	Ictalurus_punctatus
ENSPVAG00000016748	SMG5	100	86.614	ENSSTOG00000001780	SMG5	100	86.614	Ictidomys_tridecemlineatus
ENSPVAG00000016748	SMG5	100	82.826	ENSJJAG00000022763	Smg5	100	81.551	Jaculus_jaculus
ENSPVAG00000016748	SMG5	92	64.569	ENSKMAG00000014586	smg5	93	65.581	Kryptolebias_marmoratus
ENSPVAG00000016748	SMG5	99	58.841	ENSLBEG00000002145	smg5	99	58.671	Labrus_bergylta
ENSPVAG00000016748	SMG5	100	57.564	ENSLACG00000010521	SMG5	100	57.674	Latimeria_chalumnae
ENSPVAG00000016748	SMG5	95	65.962	ENSLOCG00000008380	smg5	92	66.587	Lepisosteus_oculatus
ENSPVAG00000016748	SMG5	100	84.744	ENSLAFG00000006241	SMG5	100	84.744	Loxodonta_africana
ENSPVAG00000016748	SMG5	100	86.024	ENSMFAG00000045357	SMG5	100	86.024	Macaca_fascicularis
ENSPVAG00000016748	SMG5	100	86.024	ENSMMUG00000000090	SMG5	100	86.024	Macaca_mulatta
ENSPVAG00000016748	SMG5	100	85.925	ENSMNEG00000044425	SMG5	100	85.925	Macaca_nemestrina
ENSPVAG00000016748	SMG5	91	89.831	ENSMLEG00000041192	SMG5	93	89.831	Mandrillus_leucophaeus
ENSPVAG00000016748	SMG5	99	55.219	ENSMAMG00000010683	smg5	93	65.654	Mastacembelus_armatus
ENSPVAG00000016748	SMG5	63	56.970	ENSMZEG00005016543	smg5	100	55.656	Maylandia_zebra
ENSPVAG00000016748	SMG5	99	57.854	ENSMZEG00005015815	smg5	99	57.047	Maylandia_zebra
ENSPVAG00000016748	SMG5	100	82.318	ENSMAUG00000010381	Smg5	100	82.104	Mesocricetus_auratus
ENSPVAG00000016748	SMG5	100	86.220	ENSMICG00000002257	SMG5	100	86.220	Microcebus_murinus
ENSPVAG00000016748	SMG5	100	81.863	ENSMOCG00000016590	Smg5	100	81.060	Microtus_ochrogaster
ENSPVAG00000016748	SMG5	99	52.650	ENSMMOG00000017199	smg5	99	52.688	Mola_mola
ENSPVAG00000016748	SMG5	75	39.895	ENSMODG00000004735	-	86	39.894	Monodelphis_domestica
ENSPVAG00000016748	SMG5	93	33.577	ENSMODG00000004532	-	85	37.467	Monodelphis_domestica
ENSPVAG00000016748	SMG5	72	47.945	ENSMODG00000010675	-	80	47.945	Monodelphis_domestica
ENSPVAG00000016748	SMG5	87	80.518	ENSMODG00000016901	SMG5	98	80.180	Monodelphis_domestica
ENSPVAG00000016748	SMG5	99	53.422	ENSMALG00000010375	smg5	93	62.383	Monopterus_albus
ENSPVAG00000016748	SMG5	100	82.515	MGP_CAROLIEiJ_G0025163	Smg5	100	82.006	Mus_caroli
ENSPVAG00000016748	SMG5	100	82.809	ENSMUSG00000001415	Smg5	100	82.399	Mus_musculus
ENSPVAG00000016748	SMG5	100	82.532	MGP_PahariEiJ_G0026606	Smg5	100	81.943	Mus_pahari
ENSPVAG00000016748	SMG5	100	82.711	MGP_SPRETEiJ_G0026104	Smg5	100	82.301	Mus_spretus
ENSPVAG00000016748	SMG5	94	84.000	ENSMPUG00000004546	SMG5	100	84.000	Mustela_putorius_furo
ENSPVAG00000016748	SMG5	100	85.714	ENSMLUG00000008518	SMG5	100	84.789	Myotis_lucifugus
ENSPVAG00000016748	SMG5	100	83.776	ENSNGAG00000020706	Smg5	100	82.596	Nannospalax_galili
ENSPVAG00000016748	SMG5	97	57.085	ENSNBRG00000004332	smg5	98	56.942	Neolamprologus_brichardi
ENSPVAG00000016748	SMG5	100	85.728	ENSNLEG00000012439	SMG5	100	85.728	Nomascus_leucogenys
ENSPVAG00000016748	SMG5	100	79.548	ENSMEUG00000012834	SMG5	100	78.368	Notamacropus_eugenii
ENSPVAG00000016748	SMG5	100	84.350	ENSOPRG00000009152	SMG5	100	84.350	Ochotona_princeps
ENSPVAG00000016748	SMG5	100	86.024	ENSODEG00000012237	SMG5	100	86.024	Octodon_degus
ENSPVAG00000016748	SMG5	93	62.528	ENSONIG00000008632	smg5	93	64.336	Oreochromis_niloticus
ENSPVAG00000016748	SMG5	98	86.290	ENSOCUG00000012886	SMG5	100	86.290	Oryctolagus_cuniculus
ENSPVAG00000016748	SMG5	84	48.276	ENSOCUG00000023338	-	94	44.444	Oryctolagus_cuniculus
ENSPVAG00000016748	SMG5	91	65.952	ENSORLG00000016239	smg5	99	55.426	Oryzias_latipes
ENSPVAG00000016748	SMG5	99	58.715	ENSORLG00020013127	smg5	99	59.552	Oryzias_latipes_hni
ENSPVAG00000016748	SMG5	99	58.738	ENSORLG00015019014	smg5	99	59.572	Oryzias_latipes_hsok
ENSPVAG00000016748	SMG5	82	52.620	ENSOMEG00000021330	smg5	76	81.818	Oryzias_melastigma
ENSPVAG00000016748	SMG5	100	84.744	ENSOGAG00000004966	SMG5	100	84.744	Otolemur_garnettii
ENSPVAG00000016748	SMG5	94	50.538	ENSOARG00000011963	-	94	50.538	Ovis_aries
ENSPVAG00000016748	SMG5	100	85.630	ENSOARG00000005778	SMG5	100	85.630	Ovis_aries
ENSPVAG00000016748	SMG5	100	86.024	ENSPPAG00000011996	SMG5	100	86.024	Pan_paniscus
ENSPVAG00000016748	SMG5	98	84.879	ENSPPRG00000011901	SMG5	100	84.879	Panthera_pardus
ENSPVAG00000016748	SMG5	96	78.367	ENSPTIG00000007892	SMG5	98	78.186	Panthera_tigris_altaica
ENSPVAG00000016748	SMG5	100	86.122	ENSPTRG00000049282	-	100	86.122	Pan_troglodytes
ENSPVAG00000016748	SMG5	100	86.122	ENSPTRG00000023925	SMG5	100	86.122	Pan_troglodytes
ENSPVAG00000016748	SMG5	100	86.122	ENSPANG00000011201	SMG5	100	86.122	Papio_anubis
ENSPVAG00000016748	SMG5	99	59.666	ENSPKIG00000009402	smg5	99	60.429	Paramormyrops_kingsleyae
ENSPVAG00000016748	SMG5	98	71.698	ENSPSIG00000015198	SMG5	100	71.599	Pelodiscus_sinensis
ENSPVAG00000016748	SMG5	99	55.032	ENSPMGG00000010465	smg5	99	54.454	Periophthalmus_magnuspinnatus
ENSPVAG00000016748	SMG5	56	40.981	ENSPEMG00000010022	-	95	40.630	Peromyscus_maniculatus_bairdii
ENSPVAG00000016748	SMG5	100	82.711	ENSPEMG00000001819	Smg5	100	82.498	Peromyscus_maniculatus_bairdii
ENSPVAG00000016748	SMG5	99	46.570	ENSPMAG00000000410	smg5	99	46.654	Petromyzon_marinus
ENSPVAG00000016748	SMG5	100	80.845	ENSPCIG00000018938	SMG5	100	79.666	Phascolarctos_cinereus
ENSPVAG00000016748	SMG5	93	63.122	ENSPFOG00000010191	smg5	99	52.778	Poecilia_formosa
ENSPVAG00000016748	SMG5	93	63.122	ENSPLAG00000009332	smg5	93	65.116	Poecilia_latipinna
ENSPVAG00000016748	SMG5	99	59.501	ENSPMEG00000014105	smg5	99	59.426	Poecilia_mexicana
ENSPVAG00000016748	SMG5	93	63.122	ENSPREG00000017713	smg5	93	65.116	Poecilia_reticulata
ENSPVAG00000016748	SMG5	100	86.220	ENSPPYG00000000723	SMG5	100	86.220	Pongo_abelii
ENSPVAG00000016748	SMG5	75	94.475	ENSPCAG00000008412	SMG5	81	94.475	Procavia_capensis
ENSPVAG00000016748	SMG5	100	86.122	ENSPCOG00000004741	SMG5	100	86.122	Propithecus_coquereli
ENSPVAG00000016748	SMG5	99	53.907	ENSPNYG00000013397	smg5	93	64.336	Pundamilia_nyererei
ENSPVAG00000016748	SMG5	99	56.612	ENSPNAG00000028363	smg5	99	56.752	Pygocentrus_nattereri
ENSPVAG00000016748	SMG5	100	82.711	ENSRNOG00000019590	Smg5	100	82.301	Rattus_norvegicus
ENSPVAG00000016748	SMG5	100	86.024	ENSRBIG00000027428	SMG5	100	86.024	Rhinopithecus_bieti
ENSPVAG00000016748	SMG5	100	85.925	ENSRROG00000030035	SMG5	100	85.925	Rhinopithecus_roxellana
ENSPVAG00000016748	SMG5	100	85.925	ENSSBOG00000033339	SMG5	100	85.925	Saimiri_boliviensis_boliviensis
ENSPVAG00000016748	SMG5	71	46.245	ENSSHAG00000009572	-	73	46.245	Sarcophilus_harrisii
ENSPVAG00000016748	SMG5	64	38.922	ENSSHAG00000000935	-	81	39.506	Sarcophilus_harrisii
ENSPVAG00000016748	SMG5	87	39.323	ENSSHAG00000000561	-	87	39.529	Sarcophilus_harrisii
ENSPVAG00000016748	SMG5	98	79.880	ENSSHAG00000014163	SMG5	100	78.478	Sarcophilus_harrisii
ENSPVAG00000016748	SMG5	96	65.046	ENSSFOG00015024175	smg5	93	65.721	Scleropages_formosus
ENSPVAG00000016748	SMG5	99	54.578	ENSSMAG00000013059	smg5	93	65.035	Scophthalmus_maximus
ENSPVAG00000016748	SMG5	92	63.741	ENSSDUG00000007122	smg5	93	64.203	Seriola_dumerili
ENSPVAG00000016748	SMG5	99	54.037	ENSSLDG00000011418	smg5	93	64.802	Seriola_lalandi_dorsalis
ENSPVAG00000016748	SMG5	82	94.949	ENSSARG00000012484	SMG5	91	94.949	Sorex_araneus
ENSPVAG00000016748	SMG5	94	69.200	ENSSPUG00000002260	SMG5	100	68.522	Sphenodon_punctatus
ENSPVAG00000016748	SMG5	99	58.074	ENSSPAG00000014266	smg5	93	65.105	Stegastes_partitus
ENSPVAG00000016748	SMG5	95	73.469	ENSSSCG00000039308	-	96	73.469	Sus_scrofa
ENSPVAG00000016748	SMG5	92	95.960	ENSSSCG00000006490	-	95	95.960	Sus_scrofa
ENSPVAG00000016748	SMG5	94	96.552	ENSTGUG00000003748	-	95	93.000	Taeniopygia_guttata
ENSPVAG00000016748	SMG5	99	58.285	ENSTRUG00000012580	smg5	99	57.707	Takifugu_rubripes
ENSPVAG00000016748	SMG5	99	58.584	ENSTNIG00000010303	smg5	99	58.544	Tetraodon_nigroviridis
ENSPVAG00000016748	SMG5	55	93.333	ENSTBEG00000002777	SMG5	54	93.333	Tupaia_belangeri
ENSPVAG00000016748	SMG5	100	81.398	ENSTTRG00000001401	SMG5	100	81.398	Tursiops_truncatus
ENSPVAG00000016748	SMG5	100	84.154	ENSUAMG00000013721	SMG5	100	84.154	Ursus_americanus
ENSPVAG00000016748	SMG5	98	80.000	ENSUMAG00000018041	SMG5	97	80.000	Ursus_maritimus
ENSPVAG00000016748	SMG5	88	93.750	ENSVPAG00000009446	SMG5	90	93.750	Vicugna_pacos
ENSPVAG00000016748	SMG5	100	84.744	ENSVVUG00000005887	SMG5	100	84.744	Vulpes_vulpes
ENSPVAG00000016748	SMG5	76	64.937	ENSXETG00000033791	SMG5	99	64.313	Xenopus_tropicalis
ENSPVAG00000016748	SMG5	70	69.231	ENSXCOG00000004379	smg5	89	68.649	Xiphophorus_couchianus
ENSPVAG00000016748	SMG5	99	58.567	ENSXMAG00000013499	smg5	99	59.342	Xiphophorus_maculatus