EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRBIG00000030323 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC-3F
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 46144 bases
Position: chrMCGX01020304.1:29863-76006
Accession: 108521467
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000012693	APOBEC_N	PF08210.11	4.1e-104	1	2
ENSRBIP00000012693	APOBEC_N	PF08210.11	4.1e-104	2	2
ENSRBIP00000012687	APOBEC_N	PF08210.11	2.9e-58	1	1
ENSRBIP00000012703	APOBEC_N	PF08210.11	7.9e-58	1	1
ENSRBIP00000012693	APOBEC_C	PF05240.14	6.3e-66	1	2
ENSRBIP00000012693	APOBEC_C	PF05240.14	6.3e-66	2	2
ENSRBIP00000012703	APOBEC_C	PF05240.14	4.6e-33	1	1
ENSRBIP00000012687	APOBEC_C	PF05240.14	1.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000036417	-	5045	-	ENSRBIP00000012687	190 (aa)	-	A0A2K6KN31
ENSRBIT00000036423	-	5705	XM_017861317	ENSRBIP00000012693	362 (aa)	XP_017716806	A0A2K6KN73
ENSRBIT00000036433	-	3113	XM_017861321	ENSRBIP00000012703	190 (aa)	XP_017716810	A0A2K6KN84
ENSRBIT00000036430	-	282	-	ENSRBIP00000012700	94 (aa)	-	A0A2K6KN52

Gene Model

Click here to download ENSRBIG00000030323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000030323's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRBIG00000030323	-	100	58.221	ENSRBIG00000042829	-	98	58.221
ENSRBIG00000030323	-	100	88.122	ENSRBIG00000042297	-	100	93.631
ENSRBIG00000030323	-	99	33.000	ENSRBIG00000044756	APOBEC2	88	33.166
ENSRBIG00000030323	-	100	81.183	ENSRBIG00000030834	-	100	81.183
ENSRBIG00000030323	-	98	43.017	ENSRBIG00000026659	AICDA	97	43.165
ENSRBIG00000030323	-	100	41.231	ENSRBIG00000035436	APOBEC3G	98	39.084
ENSRBIG00000030323	-	94	36.842	ENSRBIG00000029088	APOBEC3H	92	35.570
ENSRBIG00000030323	-	58	35.652	ENSRBIG00000031161	APOBEC1	57	35.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000030323	-	100	82.105	ENSG00000244509	APOBEC3C	100	82.105	Homo_sapiens
ENSRBIG00000030323	-	100	79.570	ENSG00000243811	APOBEC3D	98	79.570	Homo_sapiens
ENSRBIG00000030323	-	100	88.398	ENSG00000128394	APOBEC3F	100	88.398	Homo_sapiens
ENSRBIG00000030323	-	100	68.947	ENSANAG00000030088	-	98	68.254	Aotus_nancymaae
ENSRBIG00000030323	-	72	67.424	ENSCJAG00000015317	-	100	68.939	Callithrix_jacchus
ENSRBIG00000030323	-	98	50.000	ENSCAFG00020002615	-	99	50.000	Canis_lupus_dingo
ENSRBIG00000030323	-	99	55.978	ENSTSYG00000028254	-	99	57.923	Carlito_syrichta
ENSRBIG00000030323	-	99	51.099	ENSTSYG00000030036	-	99	51.099	Carlito_syrichta
ENSRBIG00000030323	-	100	53.439	ENSTSYG00000034260	-	99	53.968	Carlito_syrichta
ENSRBIG00000030323	-	100	67.742	ENSCCAG00000030932	-	84	67.742	Cebus_capucinus
ENSRBIG00000030323	-	100	84.737	ENSCATG00000043226	APOBEC3C	100	84.737	Cercocebus_atys
ENSRBIG00000030323	-	99	91.848	ENSCATG00000033502	-	95	91.848	Cercocebus_atys
ENSRBIG00000030323	-	100	85.124	ENSCSAG00000006382	APOBEC3F	99	85.124	Chlorocebus_sabaeus
ENSRBIG00000030323	-	100	84.211	ENSCSAG00000006402	APOBEC3C	100	84.211	Chlorocebus_sabaeus
ENSRBIG00000030323	-	100	90.761	ENSCANG00000033269	-	100	89.779	Colobus_angolensis_palliatus
ENSRBIG00000030323	-	100	86.316	ENSCANG00000039177	APOBEC3C	100	86.316	Colobus_angolensis_palliatus
ENSRBIG00000030323	-	100	84.848	ENSCANG00000031957	-	100	84.848	Colobus_angolensis_palliatus
ENSRBIG00000030323	-	100	95.856	ENSCANG00000032904	-	100	95.856	Colobus_angolensis_palliatus
ENSRBIG00000030323	-	97	42.328	ENSDNOG00000044642	-	99	42.328	Dasypus_novemcinctus
ENSRBIG00000030323	-	99	47.959	ENSEASG00005018641	-	100	44.118	Equus_asinus_asinus
ENSRBIG00000030323	-	100	51.892	ENSECAG00000006071	-	98	51.892	Equus_caballus
ENSRBIG00000030323	-	100	88.674	ENSGGOG00000038678	APOBEC3F	100	88.674	Gorilla_gorilla
ENSRBIG00000030323	-	100	76.316	ENSGGOG00000036587	-	100	76.316	Gorilla_gorilla
ENSRBIG00000030323	-	98	48.128	ENSHGLG00000017315	-	90	43.548	Heterocephalus_glaber_female
ENSRBIG00000030323	-	98	48.128	ENSHGLG00100003105	-	93	48.128	Heterocephalus_glaber_male
ENSRBIG00000030323	-	100	82.105	ENSMFAG00000016792	APOBEC3C	100	82.105	Macaca_fascicularis
ENSRBIG00000030323	-	100	79.570	ENSMFAG00000002331	-	100	79.570	Macaca_fascicularis
ENSRBIG00000030323	-	100	91.160	ENSMFAG00000004037	APOBEC3F	100	91.160	Macaca_fascicularis
ENSRBIG00000030323	-	100	90.884	ENSMMUG00000004017	APOBEC3F	99	90.884	Macaca_mulatta
ENSRBIG00000030323	-	97	82.609	ENSMMUG00000004018	APOBEC3C	95	82.609	Macaca_mulatta
ENSRBIG00000030323	-	100	80.939	ENSMNEG00000043316	APOBEC3D	100	80.939	Macaca_nemestrina
ENSRBIG00000030323	-	100	83.684	ENSMNEG00000045196	APOBEC3C	100	83.684	Macaca_nemestrina
ENSRBIG00000030323	-	100	84.737	ENSMLEG00000036992	APOBEC3C	100	84.737	Mandrillus_leucophaeus
ENSRBIG00000030323	-	100	94.199	ENSMLEG00000029642	APOBEC3F	100	94.199	Mandrillus_leucophaeus
ENSRBIG00000030323	-	99	57.447	ENSMICG00000042615	-	89	57.447	Microcebus_murinus
ENSRBIG00000030323	-	99	45.223	ENSMLUG00000023676	-	99	46.597	Myotis_lucifugus
ENSRBIG00000030323	-	100	70.667	ENSNLEG00000035811	-	99	70.667	Nomascus_leucogenys
ENSRBIG00000030323	-	100	80.526	ENSNLEG00000028392	APOBEC3C	100	80.526	Nomascus_leucogenys
ENSRBIG00000030323	-	99	46.809	ENSOGAG00000030300	-	98	46.809	Otolemur_garnettii
ENSRBIG00000030323	-	98	50.802	ENSOGAG00000032498	-	99	50.802	Otolemur_garnettii
ENSRBIG00000030323	-	100	44.780	ENSOGAG00000033404	-	100	46.667	Otolemur_garnettii
ENSRBIG00000030323	-	100	77.957	ENSPPAG00000028218	-	98	77.957	Pan_paniscus
ENSRBIG00000030323	-	100	82.632	ENSPPAG00000014118	APOBEC3C	100	82.632	Pan_paniscus
ENSRBIG00000030323	-	99	48.649	ENSPPRG00000003726	-	97	49.730	Panthera_pardus
ENSRBIG00000030323	-	100	89.227	ENSPTRG00000014385	APOBEC3C	100	89.227	Pan_troglodytes
ENSRBIG00000030323	-	100	77.419	ENSPTRG00000041588	APOBEC3D	100	75.789	Pan_troglodytes
ENSRBIG00000030323	-	100	92.541	ENSPANG00000010775	APOBEC3F	100	92.541	Papio_anubis
ENSRBIG00000030323	-	100	80.000	ENSPPYG00000011832	APOBEC3C	100	80.000	Pongo_abelii
ENSRBIG00000030323	-	70	59.690	ENSPCOG00000022067	-	98	59.690	Propithecus_coquereli
ENSRBIG00000030323	-	71	60.800	ENSPCOG00000018072	-	100	60.800	Propithecus_coquereli
ENSRBIG00000030323	-	92	49.020	ENSPVAG00000009461	-	72	50.407	Pteropus_vampyrus
ENSRBIG00000030323	-	100	100.000	ENSRROG00000029045	APOBEC3C	100	100.000	Rhinopithecus_roxellana
ENSRBIG00000030323	-	100	80.645	ENSRROG00000028557	-	100	80.645	Rhinopithecus_roxellana
ENSRBIG00000030323	-	100	87.845	ENSRROG00000029996	-	100	87.845	Rhinopithecus_roxellana
ENSRBIG00000030323	-	100	70.588	ENSSBOG00000032780	-	100	70.588	Saimiri_boliviensis_boliviensis
ENSRBIG00000030323	-	99	46.703	ENSUAMG00000004433	-	100	47.253	Ursus_americanus
ENSRBIG00000030323	-	99	47.568	ENSUMAG00000014441	-	87	48.128	Ursus_maritimus
ENSRBIG00000030323	-	77	52.349	ENSVVUG00000014628	-	97	50.746	Vulpes_vulpes