EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRBIG00000013894 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 22880 bases
Position: chrMCGX01012119.1:992309-1015188
Accession: 108515631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000003024	UPF1_Zn_bind	PF09416.10	6.1e-58	1	1
ENSRBIP00000003004	UPF1_Zn_bind	PF09416.10	8e-24	1	1
ENSRBIP00000003004	ResIII	PF04851.15	2.8e-05	1	1
ENSRBIP00000003024	ResIII	PF04851.15	3.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000015753	UPF1-202	3207	-	ENSRBIP00000003024	1068 (aa)	-	A0A2K6JVI2
ENSRBIT00000015671	UPF1-201	3951	XM_017852673	ENSRBIP00000003004	933 (aa)	XP_017708162	A0A2K6JVF5

Gene Model

Click here to download ENSRBIG00000013894's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000013894's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000013894	UPF1	98	99.781	ENSG00000005007	UPF1	95	96.916	Homo_sapiens
ENSRBIG00000013894	UPF1	98	94.645	ENSAPOG00000010916	-	95	91.548	Acanthochromis_polyacanthus
ENSRBIG00000013894	UPF1	98	93.137	ENSAPOG00000023773	upf1	95	90.159	Acanthochromis_polyacanthus
ENSRBIG00000013894	UPF1	98	98.485	ENSAMEG00000011474	UPF1	96	95.729	Ailuropoda_melanoleuca
ENSRBIG00000013894	UPF1	98	92.818	ENSACIG00000019949	upf1	95	90.152	Amphilophus_citrinellus
ENSRBIG00000013894	UPF1	98	94.414	ENSACIG00000010985	-	100	91.699	Amphilophus_citrinellus
ENSRBIG00000013894	UPF1	98	94.645	ENSAOCG00000006352	-	100	89.017	Amphiprion_ocellaris
ENSRBIG00000013894	UPF1	98	92.552	ENSAOCG00000018519	upf1	95	90.159	Amphiprion_ocellaris
ENSRBIG00000013894	UPF1	98	94.645	ENSAPEG00000006292	-	100	89.017	Amphiprion_percula
ENSRBIG00000013894	UPF1	98	92.552	ENSAPEG00000016344	upf1	95	90.159	Amphiprion_percula
ENSRBIG00000013894	UPF1	98	94.645	ENSATEG00000016606	-	95	91.548	Anabas_testudineus
ENSRBIG00000013894	UPF1	98	91.515	ENSATEG00000017867	upf1	95	89.523	Anabas_testudineus
ENSRBIG00000013894	UPF1	98	97.727	ENSAPLG00000009175	UPF1	99	95.814	Anas_platyrhynchos
ENSRBIG00000013894	UPF1	98	97.078	ENSANAG00000024107	UPF1	98	94.717	Aotus_nancymaae
ENSRBIG00000013894	UPF1	98	94.317	ENSACLG00000022630	-	95	91.350	Astatotilapia_calliptera
ENSRBIG00000013894	UPF1	98	92.601	ENSACLG00000007181	upf1	95	89.962	Astatotilapia_calliptera
ENSRBIG00000013894	UPF1	98	94.978	ENSAMXG00000042187	upf1	95	92.403	Astyanax_mexicanus
ENSRBIG00000013894	UPF1	98	98.485	ENSBTAG00000020922	UPF1	95	96.445	Bos_taurus
ENSRBIG00000013894	UPF1	84	54.088	WBGene00004880	smg-2	94	49.080	Caenorhabditis_elegans
ENSRBIG00000013894	UPF1	98	98.593	ENSCJAG00000019627	UPF1	95	96.916	Callithrix_jacchus
ENSRBIG00000013894	UPF1	98	98.485	ENSCAFG00000014578	UPF1	95	96.359	Canis_familiaris
ENSRBIG00000013894	UPF1	98	99.671	ENSCAFG00020012347	UPF1	95	95.331	Canis_lupus_dingo
ENSRBIG00000013894	UPF1	98	99.671	ENSCHIG00000011018	UPF1	95	96.449	Capra_hircus
ENSRBIG00000013894	UPF1	98	98.160	ENSTSYG00000008877	UPF1	99	96.348	Carlito_syrichta
ENSRBIG00000013894	UPF1	98	97.727	ENSCAPG00000005758	UPF1	95	96.388	Cavia_aperea
ENSRBIG00000013894	UPF1	98	97.727	ENSCPOG00000025463	UPF1	94	96.374	Cavia_porcellus
ENSRBIG00000013894	UPF1	98	99.781	ENSCCAG00000032175	UPF1	95	96.916	Cebus_capucinus
ENSRBIG00000013894	UPF1	98	98.593	ENSCATG00000040306	UPF1	99	95.903	Cercocebus_atys
ENSRBIG00000013894	UPF1	98	98.160	ENSCLAG00000004037	UPF1	100	97.243	Chinchilla_lanigera
ENSRBIG00000013894	UPF1	98	99.781	ENSCSAG00000005276	UPF1	95	95.701	Chlorocebus_sabaeus
ENSRBIG00000013894	UPF1	98	98.362	ENSCPBG00000012513	UPF1	95	94.216	Chrysemys_picta_bellii
ENSRBIG00000013894	UPF1	71	83.934	ENSCING00000021399	-	91	79.923	Ciona_intestinalis
ENSRBIG00000013894	UPF1	98	74.351	ENSCSAVG00000006533	-	94	71.618	Ciona_savignyi
ENSRBIG00000013894	UPF1	98	98.593	ENSCANG00000029819	UPF1	100	97.590	Colobus_angolensis_palliatus
ENSRBIG00000013894	UPF1	98	98.795	ENSCGRG00001021067	Upf1	95	94.860	Cricetulus_griseus_chok1gshd
ENSRBIG00000013894	UPF1	98	97.619	ENSCGRG00000013480	Upf1	99	95.783	Cricetulus_griseus_crigri
ENSRBIG00000013894	UPF1	98	94.639	ENSCSEG00000016159	-	95	91.445	Cynoglossus_semilaevis
ENSRBIG00000013894	UPF1	98	87.322	ENSCSEG00000017239	upf1	94	85.033	Cynoglossus_semilaevis
ENSRBIG00000013894	UPF1	98	94.536	ENSCVAG00000010561	upf1	95	91.263	Cyprinodon_variegatus
ENSRBIG00000013894	UPF1	98	94.869	ENSDARG00000016302	upf1	95	92.213	Danio_rerio
ENSRBIG00000013894	UPF1	98	95.027	ENSDORG00000009984	Upf1	95	94.402	Dipodomys_ordii
ENSRBIG00000013894	UPF1	80	75.529	FBgn0030354	Upf1	80	67.798	Drosophila_melanogaster
ENSRBIG00000013894	UPF1	51	83.662	ENSEBUG00000010069	upf1	89	84.364	Eptatretus_burgeri
ENSRBIG00000013894	UPF1	98	99.562	ENSEASG00005006549	UPF1	96	94.625	Equus_asinus_asinus
ENSRBIG00000013894	UPF1	98	99.562	ENSECAG00000010639	UPF1	96	94.625	Equus_caballus
ENSRBIG00000013894	UPF1	98	93.601	ENSELUG00000012916	-	95	90.660	Esox_lucius
ENSRBIG00000013894	UPF1	98	91.857	ENSELUG00000020917	upf1	95	89.414	Esox_lucius
ENSRBIG00000013894	UPF1	98	98.485	ENSFCAG00000009757	UPF1	95	96.265	Felis_catus
ENSRBIG00000013894	UPF1	98	98.687	ENSFALG00000009312	UPF1	96	94.976	Ficedula_albicollis
ENSRBIG00000013894	UPF1	98	98.052	ENSFDAG00000014816	UPF1	100	97.148	Fukomys_damarensis
ENSRBIG00000013894	UPF1	98	90.476	ENSFHEG00000006428	upf1	94	87.382	Fundulus_heteroclitus
ENSRBIG00000013894	UPF1	88	96.310	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSRBIG00000013894	UPF1	98	92.765	ENSGMOG00000007541	upf1	95	91.643	Gadus_morhua
ENSRBIG00000013894	UPF1	98	98.905	ENSGALG00000003220	UPF1	93	95.528	Gallus_gallus
ENSRBIG00000013894	UPF1	74	95.389	ENSGAFG00000015443	-	88	93.026	Gambusia_affinis
ENSRBIG00000013894	UPF1	98	94.420	ENSGAFG00000004831	upf1	95	91.160	Gambusia_affinis
ENSRBIG00000013894	UPF1	98	98.795	ENSGAGG00000022217	UPF1	96	94.398	Gopherus_agassizii
ENSRBIG00000013894	UPF1	98	99.781	ENSGGOG00000002608	UPF1	99	96.581	Gorilla_gorilla
ENSRBIG00000013894	UPF1	86	87.430	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSRBIG00000013894	UPF1	83	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSRBIG00000013894	UPF1	98	97.835	ENSHGLG00000010900	UPF1	95	96.075	Heterocephalus_glaber_female
ENSRBIG00000013894	UPF1	98	95.887	ENSHGLG00100005904	UPF1	97	95.252	Heterocephalus_glaber_male
ENSRBIG00000013894	UPF1	98	93.545	ENSHCOG00000008918	upf1	100	90.431	Hippocampus_comes
ENSRBIG00000013894	UPF1	98	95.306	ENSIPUG00000005108	UPF1	95	92.783	Ictalurus_punctatus
ENSRBIG00000013894	UPF1	98	99.343	ENSSTOG00000009196	UPF1	95	96.542	Ictidomys_tridecemlineatus
ENSRBIG00000013894	UPF1	98	97.403	ENSJJAG00000023151	Upf1	95	95.794	Jaculus_jaculus
ENSRBIG00000013894	UPF1	98	94.754	ENSKMAG00000004962	upf1	95	91.548	Kryptolebias_marmoratus
ENSRBIG00000013894	UPF1	98	91.173	ENSLBEG00000014862	upf1	95	89.503	Labrus_bergylta
ENSRBIG00000013894	UPF1	98	94.432	ENSLBEG00000027848	-	95	91.358	Labrus_bergylta
ENSRBIG00000013894	UPF1	75	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSRBIG00000013894	UPF1	98	97.155	ENSLOCG00000002072	upf1	95	93.916	Lepisosteus_oculatus
ENSRBIG00000013894	UPF1	98	97.835	ENSLAFG00000014963	UPF1	96	95.088	Loxodonta_africana
ENSRBIG00000013894	UPF1	98	98.593	ENSMFAG00000037748	UPF1	95	96.916	Macaca_fascicularis
ENSRBIG00000013894	UPF1	98	98.593	ENSMMUG00000023286	UPF1	95	96.916	Macaca_mulatta
ENSRBIG00000013894	UPF1	98	98.593	ENSMNEG00000000046	UPF1	95	96.916	Macaca_nemestrina
ENSRBIG00000013894	UPF1	98	98.593	ENSMLEG00000028404	UPF1	100	97.624	Mandrillus_leucophaeus
ENSRBIG00000013894	UPF1	98	93.668	ENSMAMG00000006231	-	95	91.263	Mastacembelus_armatus
ENSRBIG00000013894	UPF1	98	91.407	ENSMAMG00000006229	upf1	95	89.523	Mastacembelus_armatus
ENSRBIG00000013894	UPF1	98	94.317	ENSMZEG00005016386	-	95	91.350	Maylandia_zebra
ENSRBIG00000013894	UPF1	98	91.309	ENSMZEG00005003489	upf1	95	89.756	Maylandia_zebra
ENSRBIG00000013894	UPF1	98	97.189	ENSMGAG00000004745	UPF1	100	95.342	Meleagris_gallopavo
ENSRBIG00000013894	UPF1	98	97.619	ENSMAUG00000011398	Upf1	95	96.673	Mesocricetus_auratus
ENSRBIG00000013894	UPF1	98	99.452	ENSMICG00000001659	UPF1	95	95.607	Microcebus_murinus
ENSRBIG00000013894	UPF1	98	97.619	ENSMOCG00000005699	Upf1	96	95.353	Microtus_ochrogaster
ENSRBIG00000013894	UPF1	98	92.662	ENSMMOG00000007881	upf1	94	90.181	Mola_mola
ENSRBIG00000013894	UPF1	98	92.131	ENSMMOG00000007537	-	99	89.269	Mola_mola
ENSRBIG00000013894	UPF1	98	98.905	ENSMODG00000003689	UPF1	95	95.705	Monodelphis_domestica
ENSRBIG00000013894	UPF1	98	93.145	ENSMALG00000018100	-	95	90.265	Monopterus_albus
ENSRBIG00000013894	UPF1	98	92.552	ENSMALG00000000144	upf1	95	89.819	Monopterus_albus
ENSRBIG00000013894	UPF1	98	98.686	MGP_CAROLIEiJ_G0031142	Upf1	95	95.794	Mus_caroli
ENSRBIG00000013894	UPF1	98	98.686	ENSMUSG00000058301	Upf1	95	95.794	Mus_musculus
ENSRBIG00000013894	UPF1	98	98.686	MGP_PahariEiJ_G0021607	Upf1	95	95.794	Mus_pahari
ENSRBIG00000013894	UPF1	98	98.686	MGP_SPRETEiJ_G0032260	Upf1	95	95.794	Mus_spretus
ENSRBIG00000013894	UPF1	98	99.671	ENSMPUG00000015516	UPF1	95	95.331	Mustela_putorius_furo
ENSRBIG00000013894	UPF1	98	99.452	ENSMLUG00000012122	UPF1	95	94.972	Myotis_lucifugus
ENSRBIG00000013894	UPF1	98	97.403	ENSNGAG00000024107	Upf1	95	95.794	Nannospalax_galili
ENSRBIG00000013894	UPF1	98	93.122	ENSNBRG00000022069	-	100	90.481	Neolamprologus_brichardi
ENSRBIG00000013894	UPF1	98	90.533	ENSNBRG00000000670	upf1	95	88.163	Neolamprologus_brichardi
ENSRBIG00000013894	UPF1	93	96.355	ENSNLEG00000006062	UPF1	100	91.825	Nomascus_leucogenys
ENSRBIG00000013894	UPF1	80	94.314	ENSMEUG00000014146	-	77	94.314	Notamacropus_eugenii
ENSRBIG00000013894	UPF1	98	90.471	ENSOPRG00000014018	UPF1	100	88.213	Ochotona_princeps
ENSRBIG00000013894	UPF1	98	98.052	ENSODEG00000012426	UPF1	96	96.348	Octodon_degus
ENSRBIG00000013894	UPF1	98	91.631	ENSONIG00000010452	upf1	95	90.038	Oreochromis_niloticus
ENSRBIG00000013894	UPF1	98	94.426	ENSONIG00000012729	-	95	91.445	Oreochromis_niloticus
ENSRBIG00000013894	UPF1	98	97.408	ENSOANG00000004568	UPF1	95	95.247	Ornithorhynchus_anatinus
ENSRBIG00000013894	UPF1	98	94.754	ENSORLG00000008453	upf1	95	91.168	Oryzias_latipes
ENSRBIG00000013894	UPF1	98	94.754	ENSORLG00020014758	upf1	95	91.168	Oryzias_latipes_hni
ENSRBIG00000013894	UPF1	98	94.754	ENSORLG00015010165	upf1	100	87.283	Oryzias_latipes_hsok
ENSRBIG00000013894	UPF1	98	94.863	ENSOMEG00000003665	upf1	95	91.263	Oryzias_melastigma
ENSRBIG00000013894	UPF1	98	99.671	ENSOGAG00000012866	UPF1	95	95.794	Otolemur_garnettii
ENSRBIG00000013894	UPF1	94	97.971	ENSOARG00000010739	UPF1	93	96.943	Ovis_aries
ENSRBIG00000013894	UPF1	100	97.232	ENSPPAG00000043884	UPF1	99	97.232	Pan_paniscus
ENSRBIG00000013894	UPF1	98	98.485	ENSPPRG00000023470	UPF1	95	96.265	Panthera_pardus
ENSRBIG00000013894	UPF1	98	97.262	ENSPTIG00000010159	UPF1	99	94.196	Panthera_tigris_altaica
ENSRBIG00000013894	UPF1	98	98.593	ENSPTRG00000010721	UPF1	95	96.916	Pan_troglodytes
ENSRBIG00000013894	UPF1	98	98.593	ENSPANG00000008847	UPF1	95	96.916	Papio_anubis
ENSRBIG00000013894	UPF1	87	96.825	ENSPKIG00000006069	upf1	94	91.001	Paramormyrops_kingsleyae
ENSRBIG00000013894	UPF1	82	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSRBIG00000013894	UPF1	98	91.503	ENSPMGG00000017327	upf1	95	88.269	Periophthalmus_magnuspinnatus
ENSRBIG00000013894	UPF1	98	97.619	ENSPEMG00000001085	Upf1	95	95.888	Peromyscus_maniculatus_bairdii
ENSRBIG00000013894	UPF1	98	89.434	ENSPMAG00000001206	upf1	94	86.882	Petromyzon_marinus
ENSRBIG00000013894	UPF1	98	98.905	ENSPCIG00000006156	UPF1	95	94.678	Phascolarctos_cinereus
ENSRBIG00000013894	UPF1	98	91.667	ENSPLAG00000018155	-	95	88.324	Poecilia_latipinna
ENSRBIG00000013894	UPF1	98	94.530	ENSPLAG00000016232	-	95	91.255	Poecilia_latipinna
ENSRBIG00000013894	UPF1	98	94.426	ENSPMEG00000016319	-	95	91.350	Poecilia_mexicana
ENSRBIG00000013894	UPF1	98	92.358	ENSPMEG00000011443	-	95	88.899	Poecilia_mexicana
ENSRBIG00000013894	UPF1	98	92.208	ENSPREG00000009940	upf1	94	88.889	Poecilia_reticulata
ENSRBIG00000013894	UPF1	98	94.311	ENSPREG00000011247	-	95	91.065	Poecilia_reticulata
ENSRBIG00000013894	UPF1	99	91.682	ENSPPYG00000009752	UPF1	95	91.682	Pongo_abelii
ENSRBIG00000013894	UPF1	69	100.000	ENSPCAG00000012962	UPF1	63	100.000	Procavia_capensis
ENSRBIG00000013894	UPF1	98	98.377	ENSPCOG00000023813	UPF1	95	96.355	Propithecus_coquereli
ENSRBIG00000013894	UPF1	64	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSRBIG00000013894	UPF1	98	94.317	ENSPNYG00000016731	-	95	91.350	Pundamilia_nyererei
ENSRBIG00000013894	UPF1	98	91.309	ENSPNYG00000003694	upf1	95	89.756	Pundamilia_nyererei
ENSRBIG00000013894	UPF1	98	95.087	ENSPNAG00000025614	upf1	95	92.403	Pygocentrus_nattereri
ENSRBIG00000013894	UPF1	98	98.686	ENSRNOG00000020134	Upf1	95	95.794	Rattus_norvegicus
ENSRBIG00000013894	UPF1	100	100.000	ENSRROG00000040935	UPF1	100	100.000	Rhinopithecus_roxellana
ENSRBIG00000013894	UPF1	76	57.283	YMR080C	NAM7	80	56.407	Saccharomyces_cerevisiae
ENSRBIG00000013894	UPF1	98	98.593	ENSSBOG00000023632	UPF1	99	96.100	Saimiri_boliviensis_boliviensis
ENSRBIG00000013894	UPF1	98	97.516	ENSSHAG00000010499	UPF1	100	96.486	Sarcophilus_harrisii
ENSRBIG00000013894	UPF1	98	97.046	ENSSFOG00015021095	upf1	99	93.821	Scleropages_formosus
ENSRBIG00000013894	UPF1	98	94.432	ENSSMAG00000021018	-	95	91.548	Scophthalmus_maximus
ENSRBIG00000013894	UPF1	98	91.066	ENSSMAG00000005055	upf1	95	88.764	Scophthalmus_maximus
ENSRBIG00000013894	UPF1	98	91.515	ENSSDUG00000013320	upf1	95	89.710	Seriola_dumerili
ENSRBIG00000013894	UPF1	98	94.651	ENSSDUG00000009629	-	95	91.738	Seriola_dumerili
ENSRBIG00000013894	UPF1	98	92.508	ENSSLDG00000020868	upf1	95	90.009	Seriola_lalandi_dorsalis
ENSRBIG00000013894	UPF1	98	94.651	ENSSLDG00000006878	-	95	91.738	Seriola_lalandi_dorsalis
ENSRBIG00000013894	UPF1	98	98.795	ENSSPUG00000010538	UPF1	94	95.338	Sphenodon_punctatus
ENSRBIG00000013894	UPF1	98	93.764	ENSSPAG00000000003	upf1	95	91.242	Stegastes_partitus
ENSRBIG00000013894	UPF1	98	94.858	ENSSPAG00000011521	-	95	91.635	Stegastes_partitus
ENSRBIG00000013894	UPF1	98	99.562	ENSSSCG00000039301	UPF1	99	96.289	Sus_scrofa
ENSRBIG00000013894	UPF1	79	88.528	ENSTGUG00000001057	UPF1	90	92.574	Taeniopygia_guttata
ENSRBIG00000013894	UPF1	98	92.990	ENSTRUG00000000150	upf1	95	89.534	Takifugu_rubripes
ENSRBIG00000013894	UPF1	98	93.545	ENSTRUG00000005131	-	95	90.494	Takifugu_rubripes
ENSRBIG00000013894	UPF1	97	99.229	ENSTTRG00000011544	UPF1	93	92.483	Tursiops_truncatus
ENSRBIG00000013894	UPF1	98	99.671	ENSUAMG00000007093	UPF1	95	95.238	Ursus_americanus
ENSRBIG00000013894	UPF1	98	99.671	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSRBIG00000013894	UPF1	98	99.671	ENSVVUG00000007797	UPF1	95	95.331	Vulpes_vulpes
ENSRBIG00000013894	UPF1	98	81.681	ENSXETG00000013602	upf1	93	81.232	Xenopus_tropicalis
ENSRBIG00000013894	UPF1	98	94.420	ENSXCOG00000005764	-	100	91.459	Xiphophorus_couchianus
ENSRBIG00000013894	UPF1	94	92.132	ENSXCOG00000015275	-	91	88.571	Xiphophorus_couchianus
ENSRBIG00000013894	UPF1	98	92.232	ENSXMAG00000001703	-	95	88.783	Xiphophorus_maculatus
ENSRBIG00000013894	UPF1	98	94.317	ENSXMAG00000002540	-	95	91.160	Xiphophorus_maculatus