EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRBIG00000037219 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 17307 bases
Position: chrMCGX01022350.1:9627-26933
Accession: 108522542
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000026708	Smg4_UPF3	PF03467.15	1.2e-38	1	1
ENSRBIP00000026707	Smg4_UPF3	PF03467.15	1.3e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000050627	UPF3B-201	2064	XM_017862799	ENSRBIP00000026707	396 (aa)	XP_017718288	A0A2K6LT67
ENSRBIT00000050628	UPF3B-202	2025	XM_017862800	ENSRBIP00000026708	383 (aa)	XP_017718289	A0A2K6LT68

Gene Model

Click here to download ENSRBIG00000037219's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000037219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000037219	UPF3B	100	97.481	ENSG00000125351	UPF3B	82	97.481	Homo_sapiens
ENSRBIG00000037219	UPF3B	100	56.853	ENSAPOG00000012775	upf3b	53	65.432	Acanthochromis_polyacanthus
ENSRBIG00000037219	UPF3B	100	93.451	ENSAMEG00000000163	UPF3B	82	93.451	Ailuropoda_melanoleuca
ENSRBIG00000037219	UPF3B	100	56.853	ENSAPEG00000005545	upf3b	84	52.417	Amphiprion_percula
ENSRBIG00000037219	UPF3B	96	57.784	ENSATEG00000018742	upf3b	80	54.474	Anabas_testudineus
ENSRBIG00000037219	UPF3B	97	49.740	ENSACAG00000001540	UPF3A	86	49.072	Anolis_carolinensis
ENSRBIG00000037219	UPF3B	99	67.784	ENSACAG00000003625	UPF3B	83	67.784	Anolis_carolinensis
ENSRBIG00000037219	UPF3B	51	67.857	ENSANAG00000033169	-	70	66.162	Aotus_nancymaae
ENSRBIG00000037219	UPF3B	100	95.718	ENSANAG00000021894	-	82	95.718	Aotus_nancymaae
ENSRBIG00000037219	UPF3B	100	88.281	ENSANAG00000025598	-	81	86.979	Aotus_nancymaae
ENSRBIG00000037219	UPF3B	95	58.133	ENSACLG00000001649	upf3b	81	52.926	Astatotilapia_calliptera
ENSRBIG00000037219	UPF3B	51	62.136	ENSAMXG00000000199	upf3b	68	59.223	Astyanax_mexicanus
ENSRBIG00000037219	UPF3B	62	98.361	ENSBTAG00000035615	UPF3B	72	98.361	Bos_taurus
ENSRBIG00000037219	UPF3B	100	95.718	ENSCJAG00000004975	UPF3B	82	95.718	Callithrix_jacchus
ENSRBIG00000037219	UPF3B	100	92.947	ENSCAFG00000018426	UPF3B	82	92.191	Canis_familiaris
ENSRBIG00000037219	UPF3B	100	89.844	ENSCAFG00020004074	UPF3B	81	88.281	Canis_lupus_dingo
ENSRBIG00000037219	UPF3B	97	92.746	ENSCHIG00000018011	-	82	92.746	Capra_hircus
ENSRBIG00000037219	UPF3B	92	65.537	ENSCHIG00000011454	-	77	63.277	Capra_hircus
ENSRBIG00000037219	UPF3B	100	93.199	ENSCHIG00000000247	-	82	93.199	Capra_hircus
ENSRBIG00000037219	UPF3B	100	92.708	ENSTSYG00000014690	UPF3B	82	91.927	Carlito_syrichta
ENSRBIG00000037219	UPF3B	57	96.078	ENSCCAG00000021964	-	73	96.078	Cebus_capucinus
ENSRBIG00000037219	UPF3B	98	58.158	ENSCCAG00000029813	-	72	71.978	Cebus_capucinus
ENSRBIG00000037219	UPF3B	100	97.229	ENSCATG00000017506	UPF3B	82	97.229	Cercocebus_atys
ENSRBIG00000037219	UPF3B	99	90.339	ENSCLAG00000003260	UPF3B	82	90.104	Chinchilla_lanigera
ENSRBIG00000037219	UPF3B	100	97.481	ENSCSAG00000018348	UPF3B	82	97.481	Chlorocebus_sabaeus
ENSRBIG00000037219	UPF3B	99	66.237	ENSCPBG00000020685	UPF3B	83	66.067	Chrysemys_picta_bellii
ENSRBIG00000037219	UPF3B	65	99.454	ENSCANG00000029220	UPF3B	73	99.454	Colobus_angolensis_palliatus
ENSRBIG00000037219	UPF3B	69	81.887	ENSCGRG00001013643	-	65	78.926	Cricetulus_griseus_chok1gshd
ENSRBIG00000037219	UPF3B	100	81.865	ENSCGRG00001006858	-	82	82.124	Cricetulus_griseus_chok1gshd
ENSRBIG00000037219	UPF3B	100	81.606	ENSCGRG00000007627	Upf3b	92	81.865	Cricetulus_griseus_crigri
ENSRBIG00000037219	UPF3B	91	57.895	ENSCSEG00000002046	upf3b	51	62.151	Cynoglossus_semilaevis
ENSRBIG00000037219	UPF3B	97	57.403	ENSDARG00000000489	upf3b	82	57.403	Danio_rerio
ENSRBIG00000037219	UPF3B	100	92.695	ENSDNOG00000008665	UPF3B	82	92.695	Dasypus_novemcinctus
ENSRBIG00000037219	UPF3B	99	87.467	ENSDORG00000006077	Upf3b	82	86.198	Dipodomys_ordii
ENSRBIG00000037219	UPF3B	99	90.339	ENSEASG00005012919	UPF3B	81	89.295	Equus_asinus_asinus
ENSRBIG00000037219	UPF3B	99	90.339	ENSECAG00000016947	UPF3B	81	89.295	Equus_caballus
ENSRBIG00000037219	UPF3B	100	52.745	ENSELUG00000020389	upf3b	50	65.306	Esox_lucius
ENSRBIG00000037219	UPF3B	100	91.729	ENSFCAG00000004388	UPF3B	82	91.980	Felis_catus
ENSRBIG00000037219	UPF3B	99	66.184	ENSFALG00000001569	UPF3B	81	66.912	Ficedula_albicollis
ENSRBIG00000037219	UPF3B	100	91.146	ENSFDAG00000018869	UPF3B	82	91.146	Fukomys_damarensis
ENSRBIG00000037219	UPF3B	92	56.319	ENSGMOG00000001621	upf3b	52	62.295	Gadus_morhua
ENSRBIG00000037219	UPF3B	99	69.211	ENSGALG00000008618	UPF3B	81	70.619	Gallus_gallus
ENSRBIG00000037219	UPF3B	95	55.313	ENSGAFG00000000829	upf3b	81	55.080	Gambusia_affinis
ENSRBIG00000037219	UPF3B	90	57.143	ENSGACG00000017435	upf3b	68	74.054	Gasterosteus_aculeatus
ENSRBIG00000037219	UPF3B	99	68.895	ENSGAGG00000001219	UPF3B	83	68.895	Gopherus_agassizii
ENSRBIG00000037219	UPF3B	100	97.481	ENSGGOG00000023995	UPF3B	82	97.481	Gorilla_gorilla
ENSRBIG00000037219	UPF3B	99	92.167	ENSHGLG00000019582	-	82	91.927	Heterocephalus_glaber_female
ENSRBIG00000037219	UPF3B	82	84.076	ENSHGLG00000011189	-	74	84.395	Heterocephalus_glaber_female
ENSRBIG00000037219	UPF3B	99	87.990	ENSHGLG00100002042	-	81	87.760	Heterocephalus_glaber_male
ENSRBIG00000037219	UPF3B	82	83.758	ENSHGLG00100001889	-	74	83.758	Heterocephalus_glaber_male
ENSRBIG00000037219	UPF3B	100	54.198	ENSHCOG00000017004	upf3b	77	55.125	Hippocampus_comes
ENSRBIG00000037219	UPF3B	96	57.963	ENSIPUG00000019249	upf3b	82	59.008	Ictalurus_punctatus
ENSRBIG00000037219	UPF3B	99	90.862	ENSSTOG00000001101	UPF3B	82	90.625	Ictidomys_tridecemlineatus
ENSRBIG00000037219	UPF3B	100	85.751	ENSJJAG00000000053	Upf3b	82	86.010	Jaculus_jaculus
ENSRBIG00000037219	UPF3B	100	59.000	ENSLACG00000008691	UPF3B	85	59.750	Latimeria_chalumnae
ENSRBIG00000037219	UPF3B	50	77.083	ENSLOCG00000015238	upf3b	83	58.398	Lepisosteus_oculatus
ENSRBIG00000037219	UPF3B	100	90.365	ENSLAFG00000001267	UPF3B	82	90.365	Loxodonta_africana
ENSRBIG00000037219	UPF3B	99	42.078	ENSLAFG00000023358	UPF3A	91	41.039	Loxodonta_africana
ENSRBIG00000037219	UPF3B	100	96.977	ENSMFAG00000045414	UPF3B	82	96.977	Macaca_fascicularis
ENSRBIG00000037219	UPF3B	100	96.977	ENSMMUG00000020222	UPF3B	82	96.977	Macaca_mulatta
ENSRBIG00000037219	UPF3B	100	96.977	ENSMNEG00000039794	UPF3B	82	96.977	Macaca_nemestrina
ENSRBIG00000037219	UPF3B	100	97.229	ENSMLEG00000010999	UPF3B	82	97.229	Mandrillus_leucophaeus
ENSRBIG00000037219	UPF3B	99	67.939	ENSMGAG00000007728	UPF3B	98	69.689	Meleagris_gallopavo
ENSRBIG00000037219	UPF3B	99	49.377	ENSMGAG00000014837	UPF3A	91	49.612	Meleagris_gallopavo
ENSRBIG00000037219	UPF3B	100	82.456	ENSMAUG00000008705	Upf3b	82	82.707	Mesocricetus_auratus
ENSRBIG00000037219	UPF3B	65	96.739	ENSMICG00000001743	UPF3B	73	96.739	Microcebus_murinus
ENSRBIG00000037219	UPF3B	99	83.668	ENSMOCG00000017893	Upf3b	82	82.872	Microtus_ochrogaster
ENSRBIG00000037219	UPF3B	96	54.377	ENSMMOG00000004183	upf3b	80	54.933	Mola_mola
ENSRBIG00000037219	UPF3B	99	71.907	ENSMODG00000010232	UPF3B	91	71.134	Monodelphis_domestica
ENSRBIG00000037219	UPF3B	97	51.145	ENSMODG00000003159	UPF3A	88	50.128	Monodelphis_domestica
ENSRBIG00000037219	UPF3B	51	70.098	ENSMALG00000008042	upf3b	51	66.667	Monopterus_albus
ENSRBIG00000037219	UPF3B	100	83.420	MGP_CAROLIEiJ_G0032999	Upf3b	83	86.977	Mus_caroli
ENSRBIG00000037219	UPF3B	100	82.902	ENSMUSG00000036572	Upf3b	83	86.977	Mus_musculus
ENSRBIG00000037219	UPF3B	100	82.383	MGP_PahariEiJ_G0031543	Upf3b	83	86.636	Mus_pahari
ENSRBIG00000037219	UPF3B	100	82.902	MGP_SPRETEiJ_G0034152	Upf3b	83	86.977	Mus_spretus
ENSRBIG00000037219	UPF3B	97	91.957	ENSMPUG00000001531	UPF3B	81	91.153	Mustela_putorius_furo
ENSRBIG00000037219	UPF3B	100	92.188	ENSMLUG00000010821	UPF3B	82	92.188	Myotis_lucifugus
ENSRBIG00000037219	UPF3B	100	81.606	ENSNGAG00000008231	Upf3b	82	83.161	Nannospalax_galili
ENSRBIG00000037219	UPF3B	100	97.229	ENSNLEG00000014897	UPF3B	82	97.229	Nomascus_leucogenys
ENSRBIG00000037219	UPF3B	71	82.645	ENSMEUG00000015615	UPF3B	72	82.787	Notamacropus_eugenii
ENSRBIG00000037219	UPF3B	100	84.334	ENSODEG00000002186	-	81	84.073	Octodon_degus
ENSRBIG00000037219	UPF3B	100	58.690	ENSONIG00000002536	upf3b	85	54.040	Oreochromis_niloticus
ENSRBIG00000037219	UPF3B	87	42.363	ENSOANG00000006985	-	58	48.770	Ornithorhynchus_anatinus
ENSRBIG00000037219	UPF3B	100	93.199	ENSOCUG00000010213	UPF3B	82	93.199	Oryctolagus_cuniculus
ENSRBIG00000037219	UPF3B	97	79.412	ENSOGAG00000033003	-	81	79.947	Otolemur_garnettii
ENSRBIG00000037219	UPF3B	100	92.708	ENSOGAG00000004643	-	82	92.708	Otolemur_garnettii
ENSRBIG00000037219	UPF3B	99	67.632	ENSOARG00000007869	-	89	62.887	Ovis_aries
ENSRBIG00000037219	UPF3B	100	92.500	ENSOARG00000016051	-	82	92.500	Ovis_aries
ENSRBIG00000037219	UPF3B	100	97.481	ENSPPAG00000040390	UPF3B	82	97.481	Pan_paniscus
ENSRBIG00000037219	UPF3B	100	92.947	ENSPPRG00000023536	UPF3B	82	92.947	Panthera_pardus
ENSRBIG00000037219	UPF3B	100	87.835	ENSPTIG00000015264	UPF3B	83	88.808	Panthera_tigris_altaica
ENSRBIG00000037219	UPF3B	100	97.481	ENSPTRG00000022228	UPF3B	82	97.481	Pan_troglodytes
ENSRBIG00000037219	UPF3B	100	97.229	ENSPANG00000000900	UPF3B	82	97.229	Papio_anubis
ENSRBIG00000037219	UPF3B	100	53.904	ENSPKIG00000019226	upf3b	84	55.330	Paramormyrops_kingsleyae
ENSRBIG00000037219	UPF3B	67	73.664	ENSPSIG00000005833	UPF3B	85	75.000	Pelodiscus_sinensis
ENSRBIG00000037219	UPF3B	96	51.407	ENSPSIG00000007468	UPF3A	90	50.515	Pelodiscus_sinensis
ENSRBIG00000037219	UPF3B	52	69.307	ENSPMGG00000016067	upf3b	72	70.707	Periophthalmus_magnuspinnatus
ENSRBIG00000037219	UPF3B	100	84.500	ENSPEMG00000012352	Upf3b	82	84.750	Peromyscus_maniculatus_bairdii
ENSRBIG00000037219	UPF3B	97	69.393	ENSPCIG00000028914	UPF3B	81	65.206	Phascolarctos_cinereus
ENSRBIG00000037219	UPF3B	95	56.676	ENSPLAG00000019922	upf3b	81	56.417	Poecilia_latipinna
ENSRBIG00000037219	UPF3B	95	56.676	ENSPLAG00000005105	upf3b	81	56.417	Poecilia_latipinna
ENSRBIG00000037219	UPF3B	95	56.948	ENSPMEG00000023532	upf3b	81	56.417	Poecilia_mexicana
ENSRBIG00000037219	UPF3B	71	97.959	ENSPPYG00000020675	-	74	99.490	Pongo_abelii
ENSRBIG00000037219	UPF3B	99	90.404	ENSPCAG00000009464	UPF3B	82	90.176	Procavia_capensis
ENSRBIG00000037219	UPF3B	100	92.965	ENSPCOG00000021960	UPF3B	82	92.965	Propithecus_coquereli
ENSRBIG00000037219	UPF3B	96	42.708	ENSPVAG00000005656	UPF3A	77	36.316	Pteropus_vampyrus
ENSRBIG00000037219	UPF3B	100	76.071	ENSPVAG00000014075	UPF3B	82	76.071	Pteropus_vampyrus
ENSRBIG00000037219	UPF3B	95	57.527	ENSPNYG00000009846	upf3b	81	52.394	Pundamilia_nyererei
ENSRBIG00000037219	UPF3B	96	57.403	ENSPNAG00000021528	upf3b	72	73.118	Pygocentrus_nattereri
ENSRBIG00000037219	UPF3B	100	83.960	ENSRNOG00000039994	Upf3b	82	84.211	Rattus_norvegicus
ENSRBIG00000037219	UPF3B	100	97.481	ENSRROG00000041031	UPF3B	82	97.481	Rhinopithecus_roxellana
ENSRBIG00000037219	UPF3B	100	95.718	ENSSBOG00000019740	UPF3B	82	95.718	Saimiri_boliviensis_boliviensis
ENSRBIG00000037219	UPF3B	97	71.916	ENSSHAG00000008634	UPF3B	80	71.129	Sarcophilus_harrisii
ENSRBIG00000037219	UPF3B	97	50.895	ENSSHAG00000009895	UPF3A	89	49.871	Sarcophilus_harrisii
ENSRBIG00000037219	UPF3B	100	58.524	ENSSFOG00015005614	upf3b	85	55.867	Scleropages_formosus
ENSRBIG00000037219	UPF3B	91	56.044	ENSSMAG00000012913	upf3b	60	75.135	Scophthalmus_maximus
ENSRBIG00000037219	UPF3B	95	50.133	ENSSDUG00000005682	upf3b	81	51.070	Seriola_dumerili
ENSRBIG00000037219	UPF3B	95	54.667	ENSSLDG00000003130	upf3b	81	56.150	Seriola_lalandi_dorsalis
ENSRBIG00000037219	UPF3B	100	82.250	ENSSARG00000004147	UPF3B	92	81.750	Sorex_araneus
ENSRBIG00000037219	UPF3B	99	65.816	ENSSPUG00000013082	UPF3B	81	63.706	Sphenodon_punctatus
ENSRBIG00000037219	UPF3B	95	55.676	ENSSPAG00000009989	upf3b	81	52.011	Stegastes_partitus
ENSRBIG00000037219	UPF3B	100	92.188	ENSSSCG00000012617	UPF3B	82	92.188	Sus_scrofa
ENSRBIG00000037219	UPF3B	99	68.992	ENSTGUG00000003413	UPF3B	91	69.072	Taeniopygia_guttata
ENSRBIG00000037219	UPF3B	91	52.747	ENSTGUG00000009493	UPF3A	88	51.657	Taeniopygia_guttata
ENSRBIG00000037219	UPF3B	100	75.567	ENSTBEG00000003229	UPF3B	82	75.567	Tupaia_belangeri
ENSRBIG00000037219	UPF3B	100	86.889	ENSUAMG00000024565	UPF3B	82	89.119	Ursus_americanus
ENSRBIG00000037219	UPF3B	100	88.571	ENSUMAG00000002150	UPF3B	83	84.115	Ursus_maritimus
ENSRBIG00000037219	UPF3B	100	92.947	ENSVPAG00000009971	UPF3B	97	92.947	Vicugna_pacos
ENSRBIG00000037219	UPF3B	100	89.844	ENSVVUG00000011594	UPF3B	81	88.281	Vulpes_vulpes
ENSRBIG00000037219	UPF3B	96	54.188	ENSXETG00000007440	upf3b	84	53.947	Xenopus_tropicalis
ENSRBIG00000037219	UPF3B	97	52.895	ENSXCOG00000016586	upf3b	60	76.033	Xiphophorus_couchianus
ENSRBIG00000037219	UPF3B	92	56.863	ENSXMAG00000013680	upf3b	79	56.863	Xiphophorus_maculatus