EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRBIG00000027428 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 38919 bases
Position: chrMCGX01012050.1:922879-961797
Accession: 108515513
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000007138	EST1	PF10374.9	1.1e-23	1	1
ENSRBIP00000007143	EST1	PF10374.9	1.1e-23	1	1
ENSRBIP00000007138	EST1_DNA_bind	PF10373.9	4.8e-40	1	2
ENSRBIP00000007138	EST1_DNA_bind	PF10373.9	4.8e-40	2	2
ENSRBIP00000007143	EST1_DNA_bind	PF10373.9	4.8e-40	1	2
ENSRBIP00000007143	EST1_DNA_bind	PF10373.9	4.8e-40	2	2
ENSRBIP00000007138	PIN_4	PF13638.6	3.1e-05	1	1
ENSRBIP00000007143	PIN_4	PF13638.6	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000030695	SMG5-201	4577	XM_017852439	ENSRBIP00000007138	1016 (aa)	XP_017707928	A0A2K6K799
ENSRBIT00000030701	SMG5-202	3088	XM_017852441	ENSRBIP00000007143	1016 (aa)	XP_017707930	A0A2K6K799

Gene Model

Click here to download ENSRBIG00000027428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000027428's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000027428	SMG5	100	99.016	ENSG00000198952	SMG5	100	99.016	Homo_sapiens
ENSRBIG00000027428	SMG5	99	67.353	ENSAPOG00000019690	smg5	99	66.601	Acanthochromis_polyacanthus
ENSRBIG00000027428	SMG5	98	92.649	ENSAMEG00000014458	SMG5	100	92.649	Ailuropoda_melanoleuca
ENSRBIG00000027428	SMG5	99	64.914	ENSACIG00000001353	smg5	99	66.859	Amphilophus_citrinellus
ENSRBIG00000027428	SMG5	98	64.729	ENSAOCG00000019483	smg5	93	66.598	Amphiprion_ocellaris
ENSRBIG00000027428	SMG5	98	66.006	ENSAPEG00000022949	smg5	98	66.335	Amphiprion_percula
ENSRBIG00000027428	SMG5	99	65.964	ENSATEG00000005348	smg5	99	67.410	Anabas_testudineus
ENSRBIG00000027428	SMG5	98	78.634	ENSAPLG00000010263	SMG5	100	78.341	Anas_platyrhynchos
ENSRBIG00000027428	SMG5	100	98.031	ENSANAG00000032899	SMG5	100	98.031	Aotus_nancymaae
ENSRBIG00000027428	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.314	Astatotilapia_calliptera
ENSRBIG00000027428	SMG5	100	95.866	ENSBTAG00000009435	SMG5	100	95.866	Bos_taurus
ENSRBIG00000027428	SMG5	99	44.101	ENSBTAG00000021747	-	99	43.478	Bos_taurus
ENSRBIG00000027428	SMG5	100	98.031	ENSCJAG00000005684	SMG5	100	98.031	Callithrix_jacchus
ENSRBIG00000027428	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	93.898	Canis_familiaris
ENSRBIG00000027428	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	93.898	Canis_lupus_dingo
ENSRBIG00000027428	SMG5	99	44.807	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSRBIG00000027428	SMG5	100	95.768	ENSCHIG00000007709	SMG5	100	95.768	Capra_hircus
ENSRBIG00000027428	SMG5	100	96.952	ENSTSYG00000004099	SMG5	100	96.952	Carlito_syrichta
ENSRBIG00000027428	SMG5	97	74.949	ENSCAPG00000003631	SMG5	100	75.493	Cavia_aperea
ENSRBIG00000027428	SMG5	100	96.169	ENSCPOG00000015696	SMG5	100	95.874	Cavia_porcellus
ENSRBIG00000027428	SMG5	100	98.031	ENSCCAG00000027409	SMG5	100	98.031	Cebus_capucinus
ENSRBIG00000027428	SMG5	100	99.705	ENSCATG00000030539	SMG5	100	99.705	Cercocebus_atys
ENSRBIG00000027428	SMG5	100	96.464	ENSCLAG00000003983	SMG5	100	96.464	Chinchilla_lanigera
ENSRBIG00000027428	SMG5	100	99.606	ENSCSAG00000002120	SMG5	100	99.606	Chlorocebus_sabaeus
ENSRBIG00000027428	SMG5	54	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSRBIG00000027428	SMG5	94	78.398	ENSCPBG00000025848	SMG5	100	78.093	Chrysemys_picta_bellii
ENSRBIG00000027428	SMG5	93	35.191	ENSCING00000008706	-	99	35.282	Ciona_intestinalis
ENSRBIG00000027428	SMG5	100	95.669	ENSCANG00000029208	SMG5	100	95.669	Colobus_angolensis_palliatus
ENSRBIG00000027428	SMG5	100	92.829	ENSCGRG00001006336	Smg5	100	92.436	Cricetulus_griseus_chok1gshd
ENSRBIG00000027428	SMG5	98	92.857	ENSCGRG00000005111	Smg5	100	92.447	Cricetulus_griseus_crigri
ENSRBIG00000027428	SMG5	99	65.598	ENSCSEG00000014220	smg5	92	78.251	Cynoglossus_semilaevis
ENSRBIG00000027428	SMG5	99	60.819	ENSCVAG00000000529	smg5	99	61.710	Cyprinodon_variegatus
ENSRBIG00000027428	SMG5	92	36.720	ENSDNOG00000039862	-	100	35.232	Dasypus_novemcinctus
ENSRBIG00000027428	SMG5	100	91.535	ENSDNOG00000000051	SMG5	100	91.535	Dasypus_novemcinctus
ENSRBIG00000027428	SMG5	100	93.615	ENSDORG00000010382	Smg5	100	93.418	Dipodomys_ordii
ENSRBIG00000027428	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSRBIG00000027428	SMG5	82	97.087	ENSETEG00000010336	SMG5	83	97.087	Echinops_telfairi
ENSRBIG00000027428	SMG5	90	46.277	ENSEBUG00000003739	smg5	98	46.000	Eptatretus_burgeri
ENSRBIG00000027428	SMG5	100	96.752	ENSEASG00005019122	SMG5	100	96.752	Equus_asinus_asinus
ENSRBIG00000027428	SMG5	100	96.752	ENSECAG00000001389	SMG5	100	96.752	Equus_caballus
ENSRBIG00000027428	SMG5	72	97.983	ENSEEUG00000012690	SMG5	73	97.983	Erinaceus_europaeus
ENSRBIG00000027428	SMG5	99	65.159	ENSELUG00000012585	smg5	99	65.063	Esox_lucius
ENSRBIG00000027428	SMG5	100	93.996	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSRBIG00000027428	SMG5	58	81.803	ENSFALG00000001166	-	99	81.910	Ficedula_albicollis
ENSRBIG00000027428	SMG5	98	93.051	ENSFDAG00000017388	SMG5	100	92.951	Fukomys_damarensis
ENSRBIG00000027428	SMG5	97	62.361	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSRBIG00000027428	SMG5	99	61.302	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSRBIG00000027428	SMG5	99	77.724	ENSGALG00000029918	-	100	77.429	Gallus_gallus
ENSRBIG00000027428	SMG5	100	79.202	ENSGAGG00000016131	SMG5	100	79.012	Gopherus_agassizii
ENSRBIG00000027428	SMG5	100	99.016	ENSGGOG00000010932	SMG5	100	99.016	Gorilla_gorilla
ENSRBIG00000027428	SMG5	99	64.211	ENSHBUG00000008654	smg5	99	65.366	Haplochromis_burtoni
ENSRBIG00000027428	SMG5	100	92.829	ENSHGLG00000019152	SMG5	100	93.026	Heterocephalus_glaber_female
ENSRBIG00000027428	SMG5	90	92.881	ENSHGLG00100015948	SMG5	99	93.100	Heterocephalus_glaber_male
ENSRBIG00000027428	SMG5	86	73.350	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSRBIG00000027428	SMG5	99	61.469	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSRBIG00000027428	SMG5	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSRBIG00000027428	SMG5	100	92.836	ENSJJAG00000022763	Smg5	100	92.640	Jaculus_jaculus
ENSRBIG00000027428	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.422	Kryptolebias_marmoratus
ENSRBIG00000027428	SMG5	99	66.506	ENSLBEG00000002145	smg5	99	66.441	Labrus_bergylta
ENSRBIG00000027428	SMG5	100	64.957	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSRBIG00000027428	SMG5	96	79.108	ENSLOCG00000008380	smg5	92	79.147	Lepisosteus_oculatus
ENSRBIG00000027428	SMG5	100	94.291	ENSLAFG00000006241	SMG5	100	94.291	Loxodonta_africana
ENSRBIG00000027428	SMG5	100	99.606	ENSMFAG00000045357	SMG5	100	99.606	Macaca_fascicularis
ENSRBIG00000027428	SMG5	100	99.508	ENSMMUG00000000090	SMG5	100	99.508	Macaca_mulatta
ENSRBIG00000027428	SMG5	100	99.508	ENSMNEG00000044425	SMG5	100	99.508	Macaca_nemestrina
ENSRBIG00000027428	SMG5	100	93.333	ENSMLEG00000041192	SMG5	100	93.333	Mandrillus_leucophaeus
ENSRBIG00000027428	SMG5	99	61.195	ENSMAMG00000010683	smg5	58	56.585	Mastacembelus_armatus
ENSRBIG00000027428	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.276	Maylandia_zebra
ENSRBIG00000027428	SMG5	99	63.740	ENSMZEG00005015815	smg5	99	64.695	Maylandia_zebra
ENSRBIG00000027428	SMG5	55	45.184	ENSMAUG00000000043	-	96	44.444	Mesocricetus_auratus
ENSRBIG00000027428	SMG5	100	91.945	ENSMAUG00000010381	Smg5	100	91.749	Mesocricetus_auratus
ENSRBIG00000027428	SMG5	100	97.146	ENSMICG00000002257	SMG5	100	97.146	Microcebus_murinus
ENSRBIG00000027428	SMG5	100	91.765	ENSMOCG00000016590	Smg5	100	91.471	Microtus_ochrogaster
ENSRBIG00000027428	SMG5	99	59.305	ENSMMOG00000017199	smg5	99	59.910	Mola_mola
ENSRBIG00000027428	SMG5	80	38.642	ENSMODG00000004735	-	86	40.000	Monodelphis_domestica
ENSRBIG00000027428	SMG5	97	34.791	ENSMODG00000004511	-	99	33.996	Monodelphis_domestica
ENSRBIG00000027428	SMG5	93	37.073	ENSMODG00000004532	-	83	37.688	Monodelphis_domestica
ENSRBIG00000027428	SMG5	87	89.752	ENSMODG00000016901	SMG5	98	90.203	Monodelphis_domestica
ENSRBIG00000027428	SMG5	78	37.531	ENSMODG00000010675	-	84	37.766	Monodelphis_domestica
ENSRBIG00000027428	SMG5	99	60.765	ENSMALG00000010375	smg5	99	59.644	Monopterus_albus
ENSRBIG00000027428	SMG5	100	92.436	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSRBIG00000027428	SMG5	100	92.633	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSRBIG00000027428	SMG5	100	92.247	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSRBIG00000027428	SMG5	100	92.436	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSRBIG00000027428	SMG5	94	92.947	ENSMPUG00000004546	SMG5	100	92.316	Mustela_putorius_furo
ENSRBIG00000027428	SMG5	100	94.814	ENSMLUG00000008518	SMG5	100	93.933	Myotis_lucifugus
ENSRBIG00000027428	SMG5	98	44.478	ENSNGAG00000012101	-	98	44.687	Nannospalax_galili
ENSRBIG00000027428	SMG5	100	93.904	ENSNGAG00000020706	Smg5	100	93.609	Nannospalax_galili
ENSRBIG00000027428	SMG5	97	63.163	ENSNBRG00000004332	smg5	98	64.293	Neolamprologus_brichardi
ENSRBIG00000027428	SMG5	100	98.917	ENSNLEG00000012439	SMG5	100	98.917	Nomascus_leucogenys
ENSRBIG00000027428	SMG5	100	87.807	ENSMEUG00000012834	SMG5	100	86.922	Notamacropus_eugenii
ENSRBIG00000027428	SMG5	100	94.291	ENSOPRG00000009152	SMG5	100	94.291	Ochotona_princeps
ENSRBIG00000027428	SMG5	100	95.669	ENSODEG00000012237	SMG5	100	95.669	Octodon_degus
ENSRBIG00000027428	SMG5	50	59.598	ENSONIG00000008632	smg5	55	55.592	Oreochromis_niloticus
ENSRBIG00000027428	SMG5	89	40.700	ENSOCUG00000023338	-	99	40.591	Oryctolagus_cuniculus
ENSRBIG00000027428	SMG5	98	95.262	ENSOCUG00000012886	SMG5	100	95.262	Oryctolagus_cuniculus
ENSRBIG00000027428	SMG5	99	64.522	ENSORLG00020013127	smg5	99	66.018	Oryzias_latipes_hni
ENSRBIG00000027428	SMG5	99	64.237	ENSORLG00015019014	smg5	99	65.889	Oryzias_latipes_hsok
ENSRBIG00000027428	SMG5	100	95.177	ENSOGAG00000004966	SMG5	100	95.177	Otolemur_garnettii
ENSRBIG00000027428	SMG5	100	95.866	ENSOARG00000005778	SMG5	100	95.866	Ovis_aries
ENSRBIG00000027428	SMG5	99	44.477	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSRBIG00000027428	SMG5	100	98.720	ENSPPAG00000011996	SMG5	100	98.720	Pan_paniscus
ENSRBIG00000027428	SMG5	98	93.851	ENSPPRG00000011901	SMG5	100	93.145	Panthera_pardus
ENSRBIG00000027428	SMG5	99	85.657	ENSPTIG00000007892	SMG5	98	85.729	Panthera_tigris_altaica
ENSRBIG00000027428	SMG5	100	98.917	ENSPTRG00000049282	-	100	98.917	Pan_troglodytes
ENSRBIG00000027428	SMG5	100	98.917	ENSPTRG00000023925	SMG5	100	98.917	Pan_troglodytes
ENSRBIG00000027428	SMG5	100	99.705	ENSPANG00000011201	SMG5	100	99.705	Papio_anubis
ENSRBIG00000027428	SMG5	99	65.507	ENSPKIG00000009402	smg5	99	65.759	Paramormyrops_kingsleyae
ENSRBIG00000027428	SMG5	98	80.536	ENSPSIG00000015198	SMG5	100	80.178	Pelodiscus_sinensis
ENSRBIG00000027428	SMG5	99	60.514	ENSPMGG00000010465	smg5	99	60.906	Periophthalmus_magnuspinnatus
ENSRBIG00000027428	SMG5	100	93.124	ENSPEMG00000001819	Smg5	100	92.731	Peromyscus_maniculatus_bairdii
ENSRBIG00000027428	SMG5	56	46.060	ENSPEMG00000010022	-	95	44.845	Peromyscus_maniculatus_bairdii
ENSRBIG00000027428	SMG5	99	49.517	ENSPMAG00000000410	smg5	100	49.477	Petromyzon_marinus
ENSRBIG00000027428	SMG5	100	89.293	ENSPCIG00000018938	SMG5	100	89.686	Phascolarctos_cinereus
ENSRBIG00000027428	SMG5	50	60.221	ENSPFOG00000010191	smg5	99	62.266	Poecilia_formosa
ENSRBIG00000027428	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	61.998	Poecilia_latipinna
ENSRBIG00000027428	SMG5	99	65.514	ENSPMEG00000014105	smg5	99	65.322	Poecilia_mexicana
ENSRBIG00000027428	SMG5	93	69.425	ENSPREG00000017713	smg5	99	61.909	Poecilia_reticulata
ENSRBIG00000027428	SMG5	100	99.213	ENSPPYG00000000723	SMG5	100	99.213	Pongo_abelii
ENSRBIG00000027428	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSRBIG00000027428	SMG5	100	97.244	ENSPCOG00000004741	SMG5	100	97.244	Propithecus_coquereli
ENSRBIG00000027428	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSRBIG00000027428	SMG5	93	63.883	ENSPNYG00000013397	smg5	99	61.027	Pundamilia_nyererei
ENSRBIG00000027428	SMG5	100	92.633	ENSRNOG00000019590	Smg5	100	92.240	Rattus_norvegicus
ENSRBIG00000027428	SMG5	100	99.902	ENSRROG00000030035	SMG5	100	99.902	Rhinopithecus_roxellana
ENSRBIG00000027428	SMG5	100	98.031	ENSSBOG00000033339	SMG5	100	98.031	Saimiri_boliviensis_boliviensis
ENSRBIG00000027428	SMG5	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSRBIG00000027428	SMG5	99	34.102	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSRBIG00000027428	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSRBIG00000027428	SMG5	98	88.889	ENSSHAG00000014163	SMG5	100	89.289	Sarcophilus_harrisii
ENSRBIG00000027428	SMG5	99	66.245	ENSSFOG00015024175	smg5	99	66.504	Scleropages_formosus
ENSRBIG00000027428	SMG5	99	60.816	ENSSMAG00000013059	smg5	99	62.389	Scophthalmus_maximus
ENSRBIG00000027428	SMG5	50	60.326	ENSSDUG00000007122	smg5	92	77.336	Seriola_dumerili
ENSRBIG00000027428	SMG5	99	60.386	ENSSLDG00000011418	smg5	92	78.066	Seriola_lalandi_dorsalis
ENSRBIG00000027428	SMG5	90	81.025	ENSSARG00000012484	SMG5	100	81.025	Sorex_araneus
ENSRBIG00000027428	SMG5	94	77.250	ENSSPUG00000002260	SMG5	100	75.960	Sphenodon_punctatus
ENSRBIG00000027428	SMG5	91	77.049	ENSSPAG00000014266	smg5	99	65.351	Stegastes_partitus
ENSRBIG00000027428	SMG5	99	74.877	ENSSSCG00000039308	-	100	75.074	Sus_scrofa
ENSRBIG00000027428	SMG5	100	96.850	ENSSSCG00000006490	-	100	96.850	Sus_scrofa
ENSRBIG00000027428	SMG5	99	80.317	ENSTGUG00000003748	-	100	80.078	Taeniopygia_guttata
ENSRBIG00000027428	SMG5	99	63.775	ENSTRUG00000012580	smg5	99	64.382	Takifugu_rubripes
ENSRBIG00000027428	SMG5	99	65.213	ENSTNIG00000010303	smg5	99	64.985	Tetraodon_nigroviridis
ENSRBIG00000027428	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSRBIG00000027428	SMG5	100	91.535	ENSTTRG00000001401	SMG5	100	91.535	Tursiops_truncatus
ENSRBIG00000027428	SMG5	100	93.504	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSRBIG00000027428	SMG5	98	89.045	ENSUMAG00000018041	SMG5	97	88.442	Ursus_maritimus
ENSRBIG00000027428	SMG5	98	86.680	ENSVPAG00000009446	SMG5	99	86.680	Vicugna_pacos
ENSRBIG00000027428	SMG5	100	94.390	ENSVVUG00000005887	SMG5	100	93.799	Vulpes_vulpes
ENSRBIG00000027428	SMG5	77	65.700	ENSXETG00000033791	SMG5	99	64.943	Xenopus_tropicalis
ENSRBIG00000027428	SMG5	99	65.507	ENSXMAG00000013499	smg5	99	65.769	Xiphophorus_maculatus