EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRBIG00000036057 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 110940 bases
Position: chrMCGX01000676.1:1363990-1474929
Accession: 108538401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000024319	RRM_1	PF00076.22	1.3e-32	1	2
ENSRBIP00000024319	RRM_1	PF00076.22	1.3e-32	2	2
ENSRBIP00000024328	RRM_1	PF00076.22	1.4e-32	1	2
ENSRBIP00000024328	RRM_1	PF00076.22	1.4e-32	2	2
ENSRBIP00000024323	RRM_1	PF00076.22	3.4e-32	1	2
ENSRBIP00000024323	RRM_1	PF00076.22	3.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000048230	PSPC1-203	1092	-	ENSRBIP00000024328	363 (aa)	-	A0A2K6LLC4
ENSRBIT00000048225	PSPC1-202	6683	XM_017886459	ENSRBIP00000024323	487 (aa)	XP_017741948	A0A2K6LLB9
ENSRBIT00000048221	PSPC1-201	1928	-	ENSRBIP00000024319	357 (aa)	-	A0A2K6LLE5

Gene Model

Click here to download ENSRBIG00000036057's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000036057's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRBIG00000036057	PSPC1	84	58.780	ENSRBIG00000037966	NONO	85	72.549
ENSRBIG00000036057	PSPC1	86	69.032	ENSRBIG00000035286	SFPQ	80	67.832

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000036057	PSPC1	100	99.589	ENSG00000121390	PSPC1	93	99.589	Homo_sapiens
ENSRBIG00000036057	PSPC1	91	81.173	ENSAPOG00000015946	pspc1	84	70.897	Acanthochromis_polyacanthus
ENSRBIG00000036057	PSPC1	100	99.179	ENSAMEG00000017420	PSPC1	93	99.179	Ailuropoda_melanoleuca
ENSRBIG00000036057	PSPC1	91	71.914	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSRBIG00000036057	PSPC1	91	80.556	ENSAOCG00000005279	pspc1	83	70.460	Amphiprion_ocellaris
ENSRBIG00000036057	PSPC1	91	80.556	ENSAPEG00000015927	pspc1	84	70.460	Amphiprion_percula
ENSRBIG00000036057	PSPC1	91	67.593	ENSATEG00000004878	pspc1	80	60.274	Anabas_testudineus
ENSRBIG00000036057	PSPC1	89	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSRBIG00000036057	PSPC1	83	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSRBIG00000036057	PSPC1	93	93.824	ENSACAG00000002093	PSPC1	91	89.441	Anolis_carolinensis
ENSRBIG00000036057	PSPC1	80	70.732	ENSACAG00000013307	-	56	64.835	Anolis_carolinensis
ENSRBIG00000036057	PSPC1	100	98.973	ENSANAG00000000059	PSPC1	93	98.973	Aotus_nancymaae
ENSRBIG00000036057	PSPC1	97	67.606	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSRBIG00000036057	PSPC1	94	77.713	ENSAMXG00000036881	pspc1	83	71.681	Astyanax_mexicanus
ENSRBIG00000036057	PSPC1	100	96.715	ENSBTAG00000003934	PSPC1	94	96.715	Bos_taurus
ENSRBIG00000036057	PSPC1	100	98.973	ENSCJAG00000004554	PSPC1	93	98.973	Callithrix_jacchus
ENSRBIG00000036057	PSPC1	100	98.973	ENSCAFG00020002009	PSPC1	93	98.973	Canis_lupus_dingo
ENSRBIG00000036057	PSPC1	100	96.715	ENSCHIG00000016708	PSPC1	94	96.715	Capra_hircus
ENSRBIG00000036057	PSPC1	82	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSRBIG00000036057	PSPC1	100	98.319	ENSCPOG00000000395	PSPC1	94	97.741	Cavia_porcellus
ENSRBIG00000036057	PSPC1	100	98.973	ENSCCAG00000033498	PSPC1	93	98.973	Cebus_capucinus
ENSRBIG00000036057	PSPC1	100	99.179	ENSCATG00000036434	PSPC1	100	98.898	Cercocebus_atys
ENSRBIG00000036057	PSPC1	95	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSRBIG00000036057	PSPC1	98	96.857	ENSCHOG00000008913	PSPC1	93	90.965	Choloepus_hoffmanni
ENSRBIG00000036057	PSPC1	98	93.096	ENSCPBG00000020859	PSPC1	91	93.096	Chrysemys_picta_bellii
ENSRBIG00000036057	PSPC1	86	58.766	ENSCSAVG00000003533	-	58	58.199	Ciona_savignyi
ENSRBIG00000036057	PSPC1	74	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSRBIG00000036057	PSPC1	100	97.331	ENSCGRG00001018368	Pspc1	93	97.331	Cricetulus_griseus_chok1gshd
ENSRBIG00000036057	PSPC1	100	97.331	ENSCGRG00000011724	Pspc1	93	97.331	Cricetulus_griseus_crigri
ENSRBIG00000036057	PSPC1	89	78.616	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSRBIG00000036057	PSPC1	97	77.810	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSRBIG00000036057	PSPC1	100	96.920	ENSDNOG00000011078	PSPC1	93	96.920	Dasypus_novemcinctus
ENSRBIG00000036057	PSPC1	100	94.045	ENSDORG00000016050	Pspc1	93	94.045	Dipodomys_ordii
ENSRBIG00000036057	PSPC1	59	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSRBIG00000036057	PSPC1	87	45.238	ENSEBUG00000010133	pspc1	80	47.541	Eptatretus_burgeri
ENSRBIG00000036057	PSPC1	90	73.313	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSRBIG00000036057	PSPC1	100	98.357	ENSEASG00005000119	PSPC1	93	98.357	Equus_asinus_asinus
ENSRBIG00000036057	PSPC1	100	98.357	ENSECAG00000017286	PSPC1	93	98.357	Equus_caballus
ENSRBIG00000036057	PSPC1	82	87.023	ENSEEUG00000011288	-	81	83.217	Erinaceus_europaeus
ENSRBIG00000036057	PSPC1	99	78.409	ENSELUG00000003746	pspc1	82	79.130	Esox_lucius
ENSRBIG00000036057	PSPC1	100	99.179	ENSFCAG00000027841	PSPC1	93	99.179	Felis_catus
ENSRBIG00000036057	PSPC1	96	94.647	ENSFALG00000008750	PSPC1	88	94.647	Ficedula_albicollis
ENSRBIG00000036057	PSPC1	99	95.893	ENSFDAG00000002617	PSPC1	95	95.893	Fukomys_damarensis
ENSRBIG00000036057	PSPC1	81	82.986	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSRBIG00000036057	PSPC1	95	95.238	ENSGALG00000017142	PSPC1	89	94.647	Gallus_gallus
ENSRBIG00000036057	PSPC1	96	73.803	ENSGAFG00000006327	pspc1	71	74.352	Gambusia_affinis
ENSRBIG00000036057	PSPC1	93	73.414	ENSGACG00000014901	pspc1	99	70.455	Gasterosteus_aculeatus
ENSRBIG00000036057	PSPC1	94	71.720	ENSGAGG00000017325	-	58	67.105	Gopherus_agassizii
ENSRBIG00000036057	PSPC1	98	93.096	ENSGAGG00000019164	PSPC1	91	93.096	Gopherus_agassizii
ENSRBIG00000036057	PSPC1	100	99.384	ENSGGOG00000003414	PSPC1	93	99.384	Gorilla_gorilla
ENSRBIG00000036057	PSPC1	91	79.321	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSRBIG00000036057	PSPC1	100	97.536	ENSHGLG00000018811	PSPC1	94	97.536	Heterocephalus_glaber_female
ENSRBIG00000036057	PSPC1	85	98.013	ENSHGLG00100007962	PSPC1	91	99.327	Heterocephalus_glaber_male
ENSRBIG00000036057	PSPC1	93	72.892	ENSHCOG00000013251	pspc1	83	71.658	Hippocampus_comes
ENSRBIG00000036057	PSPC1	96	81.105	ENSIPUG00000013192	pspc1	92	72.301	Ictalurus_punctatus
ENSRBIG00000036057	PSPC1	100	98.152	ENSSTOG00000026833	PSPC1	93	98.152	Ictidomys_tridecemlineatus
ENSRBIG00000036057	PSPC1	100	97.536	ENSJJAG00000018334	Pspc1	93	97.536	Jaculus_jaculus
ENSRBIG00000036057	PSPC1	95	55.724	ENSKMAG00000013525	-	91	52.236	Kryptolebias_marmoratus
ENSRBIG00000036057	PSPC1	99	75.284	ENSLBEG00000004474	pspc1	79	70.872	Labrus_bergylta
ENSRBIG00000036057	PSPC1	94	85.590	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSRBIG00000036057	PSPC1	95	84.382	ENSLOCG00000010832	pspc1	94	82.046	Lepisosteus_oculatus
ENSRBIG00000036057	PSPC1	100	97.947	ENSLAFG00000010968	PSPC1	93	97.947	Loxodonta_africana
ENSRBIG00000036057	PSPC1	100	99.179	ENSMFAG00000032728	PSPC1	98	99.145	Macaca_fascicularis
ENSRBIG00000036057	PSPC1	100	99.179	ENSMMUG00000020262	PSPC1	95	99.143	Macaca_mulatta
ENSRBIG00000036057	PSPC1	100	99.179	ENSMNEG00000027401	PSPC1	93	99.179	Macaca_nemestrina
ENSRBIG00000036057	PSPC1	82	99.749	ENSMLEG00000039043	PSPC1	94	99.749	Mandrillus_leucophaeus
ENSRBIG00000036057	PSPC1	91	78.086	ENSMAMG00000004333	pspc1	83	68.996	Mastacembelus_armatus
ENSRBIG00000036057	PSPC1	97	67.606	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSRBIG00000036057	PSPC1	83	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSRBIG00000036057	PSPC1	100	87.912	ENSMAUG00000021067	Pspc1	91	91.315	Mesocricetus_auratus
ENSRBIG00000036057	PSPC1	100	98.357	ENSMICG00000013970	PSPC1	93	98.357	Microcebus_murinus
ENSRBIG00000036057	PSPC1	100	97.131	ENSMOCG00000006060	Pspc1	93	97.131	Microtus_ochrogaster
ENSRBIG00000036057	PSPC1	96	54.651	ENSMMOG00000004352	pspc1	62	51.734	Mola_mola
ENSRBIG00000036057	PSPC1	98	98.000	ENSMODG00000008029	PSPC1	73	96.882	Monodelphis_domestica
ENSRBIG00000036057	PSPC1	91	77.469	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSRBIG00000036057	PSPC1	100	97.131	MGP_CAROLIEiJ_G0019341	Pspc1	93	97.131	Mus_caroli
ENSRBIG00000036057	PSPC1	100	97.336	ENSMUSG00000021938	Pspc1	93	97.336	Mus_musculus
ENSRBIG00000036057	PSPC1	100	97.131	MGP_PahariEiJ_G0030359	Pspc1	93	97.131	Mus_pahari
ENSRBIG00000036057	PSPC1	100	97.336	MGP_SPRETEiJ_G0020232	Pspc1	93	97.336	Mus_spretus
ENSRBIG00000036057	PSPC1	100	98.973	ENSMPUG00000013347	PSPC1	93	98.973	Mustela_putorius_furo
ENSRBIG00000036057	PSPC1	100	96.735	ENSMLUG00000017663	PSPC1	94	96.735	Myotis_lucifugus
ENSRBIG00000036057	PSPC1	100	97.741	ENSNGAG00000011271	Pspc1	93	97.741	Nannospalax_galili
ENSRBIG00000036057	PSPC1	91	72.615	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSRBIG00000036057	PSPC1	100	99.384	ENSNLEG00000001294	PSPC1	93	99.384	Nomascus_leucogenys
ENSRBIG00000036057	PSPC1	98	78.286	ENSMEUG00000000476	PSPC1	93	74.949	Notamacropus_eugenii
ENSRBIG00000036057	PSPC1	100	86.037	ENSODEG00000007817	-	93	81.947	Octodon_degus
ENSRBIG00000036057	PSPC1	95	89.676	ENSODEG00000019012	-	94	87.018	Octodon_degus
ENSRBIG00000036057	PSPC1	91	79.630	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSRBIG00000036057	PSPC1	82	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSRBIG00000036057	PSPC1	100	68.507	ENSOANG00000011381	-	96	66.462	Ornithorhynchus_anatinus
ENSRBIG00000036057	PSPC1	100	98.152	ENSOCUG00000006153	PSPC1	93	98.152	Oryctolagus_cuniculus
ENSRBIG00000036057	PSPC1	91	79.012	ENSORLG00000004232	-	91	63.095	Oryzias_latipes
ENSRBIG00000036057	PSPC1	91	78.395	ENSORLG00020000578	PSPC1	91	64.257	Oryzias_latipes_hni
ENSRBIG00000036057	PSPC1	91	79.321	ENSORLG00015017480	pspc1	87	66.022	Oryzias_latipes_hsok
ENSRBIG00000036057	PSPC1	59	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSRBIG00000036057	PSPC1	100	98.768	ENSOGAG00000012643	PSPC1	93	98.768	Otolemur_garnettii
ENSRBIG00000036057	PSPC1	94	98.693	ENSOARG00000014163	PSPC1	95	98.693	Ovis_aries
ENSRBIG00000036057	PSPC1	93	99.094	ENSPPAG00000009836	PSPC1	99	94.334	Pan_paniscus
ENSRBIG00000036057	PSPC1	100	99.179	ENSPPRG00000008833	PSPC1	93	99.179	Panthera_pardus
ENSRBIG00000036057	PSPC1	82	99.499	ENSPTIG00000016917	PSPC1	84	99.499	Panthera_tigris_altaica
ENSRBIG00000036057	PSPC1	100	99.160	ENSPTRG00000005677	PSPC1	92	99.556	Pan_troglodytes
ENSRBIG00000036057	PSPC1	100	99.384	ENSPANG00000001992	PSPC1	96	99.430	Papio_anubis
ENSRBIG00000036057	PSPC1	96	80.516	ENSPKIG00000003578	pspc1	85	75.604	Paramormyrops_kingsleyae
ENSRBIG00000036057	PSPC1	96	94.004	ENSPSIG00000005168	PSPC1	89	94.004	Pelodiscus_sinensis
ENSRBIG00000036057	PSPC1	86	70.794	ENSPMGG00000015135	pspc1	86	70.701	Periophthalmus_magnuspinnatus
ENSRBIG00000036057	PSPC1	100	97.741	ENSPEMG00000015214	Pspc1	93	97.741	Peromyscus_maniculatus_bairdii
ENSRBIG00000036057	PSPC1	78	44.558	ENSPMAG00000004618	pspc1	89	44.558	Petromyzon_marinus
ENSRBIG00000036057	PSPC1	100	97.125	ENSPCIG00000017680	PSPC1	93	97.125	Phascolarctos_cinereus
ENSRBIG00000036057	PSPC1	97	73.684	ENSPFOG00000003362	pspc1	94	65.347	Poecilia_formosa
ENSRBIG00000036057	PSPC1	97	64.286	ENSPLAG00000004407	-	55	58.824	Poecilia_latipinna
ENSRBIG00000036057	PSPC1	97	73.684	ENSPLAG00000011540	pspc1	93	65.347	Poecilia_latipinna
ENSRBIG00000036057	PSPC1	97	73.130	ENSPMEG00000008322	pspc1	93	64.950	Poecilia_mexicana
ENSRBIG00000036057	PSPC1	95	66.667	ENSPMEG00000001025	-	51	60.753	Poecilia_mexicana
ENSRBIG00000036057	PSPC1	97	72.853	ENSPREG00000007786	pspc1	93	65.347	Poecilia_reticulata
ENSRBIG00000036057	PSPC1	100	98.973	ENSPPYG00000005186	PSPC1	93	98.973	Pongo_abelii
ENSRBIG00000036057	PSPC1	70	100.000	ENSPCAG00000008314	-	60	100.000	Procavia_capensis
ENSRBIG00000036057	PSPC1	98	98.571	ENSPCOG00000014364	PSPC1	93	93.840	Propithecus_coquereli
ENSRBIG00000036057	PSPC1	100	95.330	ENSPVAG00000005036	PSPC1	93	95.277	Pteropus_vampyrus
ENSRBIG00000036057	PSPC1	97	67.606	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSRBIG00000036057	PSPC1	90	81.734	ENSPNAG00000016511	pspc1	94	69.880	Pygocentrus_nattereri
ENSRBIG00000036057	PSPC1	100	97.331	ENSRNOG00000020782	Pspc1	93	97.331	Rattus_norvegicus
ENSRBIG00000036057	PSPC1	100	100.000	ENSRROG00000036334	PSPC1	93	100.000	Rhinopithecus_roxellana
ENSRBIG00000036057	PSPC1	85	89.104	ENSSBOG00000028172	PSPC1	88	98.134	Saimiri_boliviensis_boliviensis
ENSRBIG00000036057	PSPC1	98	91.667	ENSSHAG00000004696	PSPC1	93	91.616	Sarcophilus_harrisii
ENSRBIG00000036057	PSPC1	91	85.583	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSRBIG00000036057	PSPC1	96	74.785	ENSSMAG00000001761	pspc1	86	74.785	Scophthalmus_maximus
ENSRBIG00000036057	PSPC1	91	81.173	ENSSDUG00000010651	pspc1	81	71.460	Seriola_dumerili
ENSRBIG00000036057	PSPC1	91	74.074	ENSSLDG00000004284	pspc1	87	60.043	Seriola_lalandi_dorsalis
ENSRBIG00000036057	PSPC1	97	91.277	ENSSARG00000000888	PSPC1	93	90.349	Sorex_araneus
ENSRBIG00000036057	PSPC1	96	81.020	ENSSPUG00000008550	PSPC1	91	78.819	Sphenodon_punctatus
ENSRBIG00000036057	PSPC1	90	65.839	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSRBIG00000036057	PSPC1	95	78.171	ENSSPAG00000001921	pspc1	82	70.241	Stegastes_partitus
ENSRBIG00000036057	PSPC1	100	97.541	ENSSSCG00000009569	PSPC1	94	97.541	Sus_scrofa
ENSRBIG00000036057	PSPC1	96	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSRBIG00000036057	PSPC1	98	66.760	ENSTRUG00000011335	pspc1	82	63.326	Takifugu_rubripes
ENSRBIG00000036057	PSPC1	94	71.726	ENSTNIG00000010358	pspc1	90	64.302	Tetraodon_nigroviridis
ENSRBIG00000036057	PSPC1	95	86.127	ENSTBEG00000002361	PSPC1	93	74.949	Tupaia_belangeri
ENSRBIG00000036057	PSPC1	100	97.541	ENSTTRG00000003343	PSPC1	94	97.541	Tursiops_truncatus
ENSRBIG00000036057	PSPC1	88	99.365	ENSUAMG00000012309	PSPC1	90	99.365	Ursus_americanus
ENSRBIG00000036057	PSPC1	100	98.973	ENSUMAG00000013993	PSPC1	100	98.973	Ursus_maritimus
ENSRBIG00000036057	PSPC1	82	99.499	ENSVPAG00000010029	PSPC1	100	99.499	Vicugna_pacos
ENSRBIG00000036057	PSPC1	100	98.973	ENSVVUG00000006414	PSPC1	93	98.973	Vulpes_vulpes
ENSRBIG00000036057	PSPC1	97	72.905	ENSXCOG00000017438	pspc1	85	72.905	Xiphophorus_couchianus
ENSRBIG00000036057	PSPC1	97	73.184	ENSXMAG00000007929	pspc1	85	73.184	Xiphophorus_maculatus